ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags11k12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1513_THEMA (Q9X1K1) UPF0348 protein TM1513 30 4.5
2RNFA_PSEAE (Q9HYC0) Electron transport complex protein rnfA 30 5.8
3ADP2_MYCGA (Q9REM8) Adhesin P1 precursor (Cytadhesin P1) (Attach... 30 5.8
4ADP1_MYCGA (Q49379) Adhesin P1 precursor (Cytadhesin P1) (Attach... 30 5.8
5CU55_ARADI (P80518) Adult-specific rigid cuticular protein 15.5 ... 30 7.6

>Y1513_THEMA (Q9X1K1) UPF0348 protein TM1513|
          Length = 418

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
 Frame = +2

Query: 11  FEVDCEYIPDVSAKYPLFVSGRFRG------ELPETLYAEGYLSDMSKISIELKVQQIKD 172
           FEV+ E++   + K P ++  R  G      E+   +  +  L  ++ +S+  KV +  D
Sbjct: 312 FEVNKEFVEKSNTKGPQYI--RILGFTEKGREILSLMRKKAKLPIVTNMSLYRKVLEKTD 369

Query: 173 IPLDKVLAKQQMDL 214
           +P+DK L  +Q+DL
Sbjct: 370 LPVDKQLFLEQIDL 383



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>RNFA_PSEAE (Q9HYC0) Electron transport complex protein rnfA|
          Length = 194

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -3

Query: 199 LCQHFVKRYILYLLDLQFNRYLTHVRQIALSIKSLRQFTSESS 71
           +C H ++RY+L  LDL++ R +  +  IA+ ++       ++S
Sbjct: 54  MCSHILQRYVLRPLDLEYLRTIGFILVIAVVVQFTEMLVKKTS 96



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>ADP2_MYCGA (Q9REM8) Adhesin P1 precursor (Cytadhesin P1) (Attachment protein)|
           (Adherence protein A)
          Length = 1122

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 253 GANGGKNEHTKWHSFGVHTDSPTS 324
           G NGG    TKWHS  V  D+PT+
Sbjct: 510 GTNGGNFLDTKWHSPAVIEDAPTT 533



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>ADP1_MYCGA (Q49379) Adhesin P1 precursor (Cytadhesin P1) (Attachment protein)|
          Length = 1122

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 253 GANGGKNEHTKWHSFGVHTDSPTS 324
           G NGG    TKWHS  V  D+PT+
Sbjct: 510 GTNGGNFLDTKWHSPAVIEDAPTT 533



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>CU55_ARADI (P80518) Adult-specific rigid cuticular protein 15.5 (ACP 15.5)|
          Length = 156

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 21/63 (33%), Positives = 25/63 (39%)
 Frame = -2

Query: 323 EVGLSVCTPKECHFVCSFLPPFAPVACFQKAKLLLLEGPSVALPTLCQEVYPLFVGPSIQ 144
           E G ++  P     V  + PP APVA            P+VA P L     PL   P I 
Sbjct: 80  EPGTALSAPASAAIVSPYAPPVAPVA------------PAVAAPALA--AAPLLAAPGIA 125

Query: 143 SIS 135
           S S
Sbjct: 126 SYS 128


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,183,418
Number of Sequences: 219361
Number of extensions: 1390813
Number of successful extensions: 4234
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4233
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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