ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags11k03 |
|---|---|
| Clone Library Name | barley_pub |
>SER2_GALME (O96615) Sericin-2 (Silk gum protein 2) (Fragment)| Length = 220 Score = 37.0 bits (84), Expect = 0.042 Identities = 42/183 (22%), Positives = 67/183 (36%), Gaps = 13/183 (7%) Frame = +2 Query: 26 SMSQISHGHSGISNRGGMNVGGNPVFSSSMNAIGGSAQGLSSSMANVGNR--NSAPGLTA 199 S + S G S +N G + N SS N+ G S+ SSS ++ GN +S+ + Sbjct: 20 SSTNNSSGSSSTNNASGSSSSNNTSGSSRNNSSGSSSSNNSSSGSSAGNSSGSSSSNSSG 79 Query: 200 SSVLGNLGPRITNSAXXXXXXXXXXXXXXXXXXXMPXXXXXXXXXXXXXXXALNI----- 364 SS +G+L ++S+ + I Sbjct: 80 SSGIGSLSRNSSSSSSSQAAGSSSSRRVSADGSSSSSSASNSAAAQNSASSSETINADGS 139 Query: 365 ---PSNRLSSMHQAS---PQFMNILGSSYPAQGGTLSQNQVQAGNNSFSSSGMLHDGNSG 526 S+ SS Q S Q +N GS + + + NQ A SSS + DG+ Sbjct: 140 ENESSSSSSSAAQNSATRSQVINADGSQSSSSSSSSASNQASA----TSSSSVSADGSES 195 Query: 527 DNS 535 ++S Sbjct: 196 ESS 198
>PPE10_MYCTU (P42611) Hypothetical PPE-family protein PPE10| Length = 487 Score = 35.4 bits (80), Expect = 0.12 Identities = 23/62 (37%), Positives = 33/62 (53%) Frame = +2 Query: 20 SVSMSQISHGHSGISNRGGMNVGGNPVFSSSMNAIGGSAQGLSSSMANVGNRNSAPGLTA 199 +V + G+ GI N G +N G S ++NA GSA L++S N G +N+A G A Sbjct: 281 NVGLFNSGSGNIGIGNSGSLNSGIGT--SGTINAGLGSAGSLNTSFWNAGMQNAALGSAA 338 Query: 200 SS 205 S Sbjct: 339 GS 340 Score = 29.6 bits (65), Expect = 6.7 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Frame = +2 Query: 38 ISHGHSGISNRGGMNVGGNPVFSSSM---NAIGGSAQGLSSSMANVGNRNSAPGLTASSV 208 + G++G N G N+G N + S + N G+ + + N+G+ N G T S Sbjct: 190 LGFGNTGSGNIGNNNIGNNNIGSGNTGTGNIGSGNTGSGNLGLGNLGDGNIGFGNTGS-- 247 Query: 209 LGNLGPRIT 235 GN+G IT Sbjct: 248 -GNIGFGIT 255
>RGA_DROME (Q94547) Regulator of gene activity (Protein regena)| Length = 585 Score = 35.4 bits (80), Expect = 0.12 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Frame = +2 Query: 47 GHSGISNRGGMNVGGNPVFSSSMNAIGGSAQGLSSSMANVGNRNSAPGLTA-SSVLGNLG 223 G G + GG VGGN ++ +GGS GL S + +G NS P A V G LG Sbjct: 300 GGGGAGSSGGGGVGGN----AASGVVGGSHVGLVGSNSGIGGVNSVPNSNAMMGVGGGLG 355
>P69_MYCGE (P47533) Transport system permease protein p69| Length = 543 Score = 33.5 bits (75), Expect = 0.46 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = +1 Query: 187 WVDSFFSFGELRPTYNKFCGQYSGWQQYWQKHKLSRNVHAWYFIPYQFE 333 ++ +FF L+ +NK + SG++ +W LS N W F Y E Sbjct: 156 YITTFFENSNLKYFFNKKIREGSGFKAFWTTIFLSENERLWLFFLYSLE 204
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 32.3 bits (72), Expect = 1.0 Identities = 20/43 (46%), Positives = 28/43 (65%) Frame = +2 Query: 86 GGNPVFSSSMNAIGGSAQGLSSSMANVGNRNSAPGLTASSVLG 214 GG P +SS+N+ G AQG SS+A+ GN+ S+ G A+S G Sbjct: 319 GGQPAAASSLNSYG--AQG--SSLASYGNQPSSYGAQAASSYG 357
>K2C5_BOVIN (Q5XQN5) Keratin, type II cytoskeletal 5 (Cytokeratin-5) (CK-5)| (Keratin-5) (K5) Length = 601 Score = 31.2 bits (69), Expect = 2.3 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = +2 Query: 26 SMSQISHGHSGISNRGGMNVGGNPVFSSSMNAIG-GSAQGLSSSMANVGNRNSA 184 S S S G+ GG++VGG+ +SS ++G GS G SSS+ V +S+ Sbjct: 542 SSSFYSSSSGGVGLGGGLSVGGSGFSASSGRSLGFGSGGGSSSSVKFVSTTSSS 595
>K2C3_BOVIN (P04261) Keratin, type II cytoskeletal 60 kDa, component III| (Fragment) Length = 182 Score = 31.2 bits (69), Expect = 2.3 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = +2 Query: 26 SMSQISHGHSGISNRGGMNVGGNPVFSSSMNAIG-GSAQGLSSSMANVGNRNSA 184 S S S G+ GG++VGG+ +SS ++G GS G SSS+ V +S+ Sbjct: 123 SSSFYSSSSGGVGLGGGLSVGGSGFSASSGRSLGFGSGGGSSSSVKFVSTTSSS 176
>DYRK2_DROME (Q9V3D5) Dual specificity tyrosine-phosphorylation-regulated kinase| 2 (EC 2.7.12.1) (dDyrk2) (Protein smell impaired at 35A) Length = 722 Score = 30.8 bits (68), Expect = 3.0 Identities = 18/51 (35%), Positives = 29/51 (56%) Frame = +2 Query: 53 SGISNRGGMNVGGNPVFSSSMNAIGGSAQGLSSSMANVGNRNSAPGLTASS 205 +G SN N G+PV SS+ N+ G + SS+ +N + + + G +ASS Sbjct: 65 NGNSNSNNNNNIGSPVSSSTTNSSNGGNERGSSTKSNSSSGSGSSGNSASS 115
>CYSP4_DICDI (P54639) Cysteine proteinase 4 precursor (EC 3.4.22.-)| Length = 442 Score = 30.8 bits (68), Expect = 3.0 Identities = 20/64 (31%), Positives = 29/64 (45%) Frame = +2 Query: 26 SMSQISHGHSGISNRGGMNVGGNPVFSSSMNAIGGSAQGLSSSMANVGNRNSAPGLTASS 205 S S S G S + + GG SSS S+ G +SS ++ G +SA T+ S Sbjct: 286 SGSSSSSGSSSGKSSSSSSTGGKTSSSSSSGKASSSSSGKASSSSSSGKTSSAASSTSGS 345 Query: 206 VLGN 217 G+ Sbjct: 346 QSGS 349
>FPS1_YEAST (P23900) Glycerol uptake/efflux facilitator protein| Length = 669 Score = 30.8 bits (68), Expect = 3.0 Identities = 16/63 (25%), Positives = 33/63 (52%) Frame = +2 Query: 368 SNRLSSMHQASPQFMNILGSSYPAQGGTLSQNQVQAGNNSFSSSGMLHDGNSGDNSPFDI 547 S+R S Q+S + + S+ GGT + N NN+ +++ +DG + D+ +++ Sbjct: 22 SSRKQSNKQSSDEGRSSSQPSHHHSGGTNNNNNNNNNNNNSNNNNNGNDGGNDDDYDYEM 81 Query: 548 NDF 556 D+ Sbjct: 82 QDY 84
>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)| Length = 815 Score = 30.4 bits (67), Expect = 3.9 Identities = 21/59 (35%), Positives = 26/59 (44%) Frame = +2 Query: 47 GHSGISNRGGMNVGGNPVFSSSMNAIGGSAQGLSSSMANVGNRNSAPGLTASSVLGNLG 223 G GIS G N GG+ N GG++ S+ +N N N P L S G LG Sbjct: 378 GPGGISPAHGNNPGGSGNNMLGGNPGGGNSNNNGSNTSNASNNNQNPHL--SPAAGRLG 434
>AIR12_ARATH (Q94BT2) Auxin-induced in root cultures protein 12 precursor| Length = 252 Score = 30.4 bits (67), Expect = 3.9 Identities = 21/67 (31%), Positives = 34/67 (50%) Frame = +2 Query: 38 ISHGHSGISNRGGMNVGGNPVFSSSMNAIGGSAQGLSSSMANVGNRNSAPGLTASSVLGN 217 +++G G+ G N+G + V S + +A GSA S+ A + ++ PG TA+ GN Sbjct: 168 VTNGRPGVHPFGPDNLGSHRVLSFTEDAAPGSAPSPGSAPAPGTSGSTTPG-TAAGGPGN 226 Query: 218 LGPRITN 238 G N Sbjct: 227 AGSLTRN 233
>SCR_DROME (P09077) Homeotic protein Sex combs reduced| Length = 417 Score = 30.0 bits (66), Expect = 5.1 Identities = 19/44 (43%), Positives = 23/44 (52%) Frame = +2 Query: 395 ASPQFMNILGSSYPAQGGTLSQNQVQAGNNSFSSSGMLHDGNSG 526 +S QF+N L S YP Q QN AGN+S SG G+ G Sbjct: 9 SSYQFVNSLASCYPQQMNP-QQNHPGAGNSSAGGSGGGAGGSGG 51
>PNT1_DROME (P51022) ETS-like protein pointed, isoform P1 (D-ETS-2)| Length = 623 Score = 30.0 bits (66), Expect = 5.1 Identities = 31/170 (18%), Positives = 58/170 (34%) Frame = +2 Query: 26 SMSQISHGHSGISNRGGMNVGGNPVFSSSMNAIGGSAQGLSSSMANVGNRNSAPGLTASS 205 S Q HG+ + + G S++ + G S+ G SSS ++ G N + TA++ Sbjct: 129 SQQQQQHGYGSSAQLPHHRLSGGSTGSTTTTSSGSSSSGSSSSASSQGFANGS--ATANN 186 Query: 206 VLGNLGPRITNSAXXXXXXXXXXXXXXXXXXXMPXXXXXXXXXXXXXXXALNIPSNRLSS 385 ++G L S I ++ Sbjct: 187 LVGALSSSTAASLGLGYFNDMAPFVGDANAYYTDSDVNFFSSGYNTSNTHDRINNSTPPQ 246 Query: 386 MHQASPQFMNILGSSYPAQGGTLSQNQVQAGNNSFSSSGMLHDGNSGDNS 535 Q+ +N GS+ ++ VQ NN +++ + NS +N+ Sbjct: 247 QQQSQQPTVNGSGSASSNNNNSMLPPAVQQSNNENNNTSSSNTNNSSNNN 296
>KIC1_YEAST (P38692) Serine/threonine-protein kinase KIC1 (EC 2.7.11.1) (Kinase| that interacts with CDC31) (N-rich kinase 1) Length = 1080 Score = 30.0 bits (66), Expect = 5.1 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = +2 Query: 368 SNRLSSMHQASPQFMNILGSSYPAQGGTLSQNQVQAGNNSFSSSGMLHDGNSGDNS 535 SNR +S AS +NILGSS + N V + NNS ++ + N+G+ + Sbjct: 905 SNRKNS--SASEHPLNILGSSVSGNVSGIGNNNVGSNNNSGPNNSVPLSANTGNTT 958
>K2C5_HUMAN (P13647) Keratin, type II cytoskeletal 5 (Cytokeratin-5) (CK-5)| (Keratin-5) (K5) (58 kDa cytokeratin) Length = 590 Score = 30.0 bits (66), Expect = 5.1 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Frame = +2 Query: 26 SMSQISHGHSGISNRGGMNVGGNPVFSSSMNAIG---GSAQGLSSSMANVGNRNSA 184 S S S G+ GG++VGG+ +SS +G GS G SSS+ V +S+ Sbjct: 529 SGSYYSSSSGGVGLGGGLSVGGSGFSASSGRGLGVGFGSGGGSSSSVKFVSTTSSS 584
>DACH1_HUMAN (Q9UI36) Dachshund homolog 1 (Dach1)| Length = 758 Score = 29.6 bits (65), Expect = 6.7 Identities = 17/59 (28%), Positives = 33/59 (55%) Frame = +2 Query: 26 SMSQISHGHSGISNRGGMNVGGNPVFSSSMNAIGGSAQGLSSSMANVGNRNSAPGLTAS 202 +++ S+G G GG++ GG S+ +NA GS+ SSS ++ + +S+ ++S Sbjct: 107 NLAAASNGSGG--GGGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSS 163
>PKL_ARATH (Q9S775) CHD3-type chromatin remodeling factor PICKLE (EC 3.6.1.-)| (Protein GYMNOS) Length = 1384 Score = 29.6 bits (65), Expect = 6.7 Identities = 18/49 (36%), Positives = 22/49 (44%) Frame = +2 Query: 356 LNIPSNRLSSMHQASPQFMNILGSSYPAQGGTLSQNQVQAGNNSFSSSG 502 LN P LS+ QA Q N G S P + V GNN+ S+ G Sbjct: 1108 LNFPHISLSAAEQAGLQGQNGSGGSNPGAQTNQNPGSVITGNNNASADG 1156
>HEM3_YARLI (Q6C097) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 338 Score = 29.3 bits (64), Expect = 8.7 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +2 Query: 128 GSAQGLSSSMANVGNRNSAPGLTASSVLGNLGPRIT 235 GS G SS + + S PGL SV GN+G R++ Sbjct: 143 GSVVGTSSIRRSAQLKKSYPGLVYESVRGNVGTRLS 178
>ACT1_TRYBB (P12432) Actin A| Length = 376 Score = 29.3 bits (64), Expect = 8.7 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +2 Query: 491 SSSGMLHDGNSGDNSPFDINDFPQLTGRPNS 583 + SGM+ G SGD++P + FP + GRP + Sbjct: 13 NGSGMVKSGFSGDDAPRHV--FPSIVGRPKN 41
>PPE21_MYCTU (Q10778) Hypothetical PPE-family protein PPE21| Length = 678 Score = 29.3 bits (64), Expect = 8.7 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +2 Query: 38 ISHGHSGISNRGGMNVGGNPVFSSSMNAIGGSAQGLSSSMANVGNRNSAPGLTASSVL-- 211 + G++G +N GG N G ++N GG+ + N GN N G T + Sbjct: 287 LGSGNTGDTNFGGGNTG-------NLNVGGGNTGNSNFGFGNTGNVNFGNGNTGDTNFGS 339 Query: 212 GNLG 223 GNLG Sbjct: 340 GNLG 343
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 29.3 bits (64), Expect = 8.7 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +2 Query: 86 GGNPVFSSSMNAIGGSAQGLSSSMANVGNRNSAPGLTASSVLG 214 GG +SS+N+ G AQG SS+A+ GN+ S+ G A+S G Sbjct: 319 GGQAAAASSLNSYG--AQG--SSLASYGNQPSSYGAQAASSYG 357
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 29.3 bits (64), Expect = 8.7 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +2 Query: 86 GGNPVFSSSMNAIGGSAQGLSSSMANVGNRNSAPGLTASSVLG 214 GG +SS+N+ G AQG SS+A+ GN+ S+ G A+S G Sbjct: 319 GGQAAAASSLNSYG--AQG--SSLASYGNQPSSYGAQAASSYG 357
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 29.3 bits (64), Expect = 8.7 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +2 Query: 86 GGNPVFSSSMNAIGGSAQGLSSSMANVGNRNSAPGLTASSVLG 214 GG +SS+N+ G AQG SS+A+ GN+ S+ G A+S G Sbjct: 319 GGQAAAASSLNSYG--AQG--SSLASYGNQPSSYGAQAASSYG 357 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,115,061 Number of Sequences: 219361 Number of extensions: 1657297 Number of successful extensions: 4966 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4614 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4914 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
