ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags11k01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK071215.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084I15, full insert sequence Length = 1371 Score = 658 bits (332), Expect = 0.0 Identities = 504/560 (90%), Gaps = 1/560 (0%) Strand = Plus / Plus Query: 1 gcgccgctgttcgagtcgctggccgccacgggcgtgctggagccggacgccgcactgctc 60 ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||| Sbjct: 181 gcgccgctgttcgagtcgctggccgccgcgggcgtcctggagccggacgacgcgctgctc 240 Query: 61 gccgagatgcgcgcccggatcgacgaggagatccgcaagctcgatgagaaaattgctgat 120 |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct: 241 gccgagatgcgcgcgcggatcgacgaggaggtccgcaagctcgacgagaaaattgctgat 300 Query: 121 gctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaagtccttgtac 180 ||||||||||| ||||| ||||| ||||||||||| |||||||| || || ||||||||| Sbjct: 301 gctgaagagaatttgggtgagagcgaagtgcgtgaggcccatctggcgaaatccttgtac 360 Query: 181 tttgtaaaggttggcgagaaggaaaaagcactggaacaacttaaagttactgaaggaaaa 240 || | | |||||| |||||||||||||||||||| || ||||||||||||||||| ||| Sbjct: 361 ttcatgagggttggagagaaggaaaaagcactggagcagcttaaagttactgaagggaaa 420 Query: 241 actgtagccattggccagaagatggatcttgtgttctacactttgcaaattggccttttc 300 |||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 421 actgtagctgttggccagaaaatggatcttgtgttctacactttgcaaataggccttttc 480 Query: 301 tacatggacttcgatctcatctcaaaatcaattgataaggcaaagaagttgtttgaggag 360 |||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||| Sbjct: 481 cacatggactttgatctcatctcaaaatccattgacaaggcaaagaacctgtttgaggaa 540 Query: 361 ggaggtgactgggagagaaagaacagattgaaagtgtacgaaggcctatactgcatggca 420 ||||| |||||||||||||||||| |||||||||| || ||||||||||||| ||||||| Sbjct: 541 ggaggcgactgggagagaaagaaccgattgaaagtatatgaaggcctatacttcatggca 600 Query: 421 actagaaacttcaagaaagctaccagcctgtttttggactccatctcaactttcacaacc 480 || |||||||||||||||||| ||||| | ||||| || |||||||||||||||||||| Sbjct: 601 acgagaaacttcaagaaagctgccagcttatttttagattccatctcaactttcacaact 660 Query: 481 tatgagctgtttccatacgacactttcatcttctatacagtcctcacgagtataatctca 540 || ||| |||||||||| || ||||| |||||||||||||| |||| || |||||| || Sbjct: 661 tacgagttgtttccatatgatacttttgtcttctatacagtcatcacaagcataatcaca 720 Query: 541 ttgggatcgtgtatctctaa 560 || ||||||||||||||||| Sbjct: 721 tt-ggatcgtgtatctctaa 739
>gb|BT016822.1| Zea mays clone Contig655 mRNA sequence Length = 1636 Score = 511 bits (258), Expect = e-142 Identities = 481/554 (86%), Gaps = 1/554 (0%) Strand = Plus / Plus Query: 5 cgctgttcgagtcgctggccgccacgggcgtgctggagccggacgccgcactgctcgccg 64 ||||||| |||||||||| |||| |||| ||||||||| ||||||||| ||||| |||| Sbjct: 278 cgctgtttgagtcgctggtcgccgcgggtgtgctggagggggacgccgcgctgctggccg 337 Query: 65 agatgcgcgcccggatcgacgaggagatccgcaagctcgatgagaaaattgctgatgctg 124 ||||||| | |||| |||||||||||||||||||| |||||||||||||||||||| | Sbjct: 338 agatgcgtgggaggattgacgaggagatccgcaagctagatgagaaaattgctgatgcgg 397 Query: 125 aagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaagtccttgtactttg 184 | ||||||||||| ||||| ||||| |||||||| ||||||||||| || ||||||||| Sbjct: 398 aggagaacttgggtgagagcgaagtccgtgaagcacatcttgccaaatctttgtacttta 457 Query: 185 taaaggttggcgagaaggaaaaagcactggaacaacttaaagttactgaaggaaaaactg 244 ||| ||| || ||||||||||| || |||||||| |||||||| |||||||||||||||| Sbjct: 458 taagggtcggtgagaaggaaaaggccctggaacagcttaaagtcactgaaggaaaaactg 517 Query: 245 tagccattggccagaagatggatcttgtgttctacactttgcaaattggccttttctaca 304 |||| ||||||| |||||||||||||||||| |||||||||| ||||| ||||||||| Sbjct: 518 tagctgttggccaaaagatggatcttgtgttccacactttgcagattggttttttctaca 577 Query: 305 tggacttcgatctcatctcaaaatcaattgataaggcaaagaagttgtttgaggagggag 364 |||| || ||||| || |||||||| || |||||||||||||| ||||||||||| |||| Sbjct: 578 tggattttgatctgatatcaaaatccatcgataaggcaaagaacttgtttgaggaaggag 637 Query: 365 gtgactgggagagaaagaacagattgaaagtgtacgaaggcctatactgcatggcaacta 424 | || |||||||| |||||||| |||||||| || |||||| | |||||||||||||| | Sbjct: 638 gcgattgggagaggaagaacaggttgaaagtatatgaaggcttgtactgcatggcaacca 697 Query: 425 gaaacttcaagaaagctaccagcctgtttttggactccatctcaactttcacaacctatg 484 ||||||||||||||||| ||||| | ||||| ||||| || || ||||||||||| |||| Sbjct: 698 gaaacttcaagaaagctgccagcttatttttagactcgatttcgactttcacaacttatg 757 Query: 485 agctgtttccatacgacactttcatcttctatacagtcctcacgagtataatctcattgg 544 || | || ||||| || || ||||||||||||||||||||||| ||| | ||| |||| | Sbjct: 758 agatattcccatatgatacgttcatcttctatacagtcctcacaagtgtcatcacatt-g 816 Query: 545 gatcgtgtatctct 558 |||||||||||||| Sbjct: 817 gatcgtgtatctct 830
>gb|AY104803.1| Zea mays PCO064157 mRNA sequence Length = 1631 Score = 511 bits (258), Expect = e-142 Identities = 481/554 (86%), Gaps = 1/554 (0%) Strand = Plus / Plus Query: 5 cgctgttcgagtcgctggccgccacgggcgtgctggagccggacgccgcactgctcgccg 64 ||||||| |||||||||| |||| |||| ||||||||| ||||||||| ||||| |||| Sbjct: 293 cgctgtttgagtcgctggtcgccgcgggtgtgctggagggggacgccgcgctgctggccg 352 Query: 65 agatgcgcgcccggatcgacgaggagatccgcaagctcgatgagaaaattgctgatgctg 124 ||||||| | |||| |||||||||||||||||||| |||||||||||||||||||| | Sbjct: 353 agatgcgtgggaggattgacgaggagatccgcaagctagatgagaaaattgctgatgcgg 412 Query: 125 aagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaagtccttgtactttg 184 | ||||||||||| ||||| ||||| |||||||| ||||||||||| || ||||||||| Sbjct: 413 aggagaacttgggtgagagcgaagtccgtgaagcacatcttgccaaatctttgtacttta 472 Query: 185 taaaggttggcgagaaggaaaaagcactggaacaacttaaagttactgaaggaaaaactg 244 ||| ||| || ||||||||||| || |||||||| |||||||| |||||||||||||||| Sbjct: 473 taagggtcggtgagaaggaaaaggccctggaacagcttaaagtcactgaaggaaaaactg 532 Query: 245 tagccattggccagaagatggatcttgtgttctacactttgcaaattggccttttctaca 304 |||| ||||||| |||||||||||||||||| |||||||||| ||||| ||||||||| Sbjct: 533 tagctgttggccaaaagatggatcttgtgttccacactttgcagattggttttttctaca 592 Query: 305 tggacttcgatctcatctcaaaatcaattgataaggcaaagaagttgtttgaggagggag 364 |||| || ||||| || |||||||| || |||||||||||||| ||||||||||| |||| Sbjct: 593 tggattttgatctgatatcaaaatccatcgataaggcaaagaacttgtttgaggaaggag 652 Query: 365 gtgactgggagagaaagaacagattgaaagtgtacgaaggcctatactgcatggcaacta 424 | || |||||||| |||||||| |||||||| || |||||| | |||||||||||||| | Sbjct: 653 gcgattgggagaggaagaacaggttgaaagtatatgaaggcttgtactgcatggcaacca 712 Query: 425 gaaacttcaagaaagctaccagcctgtttttggactccatctcaactttcacaacctatg 484 ||||||||||||||||| ||||| | ||||| ||||| || || ||||||||||| |||| Sbjct: 713 gaaacttcaagaaagctgccagcttatttttagactcgatttcgactttcacaacttatg 772 Query: 485 agctgtttccatacgacactttcatcttctatacagtcctcacgagtataatctcattgg 544 || | || ||||| || || ||||||||||||||||||||||| ||| | ||| |||| | Sbjct: 773 agatattcccatatgatacgttcatcttctatacagtcctcacaagtgtcatcacatt-g 831 Query: 545 gatcgtgtatctct 558 |||||||||||||| Sbjct: 832 gatcgtgtatctct 845
>ref|XM_472939.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1170 Score = 432 bits (218), Expect = e-118 Identities = 453/530 (85%), Gaps = 1/530 (0%) Strand = Plus / Plus Query: 31 ggcgtgctggagccggacgccgcactgctcgccgagatgcgcgcccggatcgacgaggag 90 |||||||||||| ||||||| || |||||||| |||||||||| | ||||||| |||||| Sbjct: 181 ggcgtgctggagacggacgctgcgctgctcgcggagatgcgcggcaggatcgaggaggag 240 Query: 91 atccgcaagctcgatgagaaaattgctgatgctgaagagaacttgggcgagagtgaagtg 150 ||||| ||||| || ||||| || ||||||||||||||||| ||||| |||||||||||| Sbjct: 241 atccggaagcttgacgagaagatcgctgatgctgaagagaatttgggtgagagtgaagtg 300 Query: 151 cgtgaagcccatcttgccaagtccttgtactttgtaaaggttggcgagaaggaaaaagca 210 |||||||||||||| ||||| || ||||| || ||| |||||| |||||||| || ||| Sbjct: 301 cgtgaagcccatctagccaaatcgttgtatttcataagggttggagagaaggagaaggca 360 Query: 211 ctggaacaacttaaagttactgaaggaaaaactgtagccattggccagaagatggatctt 270 || ||||| ||||||||||||||||||||||||||||| |||| || |||||||| ||| Sbjct: 361 ctagaacagcttaaagttactgaaggaaaaactgtagctgttgggcaaaagatggacctt 420 Query: 271 gtgttctacactttgcaaattggccttttctacatggacttcgatctcatctcaaaatca 330 || ||| ||||||| || ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 421 gttttccacactttacagattgggtttttctatatggattttgatctcatctctaagtct 480 Query: 331 attgataaggcaaagaagttgtttgaggagggaggtgactgggagagaaagaacagattg 390 ||||| || || || || |||||||||||||| ||||| |||||||| |||||||||||| Sbjct: 481 attgacaaagccaaaaaattgtttgaggagggtggtgattgggagaggaagaacagattg 540 Query: 391 aaagtgtacgaaggcctatactgcatggcaactagaaacttcaagaaagctaccagcctg 450 ||||||||||| ||| ||||||||||||| ||||||||||||||||||||| | ||| | Sbjct: 541 aaagtgtacgagggcttatactgcatggccactagaaacttcaagaaagctgcaagctta 600 Query: 451 tttttggactccatctcaactttcacaacctatgagctgtttccatacgacactttcatc 510 |||||||| || || ||||| ||||||||||||||| |||| || || || || ||||| Sbjct: 601 tttttggattcaatttcaacattcacaacctatgagttgttcccctatgatacattcata 660 Query: 511 ttctatacagtcctcacgagtataatctcattgggatcgtgtatctctaa 560 ||||| ||||| || || ||| | |||||||| |||||||||||| |||| Sbjct: 661 ttctacacagttcttacaagtgttatctcatt-ggatcgtgtatccctaa 709
>dbj|AK104327.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-F11, full insert sequence Length = 1510 Score = 432 bits (218), Expect = e-118 Identities = 453/530 (85%), Gaps = 1/530 (0%) Strand = Plus / Plus Query: 31 ggcgtgctggagccggacgccgcactgctcgccgagatgcgcgcccggatcgacgaggag 90 |||||||||||| ||||||| || |||||||| |||||||||| | ||||||| |||||| Sbjct: 302 ggcgtgctggagacggacgctgcgctgctcgcggagatgcgcggcaggatcgaggaggag 361 Query: 91 atccgcaagctcgatgagaaaattgctgatgctgaagagaacttgggcgagagtgaagtg 150 ||||| ||||| || ||||| || ||||||||||||||||| ||||| |||||||||||| Sbjct: 362 atccggaagcttgacgagaagatcgctgatgctgaagagaatttgggtgagagtgaagtg 421 Query: 151 cgtgaagcccatcttgccaagtccttgtactttgtaaaggttggcgagaaggaaaaagca 210 |||||||||||||| ||||| || ||||| || ||| |||||| |||||||| || ||| Sbjct: 422 cgtgaagcccatctagccaaatcgttgtatttcataagggttggagagaaggagaaggca 481 Query: 211 ctggaacaacttaaagttactgaaggaaaaactgtagccattggccagaagatggatctt 270 || ||||| ||||||||||||||||||||||||||||| |||| || |||||||| ||| Sbjct: 482 ctagaacagcttaaagttactgaaggaaaaactgtagctgttgggcaaaagatggacctt 541 Query: 271 gtgttctacactttgcaaattggccttttctacatggacttcgatctcatctcaaaatca 330 || ||| ||||||| || ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 542 gttttccacactttacagattgggtttttctatatggattttgatctcatctctaagtct 601 Query: 331 attgataaggcaaagaagttgtttgaggagggaggtgactgggagagaaagaacagattg 390 ||||| || || || || |||||||||||||| ||||| |||||||| |||||||||||| Sbjct: 602 attgacaaagccaaaaaattgtttgaggagggtggtgattgggagaggaagaacagattg 661 Query: 391 aaagtgtacgaaggcctatactgcatggcaactagaaacttcaagaaagctaccagcctg 450 ||||||||||| ||| ||||||||||||| ||||||||||||||||||||| | ||| | Sbjct: 662 aaagtgtacgagggcttatactgcatggccactagaaacttcaagaaagctgcaagctta 721 Query: 451 tttttggactccatctcaactttcacaacctatgagctgtttccatacgacactttcatc 510 |||||||| || || ||||| ||||||||||||||| |||| || || || || ||||| Sbjct: 722 tttttggattcaatttcaacattcacaacctatgagttgttcccctatgatacattcata 781 Query: 511 ttctatacagtcctcacgagtataatctcattgggatcgtgtatctctaa 560 ||||| ||||| || || ||| | |||||||| |||||||||||| |||| Sbjct: 782 ttctacacagttcttacaagtgttatctcatt-ggatcgtgtatccctaa 830
>dbj|AK068887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002M12, full insert sequence Length = 1515 Score = 432 bits (218), Expect = e-118 Identities = 453/530 (85%), Gaps = 1/530 (0%) Strand = Plus / Plus Query: 31 ggcgtgctggagccggacgccgcactgctcgccgagatgcgcgcccggatcgacgaggag 90 |||||||||||| ||||||| || |||||||| |||||||||| | ||||||| |||||| Sbjct: 307 ggcgtgctggagacggacgctgcgctgctcgcggagatgcgcggcaggatcgaggaggag 366 Query: 91 atccgcaagctcgatgagaaaattgctgatgctgaagagaacttgggcgagagtgaagtg 150 ||||| ||||| || ||||| || ||||||||||||||||| ||||| |||||||||||| Sbjct: 367 atccggaagcttgacgagaagatcgctgatgctgaagagaatttgggtgagagtgaagtg 426 Query: 151 cgtgaagcccatcttgccaagtccttgtactttgtaaaggttggcgagaaggaaaaagca 210 |||||||||||||| ||||| || ||||| || ||| |||||| |||||||| || ||| Sbjct: 427 cgtgaagcccatctagccaaatcgttgtatttcataagggttggagagaaggagaaggca 486 Query: 211 ctggaacaacttaaagttactgaaggaaaaactgtagccattggccagaagatggatctt 270 || ||||| ||||||||||||||||||||||||||||| |||| || |||||||| ||| Sbjct: 487 ctagaacagcttaaagttactgaaggaaaaactgtagctgttgggcaaaagatggacctt 546 Query: 271 gtgttctacactttgcaaattggccttttctacatggacttcgatctcatctcaaaatca 330 || ||| ||||||| || ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 547 gttttccacactttacagattgggtttttctatatggattttgatctcatctctaagtct 606 Query: 331 attgataaggcaaagaagttgtttgaggagggaggtgactgggagagaaagaacagattg 390 ||||| || || || || |||||||||||||| ||||| |||||||| |||||||||||| Sbjct: 607 attgacaaagccaaaaaattgtttgaggagggtggtgattgggagaggaagaacagattg 666 Query: 391 aaagtgtacgaaggcctatactgcatggcaactagaaacttcaagaaagctaccagcctg 450 ||||||||||| ||| ||||||||||||| ||||||||||||||||||||| | ||| | Sbjct: 667 aaagtgtacgagggcttatactgcatggccactagaaacttcaagaaagctgcaagctta 726 Query: 451 tttttggactccatctcaactttcacaacctatgagctgtttccatacgacactttcatc 510 |||||||| || || ||||| ||||||||||||||| |||| || || || || ||||| Sbjct: 727 tttttggattcaatttcaacattcacaacctatgagttgttcccctatgatacattcata 786 Query: 511 ttctatacagtcctcacgagtataatctcattgggatcgtgtatctctaa 560 ||||| ||||| || || ||| | |||||||| |||||||||||| |||| Sbjct: 787 ttctacacagttcttacaagtgttatctcatt-ggatcgtgtatccctaa 835
>dbj|AB037149.1| Oryza sativa (japonica cultivar-group) OsRPN7 mRNA for 26S proteasome regulatory particle non-ATPase subunit7, complete cds Length = 1547 Score = 432 bits (218), Expect = e-118 Identities = 453/530 (85%), Gaps = 1/530 (0%) Strand = Plus / Plus Query: 31 ggcgtgctggagccggacgccgcactgctcgccgagatgcgcgcccggatcgacgaggag 90 |||||||||||| ||||||| || |||||||| |||||||||| | ||||||| |||||| Sbjct: 265 ggcgtgctggagacggacgctgcgctgctcgcggagatgcgcggcaggatcgaggaggag 324 Query: 91 atccgcaagctcgatgagaaaattgctgatgctgaagagaacttgggcgagagtgaagtg 150 ||||| ||||| || ||||| || ||||||||||||||||| ||||| |||||||||||| Sbjct: 325 atccggaagcttgacgagaagatcgctgatgctgaagagaatttgggtgagagtgaagtg 384 Query: 151 cgtgaagcccatcttgccaagtccttgtactttgtaaaggttggcgagaaggaaaaagca 210 |||||||||||||| ||||| || ||||| || ||| |||||| |||||||| || ||| Sbjct: 385 cgtgaagcccatctagccaaatcgttgtatttcataagggttggagagaaggagaaggca 444 Query: 211 ctggaacaacttaaagttactgaaggaaaaactgtagccattggccagaagatggatctt 270 || ||||| ||||||||||||||||||||||||||||| |||| || |||||||| ||| Sbjct: 445 ctagaacagcttaaagttactgaaggaaaaactgtagctgttgggcaaaagatggacctt 504 Query: 271 gtgttctacactttgcaaattggccttttctacatggacttcgatctcatctcaaaatca 330 || ||| ||||||| || ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 505 gttttccacactttacagattgggtttttctatatggattttgatctcatctctaagtct 564 Query: 331 attgataaggcaaagaagttgtttgaggagggaggtgactgggagagaaagaacagattg 390 ||||| || || || || |||||||||||||| ||||| |||||||| |||||||||||| Sbjct: 565 attgacaaagccaaaaaattgtttgaggagggtggtgattgggagaggaagaacagattg 624 Query: 391 aaagtgtacgaaggcctatactgcatggcaactagaaacttcaagaaagctaccagcctg 450 ||||||||||| ||| ||||||||||||| ||||||||||||||||||||| | ||| | Sbjct: 625 aaagtgtacgagggcttatactgcatggccactagaaacttcaagaaagctgcaagctta 684 Query: 451 tttttggactccatctcaactttcacaacctatgagctgtttccatacgacactttcatc 510 |||||||| || || ||||| ||||||||||||||| |||| || || || || ||||| Sbjct: 685 tttttggattcaatttcaacattcacaacctatgagttgttcccctatgatacattcata 744 Query: 511 ttctatacagtcctcacgagtataatctcattgggatcgtgtatctctaa 560 ||||| ||||| || || ||| | |||||||| |||||||||||| |||| Sbjct: 745 ttctacacagttcttacaagtgttatctcatt-ggatcgtgtatccctaa 793
>gb|AY107400.1| Zea mays PCO125916 mRNA sequence Length = 1443 Score = 406 bits (205), Expect = e-110 Identities = 427/501 (85%) Strand = Plus / Plus Query: 31 ggcgtgctggagccggacgccgcactgctcgccgagatgcgcgcccggatcgacgaggag 90 ||||| |||||| ||||||| || ||||| ||||||||||||||| |||||||||||||| Sbjct: 225 ggcgtactggagacggacgcggcgctgctggccgagatgcgcgccaggatcgacgaggag 284 Query: 91 atccgcaagctcgatgagaaaattgctgatgctgaagagaacttgggcgagagtgaagtg 150 ||||| |||||||| ||||| ||||||||||| || ||||||||||| |||||||||||| Sbjct: 285 atccggaagctcgacgagaagattgctgatgcagaggagaacttgggtgagagtgaagtg 344 Query: 151 cgtgaagcccatcttgccaagtccttgtactttgtaaaggttggcgagaaggaaaaagca 210 ||||| |||||||| ||||| ||||| || || ||| |||||| |||||||| |||||| Sbjct: 345 cgtgaggcccatctcgccaaatccttatatttcataagggttggggagaaggagaaagca 404 Query: 211 ctggaacaacttaaagttactgaaggaaaaactgtagccattggccagaagatggatctt 270 ||||| || ||||||||||||||||||||||||||||| |||| || |||||||| ||| Sbjct: 405 ctggagcagcttaaagttactgaaggaaaaactgtagctgttgggcaaaagatggacctt 464 Query: 271 gtgttctacactttgcaaattggccttttctacatggacttcgatctcatctcaaaatca 330 || |||||||| | |||||||| | ||||| |||||||| ||||||||||| || || Sbjct: 465 gttttctacacactacaaattggattgttctatatggactttgatctcatctcgaagtcc 524 Query: 331 attgataaggcaaagaagttgtttgaggagggaggtgactgggagagaaagaacagattg 390 ||||| || || || || ||||||||||| || ||||| ||||| || |||||||||||| Sbjct: 525 attgacaaagcgaaaaacttgtttgaggaaggtggtgattgggaaaggaagaacagattg 584 Query: 391 aaagtgtacgaaggcctatactgcatggcaactagaaacttcaagaaagctaccagcctg 450 ||||| || ||||| | ||||||||||||||||||||||||||||||||| | || | Sbjct: 585 aaagtatatgaagggttgtactgcatggcaactagaaacttcaagaaagctgctagttta 644 Query: 451 tttttggactccatctcaactttcacaacctatgagctgtttccatacgacactttcatc 510 || ||||| || || ||||||||||| || |||||||| || |||| || || |||||| Sbjct: 645 ttcttggattcaatttcaactttcaccacatatgagctattcacatatgatacattcatc 704 Query: 511 ttctatacagtcctcacgagt 531 ||||| ||||||||||||||| Sbjct: 705 ttctacacagtcctcacgagt 725
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 220 bits (111), Expect = 4e-54 Identities = 187/211 (88%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 350 tgtttgaggagggaggtgactgggagagaaagaacagattgaaagtgtacgaaggcctat 409 |||||||||| ||||| |||||||||||||||||| |||||||||| || |||||||||| Sbjct: 23484031 tgtttgaggaaggaggcgactgggagagaaagaaccgattgaaagtatatgaaggcctat 23484090 Query: 410 actgcatggcaactagaaacttcaagaaagctaccagcctgtttttggactccatctcaa 469 ||| ||||||||| |||||||||||||||||| ||||| | ||||| || |||||||||| Sbjct: 23484091 acttcatggcaacgagaaacttcaagaaagctgccagcttatttttagattccatctcaa 23484150 Query: 470 ctttcacaacctatgagctgtttccatacgacactttcatcttctatacagtcctcacga 529 |||||||||| || ||| |||||||||| || ||||| |||||||||||||| |||| | Sbjct: 23484151 ctttcacaacttacgagttgtttccatatgatacttttgtcttctatacagtcatcacaa 23484210 Query: 530 gtataatctcattgggatcgtgtatctctaa 560 | |||||| |||| ||||||||||||||||| Sbjct: 23484211 gcataatcacatt-ggatcgtgtatctctaa 23484240 Score = 210 bits (106), Expect = 4e-51 Identities = 139/150 (92%) Strand = Plus / Plus Query: 200 aggaaaaagcactggaacaacttaaagttactgaaggaaaaactgtagccattggccaga 259 |||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||| Sbjct: 23483788 aggaaaaagcactggagcagcttaaagttactgaagggaaaactgtagctgttggccaga 23483847 Query: 260 agatggatcttgtgttctacactttgcaaattggccttttctacatggacttcgatctca 319 | ||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| Sbjct: 23483848 aaatggatcttgtgttctacactttgcaaataggccttttccacatggactttgatctca 23483907 Query: 320 tctcaaaatcaattgataaggcaaagaagt 349 |||||||||| ||||| ||||||||||||| Sbjct: 23483908 tctcaaaatccattgacaaggcaaagaagt 23483937 Score = 163 bits (82), Expect = 8e-37 Identities = 103/110 (93%) Strand = Plus / Plus Query: 1 gcgccgctgttcgagtcgctggccgccacgggcgtgctggagccggacgccgcactgctc 60 ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||| Sbjct: 23481077 gcgccgctgttcgagtcgctggccgccgcgggcgtcctggagccggacgacgcgctgctc 23481136 Query: 61 gccgagatgcgcgcccggatcgacgaggagatccgcaagctcgatgagaa 110 |||||||||||||| ||||||||||||||| ||||||||||||| ||||| Sbjct: 23481137 gccgagatgcgcgcgcggatcgacgaggaggtccgcaagctcgacgagaa 23481186 Score = 127 bits (64), Expect = 4e-26 Identities = 103/114 (90%), Gaps = 4/114 (3%) Strand = Plus / Plus Query: 1 gcgccgctgttcgagtcgctggccgccacgggcgtgctgg---agccggacgccgca-ct 56 |||||||||||||||||||||||| || ||||||||||| ||||||||| |||| || Sbjct: 23411033 gcgccgctgttcgagtcgctggccaccgcgggcgtgctgctcaagccggacgacgcagct 23411092 Query: 57 gctcgccgagatgcgcgcccggatcgacgaggagatccgcaagctcgatgagaa 110 |||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| Sbjct: 23411093 gctcgccgagatgcgcgcgcggatcgacgaggaggtccgcaagctcgacgagaa 23411146 Score = 87.7 bits (44), Expect = 4e-14 Identities = 65/72 (90%) Strand = Plus / Plus Query: 111 aattgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaa 170 ||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| || || Sbjct: 23483615 aattgctgatgctgaagagaatttgggtgagagcgaagtgcgtgaggcccatctggcgaa 23483674 Query: 171 gtccttgtactt 182 ||||||||||| Sbjct: 23483675 atccttgtactt 23483686 Score = 79.8 bits (40), Expect = 9e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 111 aattgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaa 170 ||||||||| ||||||||||| ||||| ||| |||||||||||| |||||| | ||||| Sbjct: 23452755 aattgctgacgctgaagagaatttgggtgaggttgaagtgcgtgaggcccatatagccaa 23452814 Query: 171 gtccttgtactttgtaaaggttggcgagaagg 202 ||||||||||| ||| |||||| ||||||| Sbjct: 23452815 atccttgtacttcataagggttggggagaagg 23452846 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 112 attgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaag 171 |||||||| ||||||||||| ||||| | || |||||||||||| |||||||| || | Sbjct: 23472163 attgctgacgctgaagagaatttgggtgggattgaagtgcgtgaggcccatctagctgaa 23472222 Query: 172 tccttgtactt 182 ||||||||||| Sbjct: 23472223 tccttgtactt 23472233 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 69 gcgcgcccggatcgacgaggagatccgcaagctcga 104 |||||| ||||||||||||||| ||||||||||||| Sbjct: 23471376 gcgcgcgcggatcgacgaggaggtccgcaagctcga 23471411 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Minus Query: 56 tgctcgccgagatgcgcgcccggatcgacgag 87 |||||||||| ||||||||| ||||||||||| Sbjct: 6037642 tgctcgccgacatgcgcgcctggatcgacgag 6037611
>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1791_B03 Length = 166214 Score = 220 bits (111), Expect = 4e-54 Identities = 187/211 (88%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 350 tgtttgaggagggaggtgactgggagagaaagaacagattgaaagtgtacgaaggcctat 409 |||||||||| ||||| |||||||||||||||||| |||||||||| || |||||||||| Sbjct: 49714 tgtttgaggaaggaggcgactgggagagaaagaaccgattgaaagtatatgaaggcctat 49773 Query: 410 actgcatggcaactagaaacttcaagaaagctaccagcctgtttttggactccatctcaa 469 ||| ||||||||| |||||||||||||||||| ||||| | ||||| || |||||||||| Sbjct: 49774 acttcatggcaacgagaaacttcaagaaagctgccagcttatttttagattccatctcaa 49833 Query: 470 ctttcacaacctatgagctgtttccatacgacactttcatcttctatacagtcctcacga 529 |||||||||| || ||| |||||||||| || ||||| |||||||||||||| |||| | Sbjct: 49834 ctttcacaacttacgagttgtttccatatgatacttttgtcttctatacagtcatcacaa 49893 Query: 530 gtataatctcattgggatcgtgtatctctaa 560 | |||||| |||| ||||||||||||||||| Sbjct: 49894 gcataatcacatt-ggatcgtgtatctctaa 49923 Score = 210 bits (106), Expect = 4e-51 Identities = 139/150 (92%) Strand = Plus / Plus Query: 200 aggaaaaagcactggaacaacttaaagttactgaaggaaaaactgtagccattggccaga 259 |||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||| Sbjct: 49471 aggaaaaagcactggagcagcttaaagttactgaagggaaaactgtagctgttggccaga 49530 Query: 260 agatggatcttgtgttctacactttgcaaattggccttttctacatggacttcgatctca 319 | ||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| Sbjct: 49531 aaatggatcttgtgttctacactttgcaaataggccttttccacatggactttgatctca 49590 Query: 320 tctcaaaatcaattgataaggcaaagaagt 349 |||||||||| ||||| ||||||||||||| Sbjct: 49591 tctcaaaatccattgacaaggcaaagaagt 49620 Score = 163 bits (82), Expect = 8e-37 Identities = 103/110 (93%) Strand = Plus / Plus Query: 1 gcgccgctgttcgagtcgctggccgccacgggcgtgctggagccggacgccgcactgctc 60 ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||| Sbjct: 46760 gcgccgctgttcgagtcgctggccgccgcgggcgtcctggagccggacgacgcgctgctc 46819 Query: 61 gccgagatgcgcgcccggatcgacgaggagatccgcaagctcgatgagaa 110 |||||||||||||| ||||||||||||||| ||||||||||||| ||||| Sbjct: 46820 gccgagatgcgcgcgcggatcgacgaggaggtccgcaagctcgacgagaa 46869 Score = 87.7 bits (44), Expect = 4e-14 Identities = 65/72 (90%) Strand = Plus / Plus Query: 111 aattgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaa 170 ||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| || || Sbjct: 49298 aattgctgatgctgaagagaatttgggtgagagcgaagtgcgtgaggcccatctggcgaa 49357 Query: 171 gtccttgtactt 182 ||||||||||| Sbjct: 49358 atccttgtactt 49369 Score = 79.8 bits (40), Expect = 9e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 111 aattgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaa 170 ||||||||| ||||||||||| ||||| ||| |||||||||||| |||||| | ||||| Sbjct: 18438 aattgctgacgctgaagagaatttgggtgaggttgaagtgcgtgaggcccatatagccaa 18497 Query: 171 gtccttgtactttgtaaaggttggcgagaagg 202 ||||||||||| ||| |||||| ||||||| Sbjct: 18498 atccttgtacttcataagggttggggagaagg 18529 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 112 attgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaag 171 |||||||| ||||||||||| ||||| | || |||||||||||| |||||||| || | Sbjct: 37846 attgctgacgctgaagagaatttgggtgggattgaagtgcgtgaggcccatctagctgaa 37905 Query: 172 tccttgtactt 182 ||||||||||| Sbjct: 37906 tccttgtactt 37916 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 69 gcgcgcccggatcgacgaggagatccgcaagctcga 104 |||||| ||||||||||||||| ||||||||||||| Sbjct: 37059 gcgcgcgcggatcgacgaggaggtccgcaagctcga 37094
>dbj|AP005293.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1653_F07, complete sequence Length = 110109 Score = 220 bits (111), Expect = 4e-54 Identities = 187/211 (88%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 350 tgtttgaggagggaggtgactgggagagaaagaacagattgaaagtgtacgaaggcctat 409 |||||||||| ||||| |||||||||||||||||| |||||||||| || |||||||||| Sbjct: 102706 tgtttgaggaaggaggcgactgggagagaaagaaccgattgaaagtatatgaaggcctat 102765 Query: 410 actgcatggcaactagaaacttcaagaaagctaccagcctgtttttggactccatctcaa 469 ||| ||||||||| |||||||||||||||||| ||||| | ||||| || |||||||||| Sbjct: 102766 acttcatggcaacgagaaacttcaagaaagctgccagcttatttttagattccatctcaa 102825 Query: 470 ctttcacaacctatgagctgtttccatacgacactttcatcttctatacagtcctcacga 529 |||||||||| || ||| |||||||||| || ||||| |||||||||||||| |||| | Sbjct: 102826 ctttcacaacttacgagttgtttccatatgatacttttgtcttctatacagtcatcacaa 102885 Query: 530 gtataatctcattgggatcgtgtatctctaa 560 | |||||| |||| ||||||||||||||||| Sbjct: 102886 gcataatcacatt-ggatcgtgtatctctaa 102915 Score = 210 bits (106), Expect = 4e-51 Identities = 139/150 (92%) Strand = Plus / Plus Query: 200 aggaaaaagcactggaacaacttaaagttactgaaggaaaaactgtagccattggccaga 259 |||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||| Sbjct: 102463 aggaaaaagcactggagcagcttaaagttactgaagggaaaactgtagctgttggccaga 102522 Query: 260 agatggatcttgtgttctacactttgcaaattggccttttctacatggacttcgatctca 319 | ||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| Sbjct: 102523 aaatggatcttgtgttctacactttgcaaataggccttttccacatggactttgatctca 102582 Query: 320 tctcaaaatcaattgataaggcaaagaagt 349 |||||||||| ||||| ||||||||||||| Sbjct: 102583 tctcaaaatccattgacaaggcaaagaagt 102612 Score = 163 bits (82), Expect = 8e-37 Identities = 103/110 (93%) Strand = Plus / Plus Query: 1 gcgccgctgttcgagtcgctggccgccacgggcgtgctggagccggacgccgcactgctc 60 ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||| Sbjct: 99752 gcgccgctgttcgagtcgctggccgccgcgggcgtcctggagccggacgacgcgctgctc 99811 Query: 61 gccgagatgcgcgcccggatcgacgaggagatccgcaagctcgatgagaa 110 |||||||||||||| ||||||||||||||| ||||||||||||| ||||| Sbjct: 99812 gccgagatgcgcgcgcggatcgacgaggaggtccgcaagctcgacgagaa 99861 Score = 127 bits (64), Expect = 4e-26 Identities = 103/114 (90%), Gaps = 4/114 (3%) Strand = Plus / Plus Query: 1 gcgccgctgttcgagtcgctggccgccacgggcgtgctgg---agccggacgccgca-ct 56 |||||||||||||||||||||||| || ||||||||||| ||||||||| |||| || Sbjct: 29708 gcgccgctgttcgagtcgctggccaccgcgggcgtgctgctcaagccggacgacgcagct 29767 Query: 57 gctcgccgagatgcgcgcccggatcgacgaggagatccgcaagctcgatgagaa 110 |||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| Sbjct: 29768 gctcgccgagatgcgcgcgcggatcgacgaggaggtccgcaagctcgacgagaa 29821 Score = 87.7 bits (44), Expect = 4e-14 Identities = 65/72 (90%) Strand = Plus / Plus Query: 111 aattgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaa 170 ||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| || || Sbjct: 102290 aattgctgatgctgaagagaatttgggtgagagcgaagtgcgtgaggcccatctggcgaa 102349 Query: 171 gtccttgtactt 182 ||||||||||| Sbjct: 102350 atccttgtactt 102361 Score = 79.8 bits (40), Expect = 9e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 111 aattgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaa 170 ||||||||| ||||||||||| ||||| ||| |||||||||||| |||||| | ||||| Sbjct: 71430 aattgctgacgctgaagagaatttgggtgaggttgaagtgcgtgaggcccatatagccaa 71489 Query: 171 gtccttgtactttgtaaaggttggcgagaagg 202 ||||||||||| ||| |||||| ||||||| Sbjct: 71490 atccttgtacttcataagggttggggagaagg 71521 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 112 attgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaag 171 |||||||| ||||||||||| ||||| | || |||||||||||| |||||||| || | Sbjct: 90838 attgctgacgctgaagagaatttgggtgggattgaagtgcgtgaggcccatctagctgaa 90897 Query: 172 tccttgtactt 182 ||||||||||| Sbjct: 90898 tccttgtactt 90908 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 69 gcgcgcccggatcgacgaggagatccgcaagctcga 104 |||||| ||||||||||||||| ||||||||||||| Sbjct: 90051 gcgcgcgcggatcgacgaggaggtccgcaagctcga 90086
>emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000223_09, complete sequence Length = 120583 Score = 182 bits (92), Expect = 8e-43 Identities = 183/212 (86%), Gaps = 1/212 (0%) Strand = Plus / Plus Query: 349 ttgtttgaggagggaggtgactgggagagaaagaacagattgaaagtgtacgaaggccta 408 |||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||| || Sbjct: 40158 ttgtttgaggagggtggtgattgggagaggaagaacagattgaaagtgtacgagggctta 40217 Query: 409 tactgcatggcaactagaaacttcaagaaagctaccagcctgtttttggactccatctca 468 ||||||||||| ||||||||||||||||||||| | ||| | |||||||| || || ||| Sbjct: 40218 tactgcatggccactagaaacttcaagaaagctgcaagcttatttttggattcaatttca 40277 Query: 469 actttcacaacctatgagctgtttccatacgacactttcatcttctatacagtcctcacg 528 || ||||||||||||||| |||| || || || || ||||| ||||| ||||| || || Sbjct: 40278 acattcacaacctatgagttgttcccctatgatacattcatattctacacagttcttaca 40337 Query: 529 agtataatctcattgggatcgtgtatctctaa 560 ||| | |||||||| |||||||||||| |||| Sbjct: 40338 agtgttatctcatt-ggatcgtgtatccctaa 40368 Score = 103 bits (52), Expect = 6e-19 Identities = 100/116 (86%) Strand = Plus / Plus Query: 208 gcactggaacaacttaaagttactgaaggaaaaactgtagccattggccagaagatggat 267 ||||| ||||| ||||||||||||||||||||||||||||| |||| || |||||||| Sbjct: 39913 gcactagaacagcttaaagttactgaaggaaaaactgtagctgttgggcaaaagatggac 39972 Query: 268 cttgtgttctacactttgcaaattggccttttctacatggacttcgatctcatctc 323 ||||| ||| ||||||| || ||||| ||||||| ||||| || ||||||||||| Sbjct: 39973 cttgttttccacactttacagattgggtttttctatatggattttgatctcatctc 40028 Score = 95.6 bits (48), Expect = 1e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 115 gctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaagtcc 174 ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| || Sbjct: 39737 gctgatgctgaagagaatttgggtgagagtgaagtgcgtgaagcccatctagccaaatcg 39796 Query: 175 ttgtactttgtaaaggttggcgagaagg 202 ||||| || ||| |||||| ||||||| Sbjct: 39797 ttgtatttcataagggttggagagaagg 39824 Score = 79.8 bits (40), Expect = 9e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 31 ggcgtgctggagccggacgccgcactgctcgccgagatgcgcgcccggatcgacgaggag 90 |||||||||||| ||||||| || |||||||| |||||||||| | ||||||| |||||| Sbjct: 39078 ggcgtgctggagacggacgctgcgctgctcgcggagatgcgcggcaggatcgaggaggag 39137 Query: 91 atccgcaagctcgatgagaa 110 ||||| ||||| || ||||| Sbjct: 39138 atccggaagcttgacgagaa 39157
>emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081L15, complete sequence Length = 150864 Score = 182 bits (92), Expect = 8e-43 Identities = 183/212 (86%), Gaps = 1/212 (0%) Strand = Plus / Plus Query: 349 ttgtttgaggagggaggtgactgggagagaaagaacagattgaaagtgtacgaaggccta 408 |||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||| || Sbjct: 106971 ttgtttgaggagggtggtgattgggagaggaagaacagattgaaagtgtacgagggctta 107030 Query: 409 tactgcatggcaactagaaacttcaagaaagctaccagcctgtttttggactccatctca 468 ||||||||||| ||||||||||||||||||||| | ||| | |||||||| || || ||| Sbjct: 107031 tactgcatggccactagaaacttcaagaaagctgcaagcttatttttggattcaatttca 107090 Query: 469 actttcacaacctatgagctgtttccatacgacactttcatcttctatacagtcctcacg 528 || ||||||||||||||| |||| || || || || ||||| ||||| ||||| || || Sbjct: 107091 acattcacaacctatgagttgttcccctatgatacattcatattctacacagttcttaca 107150 Query: 529 agtataatctcattgggatcgtgtatctctaa 560 ||| | |||||||| |||||||||||| |||| Sbjct: 107151 agtgttatctcatt-ggatcgtgtatccctaa 107181 Score = 103 bits (52), Expect = 6e-19 Identities = 100/116 (86%) Strand = Plus / Plus Query: 208 gcactggaacaacttaaagttactgaaggaaaaactgtagccattggccagaagatggat 267 ||||| ||||| ||||||||||||||||||||||||||||| |||| || |||||||| Sbjct: 106726 gcactagaacagcttaaagttactgaaggaaaaactgtagctgttgggcaaaagatggac 106785 Query: 268 cttgtgttctacactttgcaaattggccttttctacatggacttcgatctcatctc 323 ||||| ||| ||||||| || ||||| ||||||| ||||| || ||||||||||| Sbjct: 106786 cttgttttccacactttacagattgggtttttctatatggattttgatctcatctc 106841 Score = 95.6 bits (48), Expect = 1e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 115 gctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaagtcc 174 ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| || Sbjct: 106550 gctgatgctgaagagaatttgggtgagagtgaagtgcgtgaagcccatctagccaaatcg 106609 Query: 175 ttgtactttgtaaaggttggcgagaagg 202 ||||| || ||| |||||| ||||||| Sbjct: 106610 ttgtatttcataagggttggagagaagg 106637 Score = 79.8 bits (40), Expect = 9e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 31 ggcgtgctggagccggacgccgcactgctcgccgagatgcgcgcccggatcgacgaggag 90 |||||||||||| ||||||| || |||||||| |||||||||| | ||||||| |||||| Sbjct: 105891 ggcgtgctggagacggacgctgcgctgctcgcggagatgcgcggcaggatcgaggaggag 105950 Query: 91 atccgcaagctcgatgagaa 110 ||||| ||||| || ||||| Sbjct: 105951 atccggaagcttgacgagaa 105970
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 182 bits (92), Expect = 8e-43 Identities = 183/212 (86%), Gaps = 1/212 (0%) Strand = Plus / Plus Query: 349 ttgtttgaggagggaggtgactgggagagaaagaacagattgaaagtgtacgaaggccta 408 |||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||| || Sbjct: 24217746 ttgtttgaggagggtggtgattgggagaggaagaacagattgaaagtgtacgagggctta 24217805 Query: 409 tactgcatggcaactagaaacttcaagaaagctaccagcctgtttttggactccatctca 468 ||||||||||| ||||||||||||||||||||| | ||| | |||||||| || || ||| Sbjct: 24217806 tactgcatggccactagaaacttcaagaaagctgcaagcttatttttggattcaatttca 24217865 Query: 469 actttcacaacctatgagctgtttccatacgacactttcatcttctatacagtcctcacg 528 || ||||||||||||||| |||| || || || || ||||| ||||| ||||| || || Sbjct: 24217866 acattcacaacctatgagttgttcccctatgatacattcatattctacacagttcttaca 24217925 Query: 529 agtataatctcattgggatcgtgtatctctaa 560 ||| | |||||||| |||||||||||| |||| Sbjct: 24217926 agtgttatctcatt-ggatcgtgtatccctaa 24217956 Score = 103 bits (52), Expect = 6e-19 Identities = 100/116 (86%) Strand = Plus / Plus Query: 208 gcactggaacaacttaaagttactgaaggaaaaactgtagccattggccagaagatggat 267 ||||| ||||| ||||||||||||||||||||||||||||| |||| || |||||||| Sbjct: 24217501 gcactagaacagcttaaagttactgaaggaaaaactgtagctgttgggcaaaagatggac 24217560 Query: 268 cttgtgttctacactttgcaaattggccttttctacatggacttcgatctcatctc 323 ||||| ||| ||||||| || ||||| ||||||| ||||| || ||||||||||| Sbjct: 24217561 cttgttttccacactttacagattgggtttttctatatggattttgatctcatctc 24217616 Score = 95.6 bits (48), Expect = 1e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 115 gctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaagtcc 174 ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| || Sbjct: 24217325 gctgatgctgaagagaatttgggtgagagtgaagtgcgtgaagcccatctagccaaatcg 24217384 Query: 175 ttgtactttgtaaaggttggcgagaagg 202 ||||| || ||| |||||| ||||||| Sbjct: 24217385 ttgtatttcataagggttggagagaagg 24217412 Score = 79.8 bits (40), Expect = 9e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 31 ggcgtgctggagccggacgccgcactgctcgccgagatgcgcgcccggatcgacgaggag 90 |||||||||||| ||||||| || |||||||| |||||||||| | ||||||| |||||| Sbjct: 24216666 ggcgtgctggagacggacgctgcgctgctcgcggagatgcgcggcaggatcgaggaggag 24216725 Query: 91 atccgcaagctcgatgagaa 110 ||||| ||||| || ||||| Sbjct: 24216726 atccggaagcttgacgagaa 24216745
>emb|AL442114.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0811E11, complete sequence Length = 59348 Score = 182 bits (92), Expect = 8e-43 Identities = 183/212 (86%), Gaps = 1/212 (0%) Strand = Plus / Plus Query: 349 ttgtttgaggagggaggtgactgggagagaaagaacagattgaaagtgtacgaaggccta 408 |||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||| || Sbjct: 12201 ttgtttgaggagggtggtgattgggagaggaagaacagattgaaagtgtacgagggctta 12260 Query: 409 tactgcatggcaactagaaacttcaagaaagctaccagcctgtttttggactccatctca 468 ||||||||||| ||||||||||||||||||||| | ||| | |||||||| || || ||| Sbjct: 12261 tactgcatggccactagaaacttcaagaaagctgcaagcttatttttggattcaatttca 12320 Query: 469 actttcacaacctatgagctgtttccatacgacactttcatcttctatacagtcctcacg 528 || ||||||||||||||| |||| || || || || ||||| ||||| ||||| || || Sbjct: 12321 acattcacaacctatgagttgttcccctatgatacattcatattctacacagttcttaca 12380 Query: 529 agtataatctcattgggatcgtgtatctctaa 560 ||| | |||||||| |||||||||||| |||| Sbjct: 12381 agtgttatctcatt-ggatcgtgtatccctaa 12411 Score = 103 bits (52), Expect = 6e-19 Identities = 100/116 (86%) Strand = Plus / Plus Query: 208 gcactggaacaacttaaagttactgaaggaaaaactgtagccattggccagaagatggat 267 ||||| ||||| ||||||||||||||||||||||||||||| |||| || |||||||| Sbjct: 11956 gcactagaacagcttaaagttactgaaggaaaaactgtagctgttgggcaaaagatggac 12015 Query: 268 cttgtgttctacactttgcaaattggccttttctacatggacttcgatctcatctc 323 ||||| ||| ||||||| || ||||| ||||||| ||||| || ||||||||||| Sbjct: 12016 cttgttttccacactttacagattgggtttttctatatggattttgatctcatctc 12071 Score = 95.6 bits (48), Expect = 1e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 115 gctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaagtcc 174 ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| || Sbjct: 11783 gctgatgctgaagagaatttgggtgagagtgaagtgcgtgaagcccatctagccaaatcg 11842 Query: 175 ttgtactttgtaaaggttggcgagaagg 202 ||||| || ||| |||||| ||||||| Sbjct: 11843 ttgtatttcataagggttggagagaagg 11870 Score = 79.8 bits (40), Expect = 9e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 31 ggcgtgctggagccggacgccgcactgctcgccgagatgcgcgcccggatcgacgaggag 90 |||||||||||| ||||||| || |||||||| |||||||||| | ||||||| |||||| Sbjct: 11124 ggcgtgctggagacggacgctgcgctgctcgcggagatgcgcggcaggatcgaggaggag 11183 Query: 91 atccgcaagctcgatgagaa 110 ||||| ||||| || ||||| Sbjct: 11184 atccggaagcttgacgagaa 11203
>ref|XM_466567.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2208 Score = 127 bits (64), Expect = 4e-26 Identities = 103/114 (90%), Gaps = 4/114 (3%) Strand = Plus / Plus Query: 1 gcgccgctgttcgagtcgctggccgccacgggcgtgctgg---agccggacgccgca-ct 56 |||||||||||||||||||||||| || ||||||||||| ||||||||| |||| || Sbjct: 2092 gcgccgctgttcgagtcgctggccaccgcgggcgtgctgctcaagccggacgacgcagct 2151 Query: 57 gctcgccgagatgcgcgcccggatcgacgaggagatccgcaagctcgatgagaa 110 |||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| Sbjct: 2152 gctcgccgagatgcgcgcgcggatcgacgaggaggtccgcaagctcgacgagaa 2205
>dbj|AP006457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0038P01 Length = 148506 Score = 127 bits (64), Expect = 4e-26 Identities = 103/114 (90%), Gaps = 4/114 (3%) Strand = Plus / Plus Query: 1 gcgccgctgttcgagtcgctggccgccacgggcgtgctgg---agccggacgccgca-ct 56 |||||||||||||||||||||||| || ||||||||||| ||||||||| |||| || Sbjct: 124108 gcgccgctgttcgagtcgctggccaccgcgggcgtgctgctcaagccggacgacgcagct 124167 Query: 57 gctcgccgagatgcgcgcccggatcgacgaggagatccgcaagctcgatgagaa 110 |||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| Sbjct: 124168 gctcgccgagatgcgcgcgcggatcgacgaggaggtccgcaagctcgacgagaa 124221
>ref|XM_483067.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1470 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 8 tgttcgagtcgctggccgccacgggcgtgctggagccggacgccgcactgctcgccgaga 67 |||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| Sbjct: 385 tgttcgagtcgctggccgccacgggcgtgctggagccggacgacgcgctgctcaccgaga 326 Query: 68 tgcgcgcccggatcgacgaggag 90 |||||| || ||||| |||||| Sbjct: 325 tgcgcgtgcgaatcgatgaggag 303
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 8 tgttcgagtcgctggccgccacgggcgtgctggagccggacgccgcactgctcgccgaga 67 |||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| Sbjct: 24130370 tgttcgagtcgctggccgccacgggcgtgctggagccggacgacgcgctgctcaccgaga 24130311 Query: 68 tgcgcgcccggatcgacgaggag 90 |||||| || ||||| |||||| Sbjct: 24130310 tgcgcgtgcgaatcgatgaggag 24130288
>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0028A08 Length = 150818 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 8 tgttcgagtcgctggccgccacgggcgtgctggagccggacgccgcactgctcgccgaga 67 |||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| Sbjct: 83856 tgttcgagtcgctggccgccacgggcgtgctggagccggacgacgcgctgctcaccgaga 83797 Query: 68 tgcgcgcccggatcgacgaggag 90 |||||| || ||||| |||||| Sbjct: 83796 tgcgcgtgcgaatcgatgaggag 83774
>dbj|AK068044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132L02, full insert sequence Length = 1103 Score = 107 bits (54), Expect = 4e-20 Identities = 99/114 (86%) Strand = Plus / Plus Query: 69 gcgcgcccggatcgacgaggagatccgcaagctcgatgagaaaattgctgatgctgaaga 128 |||||| ||||||||||||||| ||||||||||||| | ||| |||||||| |||||||| Sbjct: 270 gcgcgcgcggatcgacgaggaggtccgcaagctcgacgggaagattgctgacgctgaaga 329 Query: 129 gaacttgggcgagagtgaagtgcgtgaagcccatcttgccaagtccttgtactt 182 ||| ||||| | || |||||||||||| |||||||| || | ||||||||||| Sbjct: 330 gaatttgggtgggattgaagtgcgtgaggcccatctagctgaatccttgtactt 383
>gb|BT014513.1| Lycopersicon esculentum clone 133900F, mRNA sequence Length = 1278 Score = 87.7 bits (44), Expect = 4e-14 Identities = 188/236 (79%) Strand = Plus / Plus Query: 205 aaagcactggaacaacttaaagttactgaaggaaaaactgtagccattggccagaagatg 264 |||||||| |||||||| || || ||||| ||||||||| || |||| || |||||| Sbjct: 306 aaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatg 365 Query: 265 gatcttgtgttctacactttgcaaattggccttttctacatggacttcgatctcatctca 324 || || |||||||| || ||||| || || | || || |||| || || |||||||| Sbjct: 366 gacctagtgttctataccttgcagatgggattatttgacttggattttgacctcatctct 425 Query: 325 aaatcaattgataaggcaaagaagttgtttgaggagggaggtgactgggagagaaagaac 384 |||| || |||||||||||||| || || || |||| ||||||||||||||||||||| Sbjct: 426 aaatgcatagataaggcaaagaaattattcgaaaaggggggtgactgggagagaaagaac 485 Query: 385 agattgaaagtgtacgaaggcctatactgcatggcaactagaaacttcaagaaagc 440 || ||||| ||||| ||||| | | ||||||| | ||| | |||||||||||||| Sbjct: 486 aggttgaaggtgtatgaagggttgttctgcatgtccactcgtaacttcaagaaagc 541 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 100 ctcgatgagaaaattgctgatgctgaaga 128 ||||||||||| ||||||||||| ||||| Sbjct: 201 ctcgatgagaagattgctgatgcagaaga 229
>dbj|AK065211.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002F23, full insert sequence Length = 3196 Score = 79.8 bits (40), Expect = 9e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 111 aattgctgatgctgaagagaacttgggcgagagtgaagtgcgtgaagcccatcttgccaa 170 ||||||||| ||||||||||| ||||| ||| |||||||||||| |||||| | ||||| Sbjct: 182 aattgctgacgctgaagagaatttgggtgaggttgaagtgcgtgaggcccatatagccaa 241 Query: 171 gtccttgtactttgtaaaggttggcgagaagg 202 ||||||||||| ||| |||||| ||||||| Sbjct: 242 atccttgtacttcataagggttggggagaagg 273
>gb|AF051233.1|AF051233 Picea mariana KIAA0107-like protein (Sb46) mRNA, partial cds Length = 980 Score = 77.8 bits (39), Expect = 3e-11 Identities = 135/167 (80%) Strand = Plus / Plus Query: 331 attgataaggcaaagaagttgtttgaggagggaggtgactgggagagaaagaacagattg 390 |||||||| || ||||| ||||||||||| || ||||| ||||| ||||| ||| || || Sbjct: 10 attgataaagctaagaatttgtttgaggaagggggtgattgggaaagaaaaaaccgactg 69 Query: 391 aaagtgtacgaaggcctatactgcatggcaactagaaacttcaagaaagctaccagcctg 450 || ||||| |||||||| ||||| ||| | || |||| |||||||||||| | || Sbjct: 70 aaggtgtatgaaggcctttactgtatgtctacacgaaatttcaagaaagctgctgagcta 129 Query: 451 tttttggactccatctcaactttcacaacctatgagctgtttccata 497 |||||||| || || ||||| |||||||| |||||||| || ||||| Sbjct: 130 tttttggattctatttcaacattcacaacatatgagcttttcccata 176
>ref|NM_189491.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 609 Score = 60.0 bits (30), Expect = 8e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 13 gagtcgctggccgccacgggcgtgctggagccggacgccgcactgctcgccgagatgcgc 72 |||||| |||||| || ||||||||||||||||| | ||| ||||||| |||||||||| Sbjct: 502 gagtcgttggccgtcaacggcgtgctggagccggatgacgcgctgctcgtcgagatgcgc 561 Query: 73 gcccggatcgacgaggag 90 | || ||||| |||||| Sbjct: 562 gtgcgaatcgatgaggag 579
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 60.0 bits (30), Expect = 8e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 13 gagtcgctggccgccacgggcgtgctggagccggacgccgcactgctcgccgagatgcgc 72 |||||| |||||| || ||||||||||||||||| | ||| ||||||| |||||||||| Sbjct: 43069900 gagtcgttggccgtcaacggcgtgctggagccggatgacgcgctgctcgtcgagatgcgc 43069959 Query: 73 gcccggatcgacgaggag 90 | || ||||| |||||| Sbjct: 43069960 gtgcgaatcgatgaggag 43069977
>dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0459B04 Length = 142475 Score = 60.0 bits (30), Expect = 8e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 13 gagtcgctggccgccacgggcgtgctggagccggacgccgcactgctcgccgagatgcgc 72 |||||| |||||| || ||||||||||||||||| | ||| ||||||| |||||||||| Sbjct: 66929 gagtcgttggccgtcaacggcgtgctggagccggatgacgcgctgctcgtcgagatgcgc 66988 Query: 73 gcccggatcgacgaggag 90 | || ||||| |||||| Sbjct: 66989 gtgcgaatcgatgaggag 67006
>ref|NM_118615.2| Arabidopsis thaliana unknown protein AT4G24820 transcript variant AT4G24820.1 mRNA, complete cds Length = 1595 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 331 attgataaggcaaagaagttgtttgaggagggaggtgactgggagagaaagaac 384 ||||| || ||||| || |||||||| ||||| |||||||||||||| |||||| Sbjct: 598 attgacaaagcaaaaaaattgtttgaagagggtggtgactgggagaggaagaac 651
>ref|NM_202882.1| Arabidopsis thaliana unknown protein AT4G24820 transcript variant AT4G24820.2 mRNA, complete cds Length = 1462 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 331 attgataaggcaaagaagttgtttgaggagggaggtgactgggagagaaagaac 384 ||||| || ||||| || |||||||| ||||| |||||||||||||| |||||| Sbjct: 598 attgacaaagcaaaaaaattgtttgaagagggtggtgactgggagaggaagaac 651
>gb|AY230838.1| Arabidopsis thaliana 26S proteasome subunit RPN7 (RPN7) mRNA, complete cds Length = 1421 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 331 attgataaggcaaagaagttgtttgaggagggaggtgactgggagagaaagaac 384 ||||| || ||||| || |||||||| ||||| |||||||||||||| |||||| Sbjct: 508 attgacaaagcaaaaaaattgtttgaagagggtggtgactgggagaggaagaac 561
>gb|BT011969.1| Arabidopsis thaliana At4g24820 mRNA sequence Length = 1161 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 331 attgataaggcaaagaagttgtttgaggagggaggtgactgggagagaaagaac 384 ||||| || ||||| || |||||||| ||||| |||||||||||||| |||||| Sbjct: 472 attgacaaagcaaaaaaattgtttgaagagggtggtgactgggagaggaagaac 525
>gb|BT000653.1| Arabidopsis thaliana clone RAFL05-08-I15 (R09884) putative proteasome regulatory subunit (At4g24820) mRNA, complete cds Length = 1443 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 331 attgataaggcaaagaagttgtttgaggagggaggtgactgggagagaaagaac 384 ||||| || ||||| || |||||||| ||||| |||||||||||||| |||||| Sbjct: 525 attgacaaagcaaaaaaattgtttgaagagggtggtgactgggagaggaagaac 578
>gb|AY093269.1| Arabidopsis thaliana putative proteasome regulatory subunit (At4g24820) mRNA, complete cds Length = 1446 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 331 attgataaggcaaagaagttgtttgaggagggaggtgactgggagagaaagaac 384 ||||| || ||||| || |||||||| ||||| |||||||||||||| |||||| Sbjct: 475 attgacaaagcaaaaaaattgtttgaagagggtggtgactgggagaggaagaac 528
>gb|AY054500.1| Arabidopsis thaliana putative proteasome regulatory subunit (At4g24820; F6I7.30) mRNA, complete cds Length = 1595 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 331 attgataaggcaaagaagttgtttgaggagggaggtgactgggagagaaagaac 384 ||||| || ||||| || |||||||| ||||| |||||||||||||| |||||| Sbjct: 598 attgacaaagcaaaaaaattgtttgaagagggtggtgactgggagaggaagaac 651
>emb|BX829044.1|CNS0A4HJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL63ZF02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1327 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 331 attgataaggcaaagaagttgtttgaggagggaggtgactgggagagaaagaac 384 ||||| || ||||| || |||||||| ||||| |||||||||||||| |||||| Sbjct: 474 attgacaaagcaaaaaaattgtttgaagagggtggtgactgggagaggaagaac 527
>emb|BX828527.1|CNS0A4CR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL13ZB05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1332 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 331 attgataaggcaaagaagttgtttgaggagggaggtgactgggagagaaagaac 384 ||||| || ||||| || |||||||| ||||| |||||||||||||| |||||| Sbjct: 495 attgacaaagcaaaaaaattgtttgaagagggtggtgactgggagaggaagaac 548
>gb|AY087847.1| Arabidopsis thaliana clone 38927 mRNA, complete sequence Length = 1482 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 331 attgataaggcaaagaagttgtttgaggagggaggtgactgggagagaaagaac 384 ||||| || ||||| || |||||||| ||||| |||||||||||||| |||||| Sbjct: 578 attgacaaagcaaaaaaattgtttgaagagggtggtgactgggagaggaagaac 631
>emb|AL161562.2|ATCHRIV62 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 62 Length = 197070 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 349 ttgtttgaggagggaggtgactgggagagaaagaac 384 |||||||| ||||| |||||||||||||| |||||| Sbjct: 65804 ttgtttgaagagggtggtgactgggagaggaagaac 65769
>emb|AL049657.1|ATF6I7 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I7 (ESSA project) Length = 95185 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 349 ttgtttgaggagggaggtgactgggagagaaagaac 384 |||||||| ||||| |||||||||||||| |||||| Sbjct: 36380 ttgtttgaagagggtggtgactgggagaggaagaac 36345
>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1006_A02 Length = 175153 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Minus Query: 56 tgctcgccgagatgcgcgcccggatcgacgag 87 |||||||||| ||||||||| ||||||||||| Sbjct: 3124 tgctcgccgacatgcgcgcctggatcgacgag 3093
>dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_F05 Length = 147472 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Minus Query: 56 tgctcgccgagatgcgcgcccggatcgacgag 87 |||||||||| ||||||||| ||||||||||| Sbjct: 58481 tgctcgccgacatgcgcgcctggatcgacgag 58450
>dbj|AK111370.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-A04, full insert sequence Length = 1236 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Minus Query: 56 tgctcgccgagatgcgcgcccggatcgacgag 87 |||||||||| ||||||||| ||||||||||| Sbjct: 136 tgctcgccgacatgcgcgcctggatcgacgag 105
>ref|NM_120596.3| Arabidopsis thaliana unknown protein AT5G05140 mRNA, complete cds Length = 2121 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 425 gaaacttcaagaaagctaccagc 447 ||||||||||||||||||||||| Sbjct: 1598 gaaacttcaagaaagctaccagc 1620
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 59 tcgccgagatgcgcgcccggatc 81 ||||||||||||||||||||||| Sbjct: 1450599 tcgccgagatgcgcgcccggatc 1450577
>gb|AY081599.1| Arabidopsis thaliana unknown protein (At5g05140) mRNA, complete cds Length = 930 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 425 gaaacttcaagaaagctaccagc 447 ||||||||||||||||||||||| Sbjct: 654 gaaacttcaagaaagctaccagc 676
>gb|AY062787.1| Arabidopsis thaliana Unknown protein (At5g05140; K2A11.1) mRNA, complete cds Length = 1275 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 425 gaaacttcaagaaagctaccagc 447 ||||||||||||||||||||||| Sbjct: 752 gaaacttcaagaaagctaccagc 774
>emb|BX829486.1|CNS0A1MC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB16ZG02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2063 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 425 gaaacttcaagaaagctaccagc 447 ||||||||||||||||||||||| Sbjct: 1596 gaaacttcaagaaagctaccagc 1618
>dbj|AB018111.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2A11 Length = 29292 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 425 gaaacttcaagaaagctaccagc 447 ||||||||||||||||||||||| Sbjct: 2653 gaaacttcaagaaagctaccagc 2675
>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome Length = 1796226 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 221 ttaaagttactgaaggaaaaactgt 245 ||||||||||||||||| ||||||| Sbjct: 198964 ttaaagttactgaaggacaaactgt 198988
>ref|XM_594787.2| PREDICTED: Bos taurus similar to SNF2 histone linker PHD RING helicase (LOC516630), partial mRNA Length = 3917 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 318 catctcaaaatcaattgataa 338 ||||||||||||||||||||| Sbjct: 597 catctcaaaatcaattgataa 617
>gb|AC135636.4| Mus musculus BAC clone RP23-268G16 from chromosome 18, complete sequence Length = 160531 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 357 ggagggaggtgactgggagagaaag 381 ||||||||| ||||||||||||||| Sbjct: 46239 ggagggaggggactgggagagaaag 46263
>gb|AC165173.2| Zea mays clone ZMMBBb-125O19, complete sequence Length = 157660 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 cttgccaagtccttgtacttt 183 ||||||||||||||||||||| Sbjct: 10443 cttgccaagtccttgtacttt 10463
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 61 gccgagatgcgcgcccggatcgacg 85 ||||||| ||||||||||||||||| Sbjct: 18005 gccgagacgcgcgcccggatcgacg 17981
>gb|AC113380.2| Homo sapiens chromosome 5 clone RP11-304B20, complete sequence Length = 143534 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 324 aaaatcaattgataaggcaaa 344 ||||||||||||||||||||| Sbjct: 94692 aaaatcaattgataaggcaaa 94712
>gb|AC166644.7| Mus musculus chromosome 1, clone RP23-375C6, complete sequence Length = 175851 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 368 actgggagagaaagaacagat 388 ||||||||||||||||||||| Sbjct: 40771 actgggagagaaagaacagat 40791
>gb|AY664416.1| Zea mays cultivar Mo17 locus bz, complete sequence Length = 203581 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 cttgccaagtccttgtacttt 183 ||||||||||||||||||||| Sbjct: 156702 cttgccaagtccttgtacttt 156722
>dbj|AP002760.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-795E18, complete sequence Length = 211673 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 aaaactgtagccattggccag 258 ||||||||||||||||||||| Sbjct: 59446 aaaactgtagccattggccag 59466
>gb|AC167562.5| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940122D9, complete sequence Length = 114898 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 ctggccgccacgggcgtgctg 39 ||||||||||||||||||||| Sbjct: 51906 ctggccgccacgggcgtgctg 51926
>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome Length = 1796846 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 221 ttaaagttactgaaggaaaaactgt 245 ||||||||||||||||| ||||||| Sbjct: 198958 ttaaagttactgaaggacaaactgt 198982
>gb|AC101299.16| Mus musculus chromosome 1, clone RP23-103M17, complete sequence Length = 164091 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 368 actgggagagaaagaacagat 388 ||||||||||||||||||||| Sbjct: 127310 actgggagagaaagaacagat 127330
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 ccggatcgacgaggagatcc 94 |||||||||||||||||||| Sbjct: 336820 ccggatcgacgaggagatcc 336839
>gb|AC115629.3| Mus musculus BAC clone RP23-74J16 from chromosome 5, complete sequence Length = 242126 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 aattggccttttctacatgg 307 |||||||||||||||||||| Sbjct: 233206 aattggccttttctacatgg 233225
>gb|AC127250.3| Mus musculus BAC clone RP24-482H23 from chromosome 3, complete sequence Length = 136942 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 cactttgcaaattggccttt 298 |||||||||||||||||||| Sbjct: 52843 cactttgcaaattggccttt 52824
>gb|AC112662.7| Mus musculus chromosome 5, clone RP23-467F2, complete sequence Length = 200679 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 aattggccttttctacatgg 307 |||||||||||||||||||| Sbjct: 188928 aattggccttttctacatgg 188909
>gb|AC112677.8| Mus musculus chromosome 3, clone RP23-176J23, complete sequence Length = 215247 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 cactttgcaaattggccttt 298 |||||||||||||||||||| Sbjct: 1660 cactttgcaaattggccttt 1679
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 tcgccgagatgcgcgcccgg 78 |||||||||||||||||||| Sbjct: 3048266 tcgccgagatgcgcgcccgg 3048247
>emb|AL359376.22| Human DNA sequence from clone RP11-366K17 on chromosome 1, complete sequence Length = 46975 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 aactagaaacttcaagaaag 439 |||||||||||||||||||| Sbjct: 22889 aactagaaacttcaagaaag 22908
>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome Length = 1581384 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 agagaaagaacagattgaaa 393 |||||||||||||||||||| Sbjct: 81273 agagaaagaacagattgaaa 81292
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 62 ccgagatgcgcgcccggatcgacg 85 |||||| ||||||||||||||||| Sbjct: 107104 ccgagacgcgcgcccggatcgacg 107081
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 17 cgctggccgccacgggcgtgctgg 40 ||||||||||| |||||||||||| Sbjct: 312572 cgctggccgccgcgggcgtgctgg 312549
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 17 cgctggccgccacgggcgtgctgg 40 ||||||||||| |||||||||||| Sbjct: 76363 cgctggccgccgcgggcgtgctgg 76340
>emb|CR550304.13| Zebrafish DNA sequence from clone CH211-150I13 in linkage group 13, complete sequence Length = 118999 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 aaagcactggaacaacttaa 224 |||||||||||||||||||| Sbjct: 47307 aaagcactggaacaacttaa 47326
>gb|AC109486.2| Homo sapiens chromosome 5 clone RP11-546M4, complete sequence Length = 202405 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 tagaaacttcaagaaagcta 442 |||||||||||||||||||| Sbjct: 94589 tagaaacttcaagaaagcta 94570
>gb|AC084091.5| Homo sapiens chromosome 8, clone CTD-2532E22, complete sequence Length = 183486 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 gatctcatctcaaaatcaat 332 |||||||||||||||||||| Sbjct: 19290 gatctcatctcaaaatcaat 19271
>gb|AC092658.2| Homo sapiens BAC clone RP11-476C8 from 4, complete sequence Length = 130932 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 464 tctcaactttcacaacctat 483 |||||||||||||||||||| Sbjct: 111030 tctcaactttcacaacctat 111049
>gb|AC091922.2| Homo sapiens chromosome 5 clone RP11-263N7, complete sequence Length = 150989 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 tagaaacttcaagaaagcta 442 |||||||||||||||||||| Sbjct: 41883 tagaaacttcaagaaagcta 41902
>gb|AC018422.9| Homo sapiens, clone RP11-19G4, complete sequence Length = 157508 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 gatctcatctcaaaatcaat 332 |||||||||||||||||||| Sbjct: 150600 gatctcatctcaaaatcaat 150581
>gb|AC008818.7| Homo sapiens chromosome 5 clone CTD-2124H11, complete sequence Length = 152685 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 tagaaacttcaagaaagcta 442 |||||||||||||||||||| Sbjct: 115530 tagaaacttcaagaaagcta 115511
>gb|AC153646.3| Mus musculus BAC clone RP24-493K8 from chromosome 13, complete sequence Length = 166314 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 355 gaggagggaggtgactgggagaga 378 |||||||||||||| ||||||||| Sbjct: 128498 gaggagggaggtgaatgggagaga 128475
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tcgagtcgctggccgccacg 30 |||||||||||||||||||| Sbjct: 1850841 tcgagtcgctggccgccacg 1850822
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ctcgccgagatgcgcgcccg 77 |||||||||||||||||||| Sbjct: 57683 ctcgccgagatgcgcgcccg 57702
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cgaggagatccgcaagctcg 103 |||||||||||||||||||| Sbjct: 719714 cgaggagatccgcaagctcg 719695
>gb|AC005598.6|AC005598 Homo sapiens chromosome 4 clone C0024K08 map 4p16, complete sequence Length = 166743 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 aaagaagttgtttgaggagg 361 |||||||||||||||||||| Sbjct: 82430 aaagaagttgtttgaggagg 82411
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 gctgttcgagtcgctggccg 25 |||||||||||||||||||| Sbjct: 1701706 gctgttcgagtcgctggccg 1701725
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ctcgccgagatgcgcgcccg 77 |||||||||||||||||||| Sbjct: 1854519 ctcgccgagatgcgcgcccg 1854500
>gb|AC163671.5| Mus musculus BAC clone RP23-21K2 from chromosome 3, complete sequence Length = 215382 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 cactttgcaaattggccttt 298 |||||||||||||||||||| Sbjct: 208235 cactttgcaaattggccttt 208254
>emb|AL451009.3| Human DNA sequence from clone RP11-440G22 on chromosome 1, complete sequence Length = 68697 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 aactagaaacttcaagaaag 439 |||||||||||||||||||| Sbjct: 15807 aactagaaacttcaagaaag 15826
>emb|AL844594.4| Mouse DNA sequence from clone RP23-260P5 on chromosome X, complete sequence Length = 82772 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 ggtgactgggagagaaagaa 383 |||||||||||||||||||| Sbjct: 38214 ggtgactgggagagaaagaa 38195 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,733,296 Number of Sequences: 3902068 Number of extensions: 5733296 Number of successful extensions: 114899 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114153 Number of HSP's gapped (non-prelim): 735 length of query: 560 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 537 effective length of database: 17,143,297,704 effective search space: 9205950867048 effective search space used: 9205950867048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
