ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal9g06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10, complete sequence Length = 156772 Score = 155 bits (78), Expect = 2e-34 Identities = 120/134 (89%) Strand = Plus / Minus Query: 313 ccaagggcatttataggtgaaattggggttctgaagaagataacggatgacacgatgaca 372 ||||||||||| ||||||||||| || ||||||||||||| ||||||||| |||||||| Sbjct: 81960 ccaagggcattaataggtgaaatcggagttctgaagaagagaacggatgagacgatgacc 81901 Query: 373 acaactcgcttgacagagtttgcaacagaatgggtcacaggtgaaattctggccaataag 432 |||||||| |||||| |||| ||||||||||||||||||||||| | ||| |||||||| Sbjct: 81900 acaactcgtttgacacagttggcaacagaatgggtcacaggtgatactctagccaataaa 81841 Query: 433 ctatatgaaacctg 446 ||||| |||||||| Sbjct: 81840 ctataagaaacctg 81827 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 442 acctgttggtaaaaatggaaacaagtgccagcaatggccgctttcacgcatagttcttga 501 ||||||||||||||||| |||||||||||||||| || ||||||| |||||||| || Sbjct: 81615 acctgttggtaaaaatgaaaacaagtgccagcaagagcagctttcatacatagttcctgt 81556 Query: 502 agatt 506 ||||| Sbjct: 81555 agatt 81551 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 239 atgcagcctttgcctttggttttgccttcttgaatctagagtacaggaaaac 290 |||||| ||| ||||||||||| || || ||||| ||||||||||||||||| Sbjct: 82120 atgcagtcttagcctttggtttagcttttttgaacctagagtacaggaaaac 82069
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 155 bits (78), Expect = 2e-34 Identities = 120/134 (89%) Strand = Plus / Minus Query: 313 ccaagggcatttataggtgaaattggggttctgaagaagataacggatgacacgatgaca 372 ||||||||||| ||||||||||| || ||||||||||||| ||||||||| |||||||| Sbjct: 4195481 ccaagggcattaataggtgaaatcggagttctgaagaagagaacggatgagacgatgacc 4195422 Query: 373 acaactcgcttgacagagtttgcaacagaatgggtcacaggtgaaattctggccaataag 432 |||||||| |||||| |||| ||||||||||||||||||||||| | ||| |||||||| Sbjct: 4195421 acaactcgtttgacacagttggcaacagaatgggtcacaggtgatactctagccaataaa 4195362 Query: 433 ctatatgaaacctg 446 ||||| |||||||| Sbjct: 4195361 ctataagaaacctg 4195348 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 442 acctgttggtaaaaatggaaacaagtgccagcaatggccgctttcacgcatagttcttga 501 ||||||||||||||||| |||||||||||||||| || ||||||| |||||||| || Sbjct: 4195136 acctgttggtaaaaatgaaaacaagtgccagcaagagcagctttcatacatagttcctgt 4195077 Query: 502 agatt 506 ||||| Sbjct: 4195076 agatt 4195072 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 239 atgcagcctttgcctttggttttgccttcttgaatctagagtacaggaaaac 290 |||||| ||| ||||||||||| || || ||||| ||||||||||||||||| Sbjct: 4195641 atgcagtcttagcctttggtttagcttttttgaacctagagtacaggaaaac 4195590
>ref|XM_550285.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1652 Score = 91.7 bits (46), Expect = 2e-15 Identities = 103/122 (84%) Strand = Plus / Minus Query: 306 accagttccaagggcatttataggtgaaattggggttctgaagaagataacggatgacac 365 ||||||||| || ||||| | |||||||||||||||||||||||||| ||| || | ||| Sbjct: 1342 accagttcctagtgcattgacaggtgaaattggggttctgaagaagagaacagacgccac 1283 Query: 366 gatgacaacaactcgcttgacagagtttgcaacagaatgggtcacaggtgaaattctggc 425 |||||| || || |||||||| |||| || ||||| ||||| |||||||| | |||||| Sbjct: 1282 gatgacgaccacacgcttgacgcagttggcgacagagtgggtgacaggtgacactctggc 1223 Query: 426 ca 427 || Sbjct: 1222 ca 1221
>dbj|AK060343.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-E01, full insert sequence Length = 1652 Score = 91.7 bits (46), Expect = 2e-15 Identities = 103/122 (84%) Strand = Plus / Minus Query: 306 accagttccaagggcatttataggtgaaattggggttctgaagaagataacggatgacac 365 ||||||||| || ||||| | |||||||||||||||||||||||||| ||| || | ||| Sbjct: 1342 accagttcctagtgcattgacaggtgaaattggggttctgaagaagagaacagacgccac 1283 Query: 366 gatgacaacaactcgcttgacagagtttgcaacagaatgggtcacaggtgaaattctggc 425 |||||| || || |||||||| |||| || ||||| ||||| |||||||| | |||||| Sbjct: 1282 gatgacgaccacacgcttgacgcagttggcgacagagtgggtgacaggtgacactctggc 1223 Query: 426 ca 427 || Sbjct: 1222 ca 1221
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 81.8 bits (41), Expect = 2e-12 Identities = 86/101 (85%) Strand = Plus / Minus Query: 327 aggtgaaattggggttctgaagaagataacggatgacacgatgacaacaactcgcttgac 386 |||||||||||||||||||||||||| ||| || | ||||||||| || || |||||||| Sbjct: 3712204 aggtgaaattggggttctgaagaagagaacagacgccacgatgacgaccacacgcttgac 3712145 Query: 387 agagtttgcaacagaatgggtcacaggtgaaattctggcca 427 |||| || ||||| ||||| |||||||| | |||||||| Sbjct: 3712144 gcagttggcgacagagtgggtgacaggtgacactctggcca 3712104
>dbj|AP003282.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0583G08 Length = 135295 Score = 81.8 bits (41), Expect = 2e-12 Identities = 86/101 (85%) Strand = Plus / Minus Query: 327 aggtgaaattggggttctgaagaagataacggatgacacgatgacaacaactcgcttgac 386 |||||||||||||||||||||||||| ||| || | ||||||||| || || |||||||| Sbjct: 120684 aggtgaaattggggttctgaagaagagaacagacgccacgatgacgaccacacgcttgac 120625 Query: 387 agagtttgcaacagaatgggtcacaggtgaaattctggcca 427 |||| || ||||| ||||| |||||||| | |||||||| Sbjct: 120624 gcagttggcgacagagtgggtgacaggtgacactctggcca 120584
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 ggaaaacaccgagcagagccag 305 |||||||||||||||||||||| Sbjct: 4438154 ggaaaacaccgagcagagccag 4438133
>gb|AC171263.1| Pan troglodytes chromosome X clone PTB-018K13 map human ortholog p11.4, complete sequence Length = 147595 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 318 ggcatttataggtgaaattgg 338 ||||||||||||||||||||| Sbjct: 100368 ggcatttataggtgaaattgg 100348
>gb|AC122349.4| Mus musculus BAC clone RP23-383O11 from chromosome 10, complete sequence Length = 188688 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 agagttttgacagtgctattt 53 ||||||||||||||||||||| Sbjct: 43706 agagttttgacagtgctattt 43726
>emb|AL606804.11| Human DNA sequence from clone RP11-978I15 on chromosome 1 Contains the 3' end of the CIAS1 gene for cold autoinflammatory syndrome 1, the gene for a novel 7 transmembrane receptor (rhodopsin family) protein, a 7 transmembrane receptor (rhodopsin family) pseudogene, two novel genes (LOC148823, LOC148824), the OR2C3 gene for olfactory receptor family 2 subfamily C member 3, the 3' end of a novel gene, the OR2G2 for olfactory receptor family 2 subfamily G member 2, the OR2G3 for olfactory receptor family 2 subfamily G member 3, the gene for a novel protein similar to Olfactory receptor 5AV1 (LOC127617) and three CpG islands, complete sequence Length = 185467 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 gacagagtttgcaacagaatg 404 ||||||||||||||||||||| Sbjct: 7670 gacagagtttgcaacagaatg 7650
>emb|AL627402.10| Human DNA sequence from clone RP11-204C16 on chromosome X Contains part of the CASK gene for calcium/calmodulin-dependent serine protein kinase (MAGUK family), the GPR34 gene for G protein-coupled receptor 34, the GPR82 gene for G protein-coupled receptor 82, a tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide (YWHAZ) pseudogene and a CpG island, complete sequence Length = 132290 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 318 ggcatttataggtgaaattgg 338 ||||||||||||||||||||| Sbjct: 108665 ggcatttataggtgaaattgg 108645
>gb|AC010615.9| Homo sapiens chromosome 19 clone CTD-2561J22, complete sequence Length = 215962 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 ctttggttttgccttcttgaa 272 ||||||||||||||||||||| Sbjct: 86683 ctttggttttgccttcttgaa 86703
>gb|AC093211.3| Homo sapiens chromosome 5 clone CTD-2020P3, complete sequence Length = 141894 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 ttccaagggcatttataggtg 331 ||||||||||||||||||||| Sbjct: 46007 ttccaagggcatttataggtg 46027
>gb|AC026749.5|AC026749 Homo sapiens chromosome 5 clone RP11-415K6, complete sequence Length = 184777 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 ttccaagggcatttataggtg 331 ||||||||||||||||||||| Sbjct: 62746 ttccaagggcatttataggtg 62766
>gb|AC010491.4| Homo sapiens chromosome 5 clone CTD-2335I23, complete sequence Length = 142056 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 311 ttccaagggcatttataggtg 331 ||||||||||||||||||||| Sbjct: 58344 ttccaagggcatttataggtg 58324
>gb|AC091981.4| Homo sapiens chromosome 5 clone RP11-549L3, complete sequence Length = 187685 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 444 ctgttggtaaaaatggaaacaagtg 468 ||||| ||||||||||||||||||| Sbjct: 25939 ctgtttgtaaaaatggaaacaagtg 25963
>ref|NM_001036512.1| Arabidopsis thaliana nucleic acid binding / zinc ion binding AT4G06634 transcript variant AT4G06634.2 mRNA, complete cds Length = 1574 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 aatgggtcacaggtgaaatt 420 |||||||||||||||||||| Sbjct: 263 aatgggtcacaggtgaaatt 282
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome Length = 2427734 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 caccacaaccttcagaaaaa 84 |||||||||||||||||||| Sbjct: 1999305 caccacaaccttcagaaaaa 1999286
>gb|CP000015.1| Borrelia garinii PBi plasmid lp54, complete sequence Length = 55560 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 tattctcttgaaaagagttttgac 43 ||||||| |||||||||||||||| Sbjct: 538 tattctcatgaaaagagttttgac 561
>gb|AY157515.1| Rattus norvegicus N-methyl-D-aspartate receptor 1 (Grin1) gene, exons 1 through 6 and partial cds; alternatively spliced Length = 14641 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 tttgcctttggttttgcctt 266 |||||||||||||||||||| Sbjct: 13180 tttgcctttggttttgcctt 13161
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 cgatgacaacaactcgcttg 384 |||||||||||||||||||| Sbjct: 2773170 cgatgacaacaactcgcttg 2773189
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 tttgcctttggttttgcctt 266 |||||||||||||||||||| Sbjct: 4294715 tttgcctttggttttgcctt 4294696
>gb|AC132835.7| Mus musculus chromosome 1, clone RP24-490C20, complete sequence Length = 148948 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 17 tcttattctcttgaaaagagtttt 40 ||||||||||||||||| |||||| Sbjct: 87533 tcttattctcttgaaaaaagtttt 87510
>ref|XM_429816.1| PREDICTED: Gallus gallus LOC421159 (LOC421159), mRNA Length = 906 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 tgcagcctttgcctttggtt 259 |||||||||||||||||||| Sbjct: 651 tgcagcctttgcctttggtt 632
>gb|AY258275.1| Cucumis sativus Calypso ribosomal protein L5 (rpl5) gene, complete cds; mitochondrial gene for mitochondrial product Length = 8626 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 ttatgcagcctttgcctttggttt 260 ||||| |||||||||||||||||| Sbjct: 2802 ttatggagcctttgcctttggttt 2825
>gb|AY258273.1| Cucumis sativus MSC16 ribosomal protein L5 (rpl5) gene, complete cds; mitochondrial gene for mitochondrial product Length = 13495 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 ttatgcagcctttgcctttggttt 260 ||||| |||||||||||||||||| Sbjct: 7319 ttatggagcctttgcctttggttt 7342
>gb|AY258270.1| Cucumis sativus MSC16 mitochondrial ribosomal protein L5 (rpl5) gene, complete cds; and JLV5 deletion front junction sequence Length = 3148 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 ttatgcagcctttgcctttggttt 260 ||||| |||||||||||||||||| Sbjct: 1211 ttatggagcctttgcctttggttt 1234
>emb|AL512598.11| Human DNA sequence from clone RP11-165A20 on chromosome 10 Contains the 5' end of the gene for HHGP protein (HHGP) (FLJ11888), the gene for a novel protein similar to secreted frizzled-related protein 4 SFRP4 (FLJ37702), the gene for a novel protein similar to threonine synthase, containing FLJ2202 and FLJ37043 and two CpG islands, complete sequence Length = 139491 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 tgatcctgatccttctgaacctaa 215 ||||| |||||||||||||||||| Sbjct: 22109 tgatcatgatccttctgaacctaa 22132
>emb|AL391099.12| Human DNA sequence from clone RP11-178A10 on chromosome 10 Contains a novel gene (FLJ34785 FLJ33470), a novel gene and a CpG island, complete sequence Length = 123083 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tcagaaaaatcttctagaca 95 |||||||||||||||||||| Sbjct: 59881 tcagaaaaatcttctagaca 59900
>emb|AL354713.7| Human DNA sequence from clone RP11-498A13 on chromosome 1 Contains a processed pseudogene for nuclear receptor binding factor 2 (NRBF2), a processed pseudogene similar to part of olfactory receptor, family 11, subfamily H, member 6 (OR11H6) and the 5' end of the CD53 gene for CD53 antigen, complete sequence Length = 138370 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 cttcagaaaaatcttctagacaag 97 |||||||||||| ||||||||||| Sbjct: 14492 cttcagaaaaatattctagacaag 14515
>gb|DQ270853.1| Mustela vison clone I274 microsatellite Mvi4090 sequence Length = 808 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 ccaaataagaagatgagata 127 |||||||||||||||||||| Sbjct: 175 ccaaataagaagatgagata 194
>gb|AC079232.7| Homo sapiens BAC clone RP11-360H22 from 4, complete sequence Length = 169281 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 agatgagataacatggtgga 137 |||||||||||||||||||| Sbjct: 88686 agatgagataacatggtgga 88667
>gb|AF372833.1|AF372833 Oryza sativa phosphoenolpyruvate/phosphate translocator mRNA, complete cds Length = 1588 Score = 40.1 bits (20), Expect = 7.1 Identities = 41/48 (85%) Strand = Plus / Minus Query: 345 gaagaagataacggatgacacgatgacaacaactcgcttgacagagtt 392 |||||| | |||||||| ||| ||||| || |||||||||||| |||| Sbjct: 1165 gaagaacagaacggatgtcacaatgaccaccactcgcttgacacagtt 1118
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.1 Identities = 41/48 (85%) Strand = Plus / Plus Query: 345 gaagaagataacggatgacacgatgacaacaactcgcttgacagagtt 392 |||||| | |||||||| ||| ||||| || |||||||||||| |||| Sbjct: 7168523 gaagaacagaacggatgtcacaatgaccaccactcgcttgacacagtt 7168570
>dbj|AB162351.1| Drosophila sechellia genes, CG11099 to CG8914 region, complete cds Length = 63744 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 gcctttggttttgccttctt 269 |||||||||||||||||||| Sbjct: 16517 gcctttggttttgccttctt 16498
>gb|AC010722.2|AC010722 Homo sapiens BAC clone RP11-122L9 from Y, complete sequence Length = 160723 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 tttgcctttggttttgcctt 266 |||||||||||||||||||| Sbjct: 33153 tttgcctttggttttgcctt 33134
>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1381_H04 Length = 130961 Score = 40.1 bits (20), Expect = 7.1 Identities = 41/48 (85%) Strand = Plus / Plus Query: 345 gaagaagataacggatgacacgatgacaacaactcgcttgacagagtt 392 |||||| | |||||||| ||| ||||| || |||||||||||| |||| Sbjct: 20628 gaagaacagaacggatgtcacaatgaccaccactcgcttgacacagtt 20675
>dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0592C05 Length = 150478 Score = 40.1 bits (20), Expect = 7.1 Identities = 41/48 (85%) Strand = Plus / Plus Query: 345 gaagaagataacggatgacacgatgacaacaactcgcttgacagagtt 392 |||||| | |||||||| ||| ||||| || |||||||||||| |||| Sbjct: 120602 gaagaacagaacggatgtcacaatgaccaccactcgcttgacacagtt 120649
>dbj|AB073162.1| Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC clone:F8H12 Length = 92597 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 aatgggtcacaggtgaaatt 420 |||||||||||||||||||| Sbjct: 17123 aatgggtcacaggtgaaatt 17104
>dbj|AK071036.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080P10, full insert sequence Length = 1672 Score = 40.1 bits (20), Expect = 7.1 Identities = 41/48 (85%) Strand = Plus / Minus Query: 345 gaagaagataacggatgacacgatgacaacaactcgcttgacagagtt 392 |||||| | |||||||| ||| ||||| || |||||||||||| |||| Sbjct: 1232 gaagaacagaacggatgtcacaatgaccaccactcgcttgacacagtt 1185
>dbj|AP000941.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-861M13, complete sequence Length = 199321 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 gacagagtttgcaacagaat 403 |||||||||||||||||||| Sbjct: 73672 gacagagtttgcaacagaat 73653
>gb|AC004388.1|AC004388 Homo Sapiens Chromosome X clone bWXD306, complete sequence Length = 243041 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 tttgcctttggttttgcctt 266 |||||||||||||||||||| Sbjct: 82766 tttgcctttggttttgcctt 82747
>emb|AL136374.4| Human DNA sequence from clone RP1-244G5 on chromosome 1q24.3-25.3, complete sequence Length = 119853 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 cttcagaaaaatcttctagacaag 97 |||||||||||| ||||||||||| Sbjct: 50432 cttcagaaaaatattctagacaag 50455 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,266,205 Number of Sequences: 3902068 Number of extensions: 5266205 Number of successful extensions: 104713 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104445 Number of HSP's gapped (non-prelim): 268 length of query: 522 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 499 effective length of database: 17,143,297,704 effective search space: 8554505554296 effective search space used: 8554505554296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
