ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags11j09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YP133_YEAST (P19541) Putative transcriptional regulatory protein... 30 4.4
2MAPT_ARATH (Q9T041) Microtubule-associated protein TORTIFOLIA1 (... 29 7.5
3ALF1_SYNY3 (P74309) Fructose-bisphosphate aldolase class 1 (EC 4... 28 9.7

>YP133_YEAST (P19541) Putative transcriptional regulatory protein YPL133C|
          Length = 446

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +2

Query: 197 NAGNQITSVYKYTNMLGNPLLAEKELALASRSGL-FSSSMQKSHTP 331
           N G++ +S+ ++ +ML NPLL +  L+ +S S +   +  Q + +P
Sbjct: 128 NVGSEFSSLNEFLSMLENPLLTQTSLSSSSASNVHLENGSQTTQSP 173



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>MAPT_ARATH (Q9T041) Microtubule-associated protein TORTIFOLIA1|
           (Microtubule-associated protein SPIRAL2) (Protein
           CONVOLUTA)
          Length = 864

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = -1

Query: 130 MHRILLHWKDELLNILFDDKASPIGLPTDDAAKAAHRMRSSC 5
           ++ I L W  +LL ++  D A   G+P +   +  + ++ +C
Sbjct: 789 LYDICLSWSQQLLELVLQDGADTFGVPMELKTEILYNLQDAC 830



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>ALF1_SYNY3 (P74309) Fructose-bisphosphate aldolase class 1 (EC 4.1.2.13)|
           (Fructose-biphosphate aldolase class I) (FBP aldolase)
          Length = 300

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 282 QVDLVCSHQACKSLIHRRVLLSHMKKLLEGNW 377
           +VD+ CS +A    + ++ +L H+ +L +G W
Sbjct: 183 EVDIHCSEKAQAEALLKQAMLKHLNQLPKGQW 214


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,405,576
Number of Sequences: 219361
Number of extensions: 1260415
Number of successful extensions: 2782
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2782
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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