ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags11j06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF129479.1| Hordeum vulgare subsp. vulgare cultivar Albacete HAK2 (HAK2) mRNA, complete cds Length = 2840 Score = 1120 bits (565), Expect = 0.0 Identities = 584/589 (99%), Gaps = 1/589 (0%) Strand = Plus / Plus Query: 2 gagcggtacctcatcgggcgcatcggacccaggcagtaccggatgtaccggtgcattgtg 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1976 gagcggtacctcatcgggcgcatcggacccaggcagtaccggatgtaccggtgcattgtg 2035 Query: 62 agatatggttataaggatgtgcagaaagacgacgagaacttcgagaaccacctggttatg 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2036 agatatggttataaggatgtgcagaaagacgacgagaacttcgagaaccacctggttatg 2095 Query: 122 agcattgccaagttcatccaaatggaagcggaggaagccgcctcttctagaagctatgag 181 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 2096 agcattgccaagttcatccaaatggaagcggaggaagccgcctcttctggaagctatgag 2155 Query: 182 tcatcgaatgaaggaagaatggcggtcatacacaccactgacgcaactggaaccgggctg 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2156 tcatcgaatgaaggaagaatggcggtcatacacaccactgacgcaactggaaccgggctg 2215 Query: 242 gtcatgagagactccaacgaaggcacctccctgaccaggagcagcaagtcggagaccctc 301 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 2216 gtcatgagagactccaacgaaggcacctccctgaccaggagcagcaagtcggggaccctc 2275 Query: 302 cagagcctgcagtccatctacgagcaggagtcgggcagcctgagccgccgaagggtccgt 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2276 cagagcctgcagtccatctacgagcaggagtcgggcagcctgagccgccgaagggtccgt 2335 Query: 362 ttccagatcgccgaggaggagcaggtcaacccgcaggtgcgtgacgagctgtcggacctc 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2336 ttccagatcgccgaggaggagcaggtcaacccgcaggtgcgtgacgagctgtcggacctc 2395 Query: 422 ttggaggcgaaggaggcccggcgtggcgtacatcattggccactcctacgtgaaggcgag 481 |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 2396 ttggaggcgaaggagg-ccggcgtggcgtacatcatcggccactcctacgtgaaggcgag 2454 Query: 482 gaagaactccaacttcttgaagtcgttcgccatcgactacgcctactcgttccttcgcaa 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2455 gaagaactccaacttcttgaagtcgttcgccatcgactacgcctactcgttccttcgcaa 2514 Query: 542 gaactgcaggggcccatcggtgacgctgcacataccccacatcagcctc 590 ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2515 gaactgcaggggcccgtcggtgacgctgcacataccccacatcagcctc 2563
>ref|XM_479449.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2346 Score = 406 bits (205), Expect = e-110 Identities = 502/598 (83%), Gaps = 16/598 (2%) Strand = Plus / Plus Query: 5 cggtacctcatcgggcgcatcggacccaggcagtaccggatgtaccggtgcattgtgaga 64 ||||||||||| || || ||||| |||||| | ||||| |||||||||||||| ||||| Sbjct: 1723 cggtacctcattggacggatcggccccagggaataccgtatgtaccggtgcatcgtgagg 1782 Query: 65 tatggttataaggatgtgcagaaagacgacgagaacttcgagaaccacctggttatgagc 124 ||||| || || |||||||||||||| ||||||||||| ||||||||| |||| |||||| Sbjct: 1783 tatggctacaaagatgtgcagaaagatgacgagaactttgagaaccacttggtgatgagc 1842 Query: 125 attgccaagttcatccaaatggaagcggaggaagccgcctcttctagaagctatgagtca 184 |||||||||||||||||||||||||| ||||| || ||||| ||| | ||||| || || Sbjct: 1843 attgccaagttcatccaaatggaagccgaggaggcagcctcctctgggagctacgaatct 1902 Query: 185 tcgaatgaaggaagaatggcggtcatacacaccactgacgcaactggaaccgggctggtc 244 ||| ||||| || ||||| ||||||||||| ||| |||| || ||||| ||||| Sbjct: 1903 tcg---gaagggaggatggctgtcatacacacagaggacacaaccggcaccggtctggtg 1959 Query: 245 atgagagactccaa---cga------aggcacctccctgaccaggagcagcaagtcggag 295 ||||| |||||||| ||| |||||| |||||||| |||||||||| ||||||| Sbjct: 1960 atgagggactccaataacgaggcttcaggcacgtccctgacaaggagcagcaggtcggag 2019 Query: 296 accctccagagcctgcagtccatctacgagcaggagtcgggcagcctgagccgccga--- 352 || |||| |||||| ||||||||||||||||||||||| || || || ||||| || Sbjct: 2020 acgctccggagcctccagtccatctacgagcaggagtccggtagtctcagccggcgtcgc 2079 Query: 353 agggtccgtttccagatcgccgaggaggagcaggtcaacccgcaggtgcgtgacgagctg 412 || |||||||| |||| || |||||||||| | || |||| |||||||| ||||||||| Sbjct: 2080 agagtccgttttgagattgcggaggaggagcggatcgacccccaggtgcgggacgagctg 2139 Query: 413 tcggacctcttggaggcgaaggaggcccggcgtggcgtacatcattggccactcctacgt 472 | || ||| |||| || ||||||||| |||||| | |||||||| |||||||||||||| Sbjct: 2140 gctgatctcctggacgccaaggaggcc-ggcgtgacttacatcatcggccactcctacgt 2198 Query: 473 gaaggcgaggaagaactccaacttcttgaagtcgttcgccatcgactacgcctactcgtt 532 |||||| |||||||||||||||||| | ||| ||||||||||||||||||| |||||||| Sbjct: 2199 gaaggcaaggaagaactccaacttcctcaagacgttcgccatcgactacgcttactcgtt 2258 Query: 533 ccttcgcaagaactgcaggggcccatcggtgacgctgcacataccccacatcagcctc 590 ||| ||||||||||||||||| || ||||| ||||||||||||||||||| |||||| Sbjct: 2259 cctccgcaagaactgcaggggtcccgcggtggcgctgcacataccccacattagcctc 2316
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 406 bits (205), Expect = e-110 Identities = 502/598 (83%), Gaps = 16/598 (2%) Strand = Plus / Minus Query: 5 cggtacctcatcgggcgcatcggacccaggcagtaccggatgtaccggtgcattgtgaga 64 ||||||||||| || || ||||| |||||| | ||||| |||||||||||||| ||||| Sbjct: 28259520 cggtacctcattggacggatcggccccagggaataccgtatgtaccggtgcatcgtgagg 28259461 Query: 65 tatggttataaggatgtgcagaaagacgacgagaacttcgagaaccacctggttatgagc 124 ||||| || || |||||||||||||| ||||||||||| ||||||||| |||| |||||| Sbjct: 28259460 tatggctacaaagatgtgcagaaagatgacgagaactttgagaaccacttggtgatgagc 28259401 Query: 125 attgccaagttcatccaaatggaagcggaggaagccgcctcttctagaagctatgagtca 184 |||||||||||||||||||||||||| ||||| || ||||| ||| | ||||| || || Sbjct: 28259400 attgccaagttcatccaaatggaagccgaggaggcagcctcctctgggagctacgaatct 28259341 Query: 185 tcgaatgaaggaagaatggcggtcatacacaccactgacgcaactggaaccgggctggtc 244 ||| ||||| || ||||| ||||||||||| ||| |||| || ||||| ||||| Sbjct: 28259340 tcg---gaagggaggatggctgtcatacacacagaggacacaaccggcaccggtctggtg 28259284 Query: 245 atgagagactccaa---cga------aggcacctccctgaccaggagcagcaagtcggag 295 ||||| |||||||| ||| |||||| |||||||| |||||||||| ||||||| Sbjct: 28259283 atgagggactccaataacgaggcttcaggcacgtccctgacaaggagcagcaggtcggag 28259224 Query: 296 accctccagagcctgcagtccatctacgagcaggagtcgggcagcctgagccgccga--- 352 || |||| |||||| ||||||||||||||||||||||| || || || ||||| || Sbjct: 28259223 acgctccggagcctccagtccatctacgagcaggagtccggtagtctcagccggcgtcgc 28259164 Query: 353 agggtccgtttccagatcgccgaggaggagcaggtcaacccgcaggtgcgtgacgagctg 412 || |||||||| |||| || |||||||||| | || |||| |||||||| ||||||||| Sbjct: 28259163 agagtccgttttgagattgcggaggaggagcggatcgacccccaggtgcgggacgagctg 28259104 Query: 413 tcggacctcttggaggcgaaggaggcccggcgtggcgtacatcattggccactcctacgt 472 | || ||| |||| || ||||||||| |||||| | |||||||| |||||||||||||| Sbjct: 28259103 gctgatctcctggacgccaaggaggcc-ggcgtgacttacatcatcggccactcctacgt 28259045 Query: 473 gaaggcgaggaagaactccaacttcttgaagtcgttcgccatcgactacgcctactcgtt 532 |||||| |||||||||||||||||| | ||| ||||||||||||||||||| |||||||| Sbjct: 28259044 gaaggcaaggaagaactccaacttcctcaagacgttcgccatcgactacgcttactcgtt 28258985 Query: 533 ccttcgcaagaactgcaggggcccatcggtgacgctgcacataccccacatcagcctc 590 ||| ||||||||||||||||| || ||||| ||||||||||||||||||| |||||| Sbjct: 28258984 cctccgcaagaactgcaggggtcccgcggtggcgctgcacataccccacattagcctc 28258927
>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0625E02 Length = 153921 Score = 406 bits (205), Expect = e-110 Identities = 502/598 (83%), Gaps = 16/598 (2%) Strand = Plus / Minus Query: 5 cggtacctcatcgggcgcatcggacccaggcagtaccggatgtaccggtgcattgtgaga 64 ||||||||||| || || ||||| |||||| | ||||| |||||||||||||| ||||| Sbjct: 115065 cggtacctcattggacggatcggccccagggaataccgtatgtaccggtgcatcgtgagg 115006 Query: 65 tatggttataaggatgtgcagaaagacgacgagaacttcgagaaccacctggttatgagc 124 ||||| || || |||||||||||||| ||||||||||| ||||||||| |||| |||||| Sbjct: 115005 tatggctacaaagatgtgcagaaagatgacgagaactttgagaaccacttggtgatgagc 114946 Query: 125 attgccaagttcatccaaatggaagcggaggaagccgcctcttctagaagctatgagtca 184 |||||||||||||||||||||||||| ||||| || ||||| ||| | ||||| || || Sbjct: 114945 attgccaagttcatccaaatggaagccgaggaggcagcctcctctgggagctacgaatct 114886 Query: 185 tcgaatgaaggaagaatggcggtcatacacaccactgacgcaactggaaccgggctggtc 244 ||| ||||| || ||||| ||||||||||| ||| |||| || ||||| ||||| Sbjct: 114885 tcg---gaagggaggatggctgtcatacacacagaggacacaaccggcaccggtctggtg 114829 Query: 245 atgagagactccaa---cga------aggcacctccctgaccaggagcagcaagtcggag 295 ||||| |||||||| ||| |||||| |||||||| |||||||||| ||||||| Sbjct: 114828 atgagggactccaataacgaggcttcaggcacgtccctgacaaggagcagcaggtcggag 114769 Query: 296 accctccagagcctgcagtccatctacgagcaggagtcgggcagcctgagccgccga--- 352 || |||| |||||| ||||||||||||||||||||||| || || || ||||| || Sbjct: 114768 acgctccggagcctccagtccatctacgagcaggagtccggtagtctcagccggcgtcgc 114709 Query: 353 agggtccgtttccagatcgccgaggaggagcaggtcaacccgcaggtgcgtgacgagctg 412 || |||||||| |||| || |||||||||| | || |||| |||||||| ||||||||| Sbjct: 114708 agagtccgttttgagattgcggaggaggagcggatcgacccccaggtgcgggacgagctg 114649 Query: 413 tcggacctcttggaggcgaaggaggcccggcgtggcgtacatcattggccactcctacgt 472 | || ||| |||| || ||||||||| |||||| | |||||||| |||||||||||||| Sbjct: 114648 gctgatctcctggacgccaaggaggcc-ggcgtgacttacatcatcggccactcctacgt 114590 Query: 473 gaaggcgaggaagaactccaacttcttgaagtcgttcgccatcgactacgcctactcgtt 532 |||||| |||||||||||||||||| | ||| ||||||||||||||||||| |||||||| Sbjct: 114589 gaaggcaaggaagaactccaacttcctcaagacgttcgccatcgactacgcttactcgtt 114530 Query: 533 ccttcgcaagaactgcaggggcccatcggtgacgctgcacataccccacatcagcctc 590 ||| ||||||||||||||||| || ||||| ||||||||||||||||||| |||||| Sbjct: 114529 cctccgcaagaactgcaggggtcccgcggtggcgctgcacataccccacattagcctc 114472
>emb|AJ427976.1|OSA427976 Oryza sativa HAK7 gene for putative potasium transporter, exons 1-8 Length = 5189 Score = 406 bits (205), Expect = e-110 Identities = 502/598 (83%), Gaps = 16/598 (2%) Strand = Plus / Plus Query: 5 cggtacctcatcgggcgcatcggacccaggcagtaccggatgtaccggtgcattgtgaga 64 ||||||||||| || || ||||| |||||| | ||||| |||||||||||||| ||||| Sbjct: 4070 cggtacctcattggacggatcggccccagggaataccgtatgtaccggtgcatcgtgagg 4129 Query: 65 tatggttataaggatgtgcagaaagacgacgagaacttcgagaaccacctggttatgagc 124 ||||| || || |||||||||||||| ||||||||||| ||||||||| |||| |||||| Sbjct: 4130 tatggctacaaagatgtgcagaaagatgacgagaactttgagaaccacttggtgatgagc 4189 Query: 125 attgccaagttcatccaaatggaagcggaggaagccgcctcttctagaagctatgagtca 184 |||||||||||||||||||||||||| ||||| || ||||| ||| | ||||| || || Sbjct: 4190 attgccaagttcatccaaatggaagccgaggaggcagcctcctctgggagctacgaatct 4249 Query: 185 tcgaatgaaggaagaatggcggtcatacacaccactgacgcaactggaaccgggctggtc 244 ||| ||||| || ||||| ||||||||||| ||| |||| || ||||| ||||| Sbjct: 4250 tcg---gaagggaggatggctgtcatacacacagaggacacaaccggcaccggtctggtg 4306 Query: 245 atgagagactccaa---cga------aggcacctccctgaccaggagcagcaagtcggag 295 ||||| |||||||| ||| |||||| |||||||| |||||||||| ||||||| Sbjct: 4307 atgagggactccaataacgaggcttcaggcacgtccctgacaaggagcagcaggtcggag 4366 Query: 296 accctccagagcctgcagtccatctacgagcaggagtcgggcagcctgagccgccga--- 352 || |||| |||||| ||||||||||||||||||||||| || || || ||||| || Sbjct: 4367 acgctccggagcctccagtccatctacgagcaggagtccggtagtctcagccggcgtcgc 4426 Query: 353 agggtccgtttccagatcgccgaggaggagcaggtcaacccgcaggtgcgtgacgagctg 412 || |||||||| |||| || |||||||||| | || |||| |||||||| ||||||||| Sbjct: 4427 agagtccgttttgagattgcggaggaggagcggatcgacccccaggtgcgggacgagctg 4486 Query: 413 tcggacctcttggaggcgaaggaggcccggcgtggcgtacatcattggccactcctacgt 472 | || ||| |||| || ||||||||| |||||| | |||||||| |||||||||||||| Sbjct: 4487 gctgatctcctggacgccaaggaggcc-ggcgtgacttacatcatcggccactcctacgt 4545 Query: 473 gaaggcgaggaagaactccaacttcttgaagtcgttcgccatcgactacgcctactcgtt 532 |||||| |||||||||||||||||| | ||| ||||||||||||||||||| |||||||| Sbjct: 4546 gaaggcaaggaagaactccaacttcctcaagacgttcgccatcgactacgcttactcgtt 4605 Query: 533 ccttcgcaagaactgcaggggcccatcggtgacgctgcacataccccacatcagcctc 590 ||| ||||||||||||||||| || ||||| ||||||||||||||||||| |||||| Sbjct: 4606 cctccgcaagaactgcaggggtcccgcggtggcgctgcacataccccacattagcctc 4663
>emb|AJ427971.1|OSA427971 Oryza sativa mRNA for putative potasium transporter (HAK7 gene) Length = 2436 Score = 406 bits (205), Expect = e-110 Identities = 502/598 (83%), Gaps = 16/598 (2%) Strand = Plus / Plus Query: 5 cggtacctcatcgggcgcatcggacccaggcagtaccggatgtaccggtgcattgtgaga 64 ||||||||||| || || ||||| |||||| | ||||| |||||||||||||| ||||| Sbjct: 1813 cggtacctcattggacggatcggccccagggaataccgtatgtaccggtgcatcgtgagg 1872 Query: 65 tatggttataaggatgtgcagaaagacgacgagaacttcgagaaccacctggttatgagc 124 ||||| || || |||||||||||||| ||||||||||| ||||||||| |||| |||||| Sbjct: 1873 tatggctacaaagatgtgcagaaagatgacgagaactttgagaaccacttggtgatgagc 1932 Query: 125 attgccaagttcatccaaatggaagcggaggaagccgcctcttctagaagctatgagtca 184 |||||||||||||||||||||||||| ||||| || ||||| ||| | ||||| || || Sbjct: 1933 attgccaagttcatccaaatggaagccgaggaggcagcctcctctgggagctacgaatct 1992 Query: 185 tcgaatgaaggaagaatggcggtcatacacaccactgacgcaactggaaccgggctggtc 244 ||| ||||| || ||||| ||||||||||| ||| |||| || ||||| ||||| Sbjct: 1993 tcg---gaagggaggatggctgtcatacacacagaggacacaaccggcaccggtctggtg 2049 Query: 245 atgagagactccaa---cga------aggcacctccctgaccaggagcagcaagtcggag 295 ||||| |||||||| ||| |||||| |||||||| |||||||||| ||||||| Sbjct: 2050 atgagggactccaataacgaggcttcaggcacgtccctgacaaggagcagcaggtcggag 2109 Query: 296 accctccagagcctgcagtccatctacgagcaggagtcgggcagcctgagccgccga--- 352 || |||| |||||| ||||||||||||||||||||||| || || || ||||| || Sbjct: 2110 acgctccggagcctccagtccatctacgagcaggagtccggtagtctcagccggcgtcgc 2169 Query: 353 agggtccgtttccagatcgccgaggaggagcaggtcaacccgcaggtgcgtgacgagctg 412 || |||||||| |||| || |||||||||| | || |||| |||||||| ||||||||| Sbjct: 2170 agagtccgttttgagattgcggaggaggagcggatcgacccccaggtgcgggacgagctg 2229 Query: 413 tcggacctcttggaggcgaaggaggcccggcgtggcgtacatcattggccactcctacgt 472 | || ||| |||| || ||||||||| |||||| | |||||||| |||||||||||||| Sbjct: 2230 gctgatctcctggacgccaaggaggcc-ggcgtgacttacatcatcggccactcctacgt 2288 Query: 473 gaaggcgaggaagaactccaacttcttgaagtcgttcgccatcgactacgcctactcgtt 532 |||||| |||||||||||||||||| | ||| ||||||||||||||||||| |||||||| Sbjct: 2289 gaaggcaaggaagaactccaacttcctcaagacgttcgccatcgactacgcttactcgtt 2348 Query: 533 ccttcgcaagaactgcaggggcccatcggtgacgctgcacataccccacatcagcctc 590 ||| ||||||||||||||||| || ||||| ||||||||||||||||||| |||||| Sbjct: 2349 cctccgcaagaactgcaggggtcccgcggtggcgctgcacataccccacattagcctc 2406
>dbj|AK059797.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-E12, full insert sequence Length = 1057 Score = 406 bits (205), Expect = e-110 Identities = 502/598 (83%), Gaps = 16/598 (2%) Strand = Plus / Plus Query: 5 cggtacctcatcgggcgcatcggacccaggcagtaccggatgtaccggtgcattgtgaga 64 ||||||||||| || || ||||| |||||| | ||||| |||||||||||||| ||||| Sbjct: 191 cggtacctcattggacggatcggccccagggaataccgtatgtaccggtgcatcgtgagg 250 Query: 65 tatggttataaggatgtgcagaaagacgacgagaacttcgagaaccacctggttatgagc 124 ||||| || || |||||||||||||| ||||||||||| ||||||||| |||| |||||| Sbjct: 251 tatggctacaaagatgtgcagaaagatgacgagaactttgagaaccacttggtgatgagc 310 Query: 125 attgccaagttcatccaaatggaagcggaggaagccgcctcttctagaagctatgagtca 184 |||||||||||||||||||||||||| ||||| || ||||| ||| | ||||| || || Sbjct: 311 attgccaagttcatccaaatggaagccgaggaggcagcctcctctgggagctacgaatct 370 Query: 185 tcgaatgaaggaagaatggcggtcatacacaccactgacgcaactggaaccgggctggtc 244 ||| ||||| || ||||| ||||||||||| ||| |||| || ||||| ||||| Sbjct: 371 tcg---gaagggaggatggctgtcatacacacagaggacacaaccggcaccggtctggtg 427 Query: 245 atgagagactccaa---cga------aggcacctccctgaccaggagcagcaagtcggag 295 ||||| |||||||| ||| |||||| |||||||| |||||||||| ||||||| Sbjct: 428 atgagggactccaataacgaggcttcaggcacgtccctgacaaggagcagcaggtcggag 487 Query: 296 accctccagagcctgcagtccatctacgagcaggagtcgggcagcctgagccgccga--- 352 || |||| |||||| ||||||||||||||||||||||| || || || ||||| || Sbjct: 488 acgctccggagcctccagtccatctacgagcaggagtccggtagtctcagccggcgtcgc 547 Query: 353 agggtccgtttccagatcgccgaggaggagcaggtcaacccgcaggtgcgtgacgagctg 412 || |||||||| |||| || |||||||||| | || |||| |||||||| ||||||||| Sbjct: 548 agagtccgttttgagattgcggaggaggagcggatcgacccccaggtgcgggacgagctg 607 Query: 413 tcggacctcttggaggcgaaggaggcccggcgtggcgtacatcattggccactcctacgt 472 | || ||| |||| || ||||||||| |||||| | |||||||| |||||||||||||| Sbjct: 608 gctgatctcctggacgccaaggaggcc-ggcgtgacttacatcatcggccactcctacgt 666 Query: 473 gaaggcgaggaagaactccaacttcttgaagtcgttcgccatcgactacgcctactcgtt 532 |||||| |||||||||||||||||| | ||| ||||||||||||||||||| |||||||| Sbjct: 667 gaaggcaaggaagaactccaacttcctcaagacgttcgccatcgactacgcttactcgtt 726 Query: 533 ccttcgcaagaactgcaggggcccatcggtgacgctgcacataccccacatcagcctc 590 ||| ||||||||||||||||| || ||||| ||||||||||||||||||| |||||| Sbjct: 727 cctccgcaagaactgcaggggtcccgcggtggcgctgcacataccccacattagcctc 784
>dbj|AB256660.1| Phragmites australis PhaHAK3 mRNA for potassium transporter, complete cds, strain: Nanpi Length = 2423 Score = 404 bits (204), Expect = e-109 Identities = 299/328 (91%), Gaps = 7/328 (2%) Strand = Plus / Plus Query: 269 tccctgaccaggagcagcaagtcggagaccctccagagcctgcagtccatctacgagcag 328 ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct: 2014 tccctgacccggagcagcaagtcggagacgctccggagcctgcagtccatctacgagcag 2073 Query: 329 gagtcggg---cagcctgagccgccga---agggtccgtttccagatcgccgaggaggag 382 |||||||| | ||||||||||||| ||||| || ||||||||| ||||||||||| Sbjct: 2074 gagtcggggggcggcctgagccgccggcggagggtgcggttccagatctccgaggaggag 2133 Query: 383 caggtcaacccgcaggtgcgtgacgagctgtcggacctcttggaggcgaaggaggcccgg 442 | || | ||||||||||||| ||||||||||| |||||| ||||||||||||||||| || Sbjct: 2134 cgggccgacccgcaggtgcgggacgagctgtccgacctcctggaggcgaaggaggcc-gg 2192 Query: 443 cgtggcgtacatcattggccactcctacgtgaaggcgaggaagaactccaacttcttgaa 502 ||||||||||||||| |||||||| |||||||||||||||||||||||||||||| | || Sbjct: 2193 cgtggcgtacatcatcggccactcgtacgtgaaggcgaggaagaactccaacttcctcaa 2252 Query: 503 gtcgttcgccatcgactacgcctactcgttccttcgcaagaactgcaggggcccatcggt 562 | ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 2253 gacgttcgccatcgactacgcctactcgttcctccgcaagaactgcaggggcccgtcggt 2312 Query: 563 gacgctgcacataccccacatcagcctc 590 |||||||||||| ||||||||||||||| Sbjct: 2313 gacgctgcacatcccccacatcagcctc 2340 Score = 163 bits (82), Expect = 8e-37 Identities = 184/218 (84%) Strand = Plus / Plus Query: 2 gagcggtacctcatcgggcgcatcggacccaggcagtaccggatgtaccggtgcattgtg 61 ||||||||||||||||| | ||||| |||||| ||||||| |||||||| ||||| || Sbjct: 1735 gagcggtacctcatcggcaggatcggccccagggagtaccgcatgtaccgctgcatcgtc 1794 Query: 62 agatatggttataaggatgtgcagaaagacgacgagaacttcgagaaccacctggttatg 121 || || || || ||||| |||||||| |||||||||||||||||||||||||| || ||| Sbjct: 1795 aggtacgggtacaaggacgtgcagaaggacgacgagaacttcgagaaccacctcgtgatg 1854 Query: 122 agcattgccaagttcatccaaatggaagcggaggaagccgcctcttctagaagctatgag 181 ||||| |||||||||||||| ||||| || ||||| |||||||| || | ||||| ||| Sbjct: 1855 agcatagccaagttcatccagatggaggccgaggaggccgcctcgtcggggagctacgag 1914 Query: 182 tcatcgaatgaaggaagaatggcggtcatacacaccac 219 || |||| ||||| || ||||||||| | |||||||| Sbjct: 1915 tcgtcgacggaagggaggatggcggtcgtgcacaccac 1952
>dbj|AB256661.1| Phragmites australis PhaHAK3 mRNA for potassium transporter, complete cds, strain: Enchi Length = 2251 Score = 396 bits (200), Expect = e-107 Identities = 298/328 (90%), Gaps = 7/328 (2%) Strand = Plus / Plus Query: 269 tccctgaccaggagcagcaagtcggagaccctccagagcctgcagtccatctacgagcag 328 ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct: 1842 tccctgacccggagcagcaagtcggagacgctccggagcctgcagtccatctacgagcag 1901 Query: 329 gagtcggg---cagcctgagccgccga---agggtccgtttccagatcgccgaggaggag 382 |||||||| | ||||||||||||| ||||| || ||||||||| ||||||||||| Sbjct: 1902 gagtcggggggcggcctgagccgccggcggagggtgcggttccagatctccgaggaggag 1961 Query: 383 caggtcaacccgcaggtgcgtgacgagctgtcggacctcttggaggcgaaggaggcccgg 442 | || | ||||||||||||| ||||||||||| |||||| ||||||||||||||||| || Sbjct: 1962 cgggccgacccgcaggtgcgggacgagctgtccgacctcctggaggcgaaggaggcc-gg 2020 Query: 443 cgtggcgtacatcattggccactcctacgtgaaggcgaggaagaactccaacttcttgaa 502 ||||||||||||||| |||||||| |||||||||||||||||||||||||||||| | || Sbjct: 2021 cgtggcgtacatcatcggccactcgtacgtgaaggcgaggaagaactccaacttcctcaa 2080 Query: 503 gtcgttcgccatcgactacgcctactcgttccttcgcaagaactgcaggggcccatcggt 562 | ||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct: 2081 gacgttcgccatcgactacgcctactcgttcctccgcaagaactgcagaggcccgtcggt 2140 Query: 563 gacgctgcacataccccacatcagcctc 590 |||||||||||| ||||||||||||||| Sbjct: 2141 gacgctgcacatcccccacatcagcctc 2168 Score = 151 bits (76), Expect = 3e-33 Identities = 199/240 (82%) Strand = Plus / Plus Query: 2 gagcggtacctcatcgggcgcatcggacccaggcagtaccggatgtaccggtgcattgtg 61 ||||||||||||||||| | ||||| |||||| ||||||| |||||||| ||||| || Sbjct: 1563 gagcggtacctcatcggcaggatcggccccagggagtaccgcatgtaccgctgcatcgtc 1622 Query: 62 agatatggttataaggatgtgcagaaagacgacgagaacttcgagaaccacctggttatg 121 || || || || ||||| |||||||| |||||||||||||| |||||||| || || ||| Sbjct: 1623 aggtacgggtacaaggacgtgcagaaggacgacgagaactttgagaaccatctcgtgatg 1682 Query: 122 agcattgccaagttcatccaaatggaagcggaggaagccgcctcttctagaagctatgag 181 ||||| |||||||||||||| ||||| || ||||| |||||||| || | ||||| ||| Sbjct: 1683 agcatcgccaagttcatccagatggaggccgaggaggccgcctcgtcggggagctacgag 1742 Query: 182 tcatcgaatgaaggaagaatggcggtcatacacaccactgacgcaactggaaccgggctg 241 || |||| ||||| || ||||||||| | |||||||| ||| | || || ||||||||| Sbjct: 1743 tcgtcgacggaagggaggatggcggtcgtgcacaccacggacacgacgggcaccgggctg 1802
>dbj|AB256659.1| Phragmites australis PhaHAK3 mRNA for potassium transporter, complete cds, strain: Utsunomiya Length = 2431 Score = 381 bits (192), Expect = e-102 Identities = 296/328 (90%), Gaps = 7/328 (2%) Strand = Plus / Plus Query: 269 tccctgaccaggagcagcaagtcggagaccctccagagcctgcagtccatctacgagcag 328 ||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct: 2020 tccctgacccggagcagcaagtcggagacgctctggagcctgcagtccatctacgagcag 2079 Query: 329 gagtcggg---cagcctgagccgccga---agggtccgtttccagatcgccgaggaggag 382 |||||||| | ||||||||||||| ||||| | ||||||||| ||||||||||| Sbjct: 2080 gagtcggggggcggcctgagccgccggcggagggtgcagttccagatctccgaggaggag 2139 Query: 383 caggtcaacccgcaggtgcgtgacgagctgtcggacctcttggaggcgaaggaggcccgg 442 | || | ||||||||||||| ||||||||||| || ||| ||||||||||||||||| || Sbjct: 2140 cgggccgacccgcaggtgcgggacgagctgtccgatctcctggaggcgaaggaggcc-gg 2198 Query: 443 cgtggcgtacatcattggccactcctacgtgaaggcgaggaagaactccaacttcttgaa 502 ||||||||||||||| |||||||| |||||||||||||||||||||||||||||| | || Sbjct: 2199 cgtggcgtacatcatcggccactcgtacgtgaaggcgaggaagaactccaacttcctcaa 2258 Query: 503 gtcgttcgccatcgactacgcctactcgttccttcgcaagaactgcaggggcccatcggt 562 | ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 2259 gacgttcgccatcgactacgcctactcgttcctccgcaagaactgcaggggcccgtcggt 2318 Query: 563 gacgctgcacataccccacatcagcctc 590 |||||||||||| ||||||||||||||| Sbjct: 2319 gacgctgcacatcccccacatcagcctc 2346 Score = 163 bits (82), Expect = 8e-37 Identities = 202/242 (83%) Strand = Plus / Plus Query: 2 gagcggtacctcatcgggcgcatcggacccaggcagtaccggatgtaccggtgcattgtg 61 ||||||||||||||||| | ||||| |||||| ||||||| |||||||| ||||| || Sbjct: 1741 gagcggtacctcatcggcaggatcggccccagggagtaccgcatgtaccgctgcatcgtc 1800 Query: 62 agatatggttataaggatgtgcagaaagacgacgagaacttcgagaaccacctggttatg 121 || || || || ||||| |||||||| |||||||||||||| ||||||||||| || ||| Sbjct: 1801 aggtacgggtacaaggacgtgcagaaggacgacgagaactttgagaaccacctcgtgatg 1860 Query: 122 agcattgccaagttcatccaaatggaagcggaggaagccgcctcttctagaagctatgag 181 ||||| |||||||||||||| ||||| || ||||| |||||||| || | ||||| ||| Sbjct: 1861 agcatagccaagttcatccagatggaggccgaggaggccgcctcgtcggggagctacgag 1920 Query: 182 tcatcgaatgaaggaagaatggcggtcatacacaccactgacgcaactggaaccgggctg 241 || |||| ||||| || ||||||||| | |||||||| ||| | || || ||||||||| Sbjct: 1921 tcgtcgacggaagggaggatggcggtcgtgcacaccacagacacgacgggcaccgggctg 1980 Query: 242 gt 243 || Sbjct: 1981 gt 1982
>emb|AJ427293.1|CNO427293 Cymodocea nodosa mRNA for putative potassium transporter (hak2 gene) Length = 2613 Score = 58.0 bits (29), Expect = 3e-05 Identities = 95/117 (81%) Strand = Plus / Plus Query: 43 gatgtaccggtgcattgtgagatatggttataaggatgtgcagaaagacgacgagaactt 102 ||||||| |||||||| | |||||||| || ||||| || |||| ||||| || |||| Sbjct: 1817 gatgtacaggtgcattattagatatggatacaaggacgtaaagaaggacgatgatgactt 1876 Query: 103 cgagaaccacctggttatgagcattgccaagttcatccaaatggaagcggaggaagc 159 || || || ||||| ||||||||||| ||||||| || |||||||| |||||||| Sbjct: 1877 tgaaaatcagctggtgatgagcattgcagagttcattcagatggaagccgaggaagc 1933 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 277 caggagcagcaagtcggagaccctccagagcctgcagtccatctacgagcaggagtc 333 |||||||||||||||||| || | |||||| ||||||| | |||||||||||||| Sbjct: 2066 caggagcagcaagtcggaaacattgcagagcttgcagtcgctgtacgagcaggagtc 2122
>gb|AY104525.1| Zea mays PCO106353 mRNA sequence Length = 1115 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 41 cggatgtaccggtgcattgtgagatatggttataaggatgtgcag 85 ||||||||||| ||||| || ||||||||||| || ||||||||| Sbjct: 255 cggatgtaccgttgcatcgttagatatggttacaaagatgtgcag 299 Score = 48.1 bits (24), Expect = 0.033 Identities = 51/60 (85%) Strand = Plus / Plus Query: 524 ctactcgttccttcgcaagaactgcaggggcccatcggtgacgctgcacataccccacat 583 |||||| ||||| || ||||||||||| || ||||| || ||||||||||| || ||||| Sbjct: 746 ctactctttcctccggaagaactgcagaggtccatcagttacgctgcacattccacacat 805 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 aatgaaggaagaatggcggtcata 211 ||||||||||| |||||||||||| Sbjct: 402 aatgaaggaaggatggcggtcata 425
>ref|NM_193825.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2421 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Plus Query: 439 ccggcgtggcgtacatcattggccactcctacgtgaaggcgaggaaga 486 ||||||| || |||||||| |||||||| ||| | ||||||||||||| Sbjct: 2240 ccggcgtcgcctacatcatgggccactcgtacatcaaggcgaggaaga 2287
>dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0560B06 Length = 161720 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 439 ccggcgtggcgtacatcattggccactcctacgtgaaggcgaggaaga 486 ||||||| || |||||||| |||||||| ||| | ||||||||||||| Sbjct: 150727 ccggcgtcgcctacatcatgggccactcgtacatcaaggcgaggaaga 150680
>gb|AC011806.1|AC011806 Genomic Sequence For Oryza sativa Clone 10P20, Lemont Strain, Complete Sequence, complete sequence Length = 105198 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 439 ccggcgtggcgtacatcattggccactcctacgtgaaggcgaggaaga 486 ||||||| || |||||||| |||||||| ||| | ||||||||||||| Sbjct: 88337 ccggcgtcgcctacatcatgggccactcgtacatcaaggcgaggaaga 88290
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 439 ccggcgtggcgtacatcattggccactcctacgtgaaggcgaggaaga 486 ||||||| || |||||||| |||||||| ||| | ||||||||||||| Sbjct: 15134675 ccggcgtcgcctacatcatgggccactcgtacatcaaggcgaggaaga 15134628 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Plus Query: 524 ctactcgttccttcgcaagaactgcaggggcccatcggtgacgctgcacat 574 |||||| ||||| || ||||||||||| || |||||||| || |||||||| Sbjct: 41058522 ctactctttcctccggaagaactgcagaggtccatcggtcacactgcacat 41058572 Score = 44.1 bits (22), Expect = 0.51 Identities = 40/46 (86%) Strand = Plus / Plus Query: 41 cggatgtaccggtgcattgtgagatatggttataaggatgtgcaga 86 ||||||||||| |||||||| || |||||||| || ||||| |||| Sbjct: 41058031 cggatgtaccgctgcattgttaggtatggttacaaagatgttcaga 41058076
>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0043B10 Length = 167399 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 439 ccggcgtggcgtacatcattggccactcctacgtgaaggcgaggaaga 486 ||||||| || |||||||| |||||||| ||| | ||||||||||||| Sbjct: 106641 ccggcgtcgcctacatcatgggccactcgtacatcaaggcgaggaaga 106594
>emb|AJ427974.1|OSA427974 Oryza sativa HAK3 gene for putative potasium transporter, exons 1-6 Length = 3777 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Plus Query: 439 ccggcgtggcgtacatcattggccactcctacgtgaaggcgaggaaga 486 ||||||| || |||||||| |||||||| ||| | ||||||||||||| Sbjct: 3100 ccggcgtcgcctacatcatgggccactcgtacatcaaggcgaggaaga 3147
>dbj|AK100340.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081N10, full insert sequence Length = 2159 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Plus Query: 439 ccggcgtggcgtacatcattggccactcctacgtgaaggcgaggaaga 486 ||||||| || |||||||| |||||||| ||| | ||||||||||||| Sbjct: 1765 ccggcgtcgcctacatcatgggccactcgtacatcaaggcgaggaaga 1812
>ref|NM_190057.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2352 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Plus Query: 524 ctactcgttccttcgcaagaactgcaggggcccatcggtgacgctgcacat 574 |||||| ||||| || ||||||||||| || |||||||| || |||||||| Sbjct: 2256 ctactctttcctccggaagaactgcagaggtccatcggtcacactgcacat 2306 Score = 44.1 bits (22), Expect = 0.51 Identities = 40/46 (86%) Strand = Plus / Plus Query: 41 cggatgtaccggtgcattgtgagatatggttataaggatgtgcaga 86 ||||||||||| |||||||| || |||||||| || ||||| |||| Sbjct: 1765 cggatgtaccgctgcattgttaggtatggttacaaagatgttcaga 1810
>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492G09 Length = 142239 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Plus Query: 524 ctactcgttccttcgcaagaactgcaggggcccatcggtgacgctgcacat 574 |||||| ||||| || ||||||||||| || |||||||| || |||||||| Sbjct: 95452 ctactctttcctccggaagaactgcagaggtccatcggtcacactgcacat 95502 Score = 44.1 bits (22), Expect = 0.51 Identities = 40/46 (86%) Strand = Plus / Plus Query: 41 cggatgtaccggtgcattgtgagatatggttataaggatgtgcaga 86 ||||||||||| |||||||| || |||||||| || ||||| |||| Sbjct: 94961 cggatgtaccgctgcattgttaggtatggttacaaagatgttcaga 95006
>dbj|AK071411.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091C23, full insert sequence Length = 2663 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Plus Query: 524 ctactcgttccttcgcaagaactgcaggggcccatcggtgacgctgcacat 574 |||||| ||||| || ||||||||||| || |||||||| || |||||||| Sbjct: 2103 ctactctttcctccggaagaactgcagaggtccatcggtcacactgcacat 2153 Score = 44.1 bits (22), Expect = 0.51 Identities = 40/46 (86%) Strand = Plus / Plus Query: 41 cggatgtaccggtgcattgtgagatatggttataaggatgtgcaga 86 ||||||||||| |||||||| || |||||||| || ||||| |||| Sbjct: 1612 cggatgtaccgctgcattgttaggtatggttacaaagatgttcaga 1657
>dbj|AK070575.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055A03, full insert sequence Length = 2941 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Plus Query: 524 ctactcgttccttcgcaagaactgcaggggcccatcggtgacgctgcacat 574 |||||| ||||| || ||||||||||| || |||||||| || |||||||| Sbjct: 2355 ctactctttcctccggaagaactgcagaggtccatcggtcacactgcacat 2405 Score = 44.1 bits (22), Expect = 0.51 Identities = 40/46 (86%) Strand = Plus / Plus Query: 41 cggatgtaccggtgcattgtgagatatggttataaggatgtgcaga 86 ||||||||||| |||||||| || |||||||| || ||||| |||| Sbjct: 1864 cggatgtaccgctgcattgttaggtatggttacaaagatgttcaga 1909
>gb|AF083397.1|AF083397 Tribonema intermixtum 18S small subunit ribosomal RNA gene, partial sequence Length = 1830 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 326 caggagtcgggcagcctgagccg 348 ||||||||||||||||||||||| Sbjct: 697 caggagtcgggcagcctgagccg 675
>gb|U41648.1|BSU41648 Botrydium stoloniferum nuclear 18S ribosomal RNA gene Length = 1807 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 326 caggagtcgggcagcctgagccg 348 ||||||||||||||||||||||| Sbjct: 689 caggagtcgggcagcctgagccg 667
>gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, complete sequence Length = 152722 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 124 cattgccaagttcatccaaatggaag 149 |||||||||||||| ||||||||||| Sbjct: 9357 cattgccaagttcaaccaaatggaag 9332
>gb|AC009716.22| Homo sapiens chromosome 18, clone RP11-504I13, complete sequence Length = 211981 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 124 cattgccaagttcatccaaatggaag 149 |||||||||||||| ||||||||||| Sbjct: 206978 cattgccaagttcaaccaaatggaag 206953
>gb|AC092733.18| Homo sapiens chromosome 11, clone RP11-193F22, complete sequence Length = 195538 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 ccaggagcagcaagtcggaga 296 ||||||||||||||||||||| Sbjct: 174618 ccaggagcagcaagtcggaga 174598
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 297 ccctccagagcctgcagtccatctacgagcag 328 ||||||||||||||||| || |||| |||||| Sbjct: 1207680 ccctccagagcctgcagcccctctatgagcag 1207711
>gb|AC147079.4| Pan troglodytes BAC clone RP43-184E24 from 7, complete sequence Length = 218644 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 tccagagcctgcagtccatc 319 |||||||||||||||||||| Sbjct: 9877 tccagagcctgcagtccatc 9896
>gb|AC069286.7| Homo sapiens BAC clone RP11-261N10 from 7, complete sequence Length = 157118 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 tccagagcctgcagtccatc 319 |||||||||||||||||||| Sbjct: 143174 tccagagcctgcagtccatc 143193
>gb|AY223810.1| Rhodococcus erythropolis linear plasmid pBD2, complete sequence Length = 210205 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 atcgccgaggaggagcaggt 387 |||||||||||||||||||| Sbjct: 7845 atcgccgaggaggagcaggt 7826
>gb|AC113985.11| Mus musculus chromosome 6, clone RP24-103E20, complete sequence Length = 169187 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 ggaagccgcctcttctagaa 173 |||||||||||||||||||| Sbjct: 43907 ggaagccgcctcttctagaa 43888
>dbj|AK133929.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730529O17 product:homeo box A11, opposite strand transcript, full insert sequence Length = 1086 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 ggaagccgcctcttctagaa 173 |||||||||||||||||||| Sbjct: 483 ggaagccgcctcttctagaa 464
>gb|DQ360292.1| Mus musculus strain CAST/Ei C-X3-C chemokine receptor 1 (Cx3cr1), C-C motif chemokine receptor 8 (Ccr8), ribosomal protein SA (Rpsa), and myelin-associated oligodendrocytic basic protein (Mobp) genes, complete cds Length = 200011 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 gaggaggagcaggtcaaccc 393 |||||||||||||||||||| Sbjct: 152698 gaggaggagcaggtcaaccc 152717
>gb|DQ360291.1| Mus musculus strain SJL/J C-X3-C chemokine receptor 1 (Cx3cr1), C-C motif chemokine receptor 8 (Ccr8), ribosomal protein SA (Rpsa), and myelin-associated oligodendrocytic basic protein (Mobp) genes, complete cds Length = 144780 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 gaggaggagcaggtcaaccc 393 |||||||||||||||||||| Sbjct: 140540 gaggaggagcaggtcaaccc 140559
>ref|NM_001039364.1| Mus musculus myelin-associated oligodendrocytic basic protein (Mobp), transcript variant 2, mRNA Length = 2610 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 gaggaggagcaggtcaaccc 393 |||||||||||||||||||| Sbjct: 353 gaggaggagcaggtcaaccc 372
>ref|NM_008614.2| Mus musculus myelin-associated oligodendrocytic basic protein (Mobp), transcript variant 1, mRNA Length = 3286 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 gaggaggagcaggtcaaccc 393 |||||||||||||||||||| Sbjct: 352 gaggaggagcaggtcaaccc 371
>dbj|AK013799.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:2900076O11 product:myelin-associated oligodendrocytic basic protein, full insert sequence Length = 1477 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 gaggaggagcaggtcaaccc 393 |||||||||||||||||||| Sbjct: 353 gaggaggagcaggtcaaccc 372
>gb|U81317.1|MMU81317 Mus musculus myelin-associated/oligodendrocyte basic protein (Mobp) mRNA, complete cds Length = 410 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 gaggaggagcaggtcaaccc 393 |||||||||||||||||||| Sbjct: 272 gaggaggagcaggtcaaccc 291
>dbj|AK028057.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched library, clone:1500035N02 product:myelin-associated oligodendrocytic basic protein, full insert sequence Length = 3286 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 gaggaggagcaggtcaaccc 393 |||||||||||||||||||| Sbjct: 352 gaggaggagcaggtcaaccc 371
>dbj|AK083103.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:C630014L05 product:myelin-associated oligodendrocytic basic protein, full insert sequence Length = 2610 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 gaggaggagcaggtcaaccc 393 |||||||||||||||||||| Sbjct: 353 gaggaggagcaggtcaaccc 372
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 439 ccggcgtggcgtacatcattggccactcctacgtgaaggc 478 ||||| |||||| |||| | |||||||||||||| ||||| Sbjct: 24854868 ccggcatggcgttcatcctcggccactcctacgtcaaggc 24854829
>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0072A21 Length = 158287 Score = 40.1 bits (20), Expect = 8.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 439 ccggcgtggcgtacatcattggccactcctacgtgaaggc 478 ||||| |||||| |||| | |||||||||||||| ||||| Sbjct: 65951 ccggcatggcgttcatcctcggccactcctacgtcaaggc 65912
>gb|AF120476.1|AF120475S2 Mus musculus myelin-associated oligodendrocytic basic proteins MOBP73 and MOBP81 (Mobp) gene, exons 6 through 7c and complete cds, alternatively spliced Length = 4865 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 gaggaggagcaggtcaaccc 393 |||||||||||||||||||| Sbjct: 2041 gaggaggagcaggtcaaccc 2060
>emb|AJ427979.1|OSA427979 Oryza sativa HAK10 gene for putative potasium transporter, exons 1-9 Length = 5051 Score = 40.1 bits (20), Expect = 8.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 439 ccggcgtggcgtacatcattggccactcctacgtgaaggc 478 ||||| |||||| |||| | |||||||||||||| ||||| Sbjct: 4374 ccggcatggcgttcatcctcggccactcctacgtcaaggc 4413
>emb|AJ427972.1|OSA427972 Oryza sativa mRNA for putative potasium transporter (HAK10 gene) Length = 2532 Score = 40.1 bits (20), Expect = 8.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 439 ccggcgtggcgtacatcattggccactcctacgtgaaggc 478 ||||| |||||| |||| | |||||||||||||| ||||| Sbjct: 2351 ccggcatggcgttcatcctcggccactcctacgtcaaggc 2390
>dbj|AK107132.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-C06, full insert sequence Length = 1560 Score = 40.1 bits (20), Expect = 8.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 439 ccggcgtggcgtacatcattggccactcctacgtgaaggc 478 ||||| |||||| |||| | |||||||||||||| ||||| Sbjct: 1376 ccggcatggcgttcatcctcggccactcctacgtcaaggc 1415
>gb|AC110091.4| Mus musculus BAC clone RP24-87K15 from 9, complete sequence Length = 222792 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 gaggaggagcaggtcaaccc 393 |||||||||||||||||||| Sbjct: 108341 gaggaggagcaggtcaaccc 108360
>gb|AY919346.1| Phytolacca acinosa putative high-affinity potassium transporter protein mRNA, complete cds Length = 2337 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 agtaccggatgtaccggtgcattg 59 ||||||| |||||||||||||||| Sbjct: 1781 agtaccgtatgtaccggtgcattg 1804
>gb|AC015583.34| Mus musculus chromosome 6, clone RP23-329P9, complete sequence Length = 201379 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 ggaagccgcctcttctagaa 173 |||||||||||||||||||| Sbjct: 64174 ggaagccgcctcttctagaa 64193
>gb|U20371.1|MMU20371 Mus musculus homeobox protein (Hoxa11) gene, complete cds Length = 9038 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 ggaagccgcctcttctagaa 173 |||||||||||||||||||| Sbjct: 1235 ggaagccgcctcttctagaa 1254
>gb|U20369.1|MMU20369 Mus musculus Hoxa11 locus antisense-59 mRNA Length = 1074 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 ggaagccgcctcttctagaa 173 |||||||||||||||||||| Sbjct: 467 ggaagccgcctcttctagaa 448
>gb|U20368.1|MMU20368 Mus musculus Hoxa11 locus antisense-40 mRNA Length = 1108 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 ggaagccgcctcttctagaa 173 |||||||||||||||||||| Sbjct: 502 ggaagccgcctcttctagaa 483
>gb|U20367.1|MMU20367 Mus musculus Hoxa11 locus antisense-3C mRNA Length = 1434 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 ggaagccgcctcttctagaa 173 |||||||||||||||||||| Sbjct: 830 ggaagccgcctcttctagaa 811
>gb|U20366.1|MMU20366 Mus musculus Hoxa11 locus antisense-23A mRNA Length = 1839 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 ggaagccgcctcttctagaa 173 |||||||||||||||||||| Sbjct: 1262 ggaagccgcctcttctagaa 1243
>gb|AF440524.1| Pseudomonas aeruginosa strain SG17M genomic sequence, integrated gene island PAGI-3(SG) Length = 128136 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 ccggcgtggcgtacatcatt 458 |||||||||||||||||||| Sbjct: 18310 ccggcgtggcgtacatcatt 18329 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,662,249 Number of Sequences: 3902068 Number of extensions: 3662249 Number of successful extensions: 69001 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68800 Number of HSP's gapped (non-prelim): 185 length of query: 590 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 567 effective length of database: 17,143,297,704 effective search space: 9720249798168 effective search space used: 9720249798168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
