ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags11i15 |
|---|---|
| Clone Library Name | barley_pub |
>HD2A_MAIZE (O24591) Histone deacetylase 2a (HD2a) (Zm-HD2a) (Nucleolar histone| deacetylase HD2-p39) Length = 307 Score = 98.2 bits (243), Expect = 2e-20 Identities = 45/91 (49%), Positives = 62/91 (68%), Gaps = 1/91 (1%) Frame = +1 Query: 91 FWGVVVKPGETVKCDPGDSHY-HISTIALEAGKAEENVQVFVNTDDTRIMLGTLSVHNHP 267 FWG+ VKPG TVKC+PG H+S AL K +N ++V DD ++ +GTLSV +P Sbjct: 3 FWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKSDNALMYVKIDDQKLAIGTLSVDKNP 62 Query: 268 HVLADLVFKKEFELLHSSMTSNISFTGYKFD 360 H+ DL+F KEFEL H+S T+++ FTGYK + Sbjct: 63 HIQFDLIFDKEFELSHTSKTTSVFFTGYKVE 93
>HD2C_MAIZE (Q9M4U4) Histone deacetylase 2c (HD2c) (Zm-HD2c)| Length = 300 Score = 98.2 bits (243), Expect = 2e-20 Identities = 45/91 (49%), Positives = 62/91 (68%), Gaps = 1/91 (1%) Frame = +1 Query: 91 FWGVVVKPGETVKCDPGDSHY-HISTIALEAGKAEENVQVFVNTDDTRIMLGTLSVHNHP 267 FWG+ VKPG TVKC+PG H+S AL K +N ++V DD ++ +GTLSV +P Sbjct: 3 FWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKSDNALMYVKIDDQKLAIGTLSVDKNP 62 Query: 268 HVLADLVFKKEFELLHSSMTSNISFTGYKFD 360 H+ DL+F KEFEL H+S T+++ FTGYK + Sbjct: 63 HIQFDLIFDKEFELSHTSKTTSVFFTGYKVE 93
>HD2B_MAIZE (Q9M4U5) Histone deacetylase 2b (HD2b) (Zm-HD2b)| Length = 303 Score = 94.0 bits (232), Expect(2) = 1e-19 Identities = 42/91 (46%), Positives = 61/91 (67%), Gaps = 1/91 (1%) Frame = +1 Query: 91 FWGVVVKPGETVKCDPGDSHY-HISTIALEAGKAEENVQVFVNTDDTRIMLGTLSVHNHP 267 FWG+ VKPG TVKC+PG H+S AL K ++ ++V DD ++ +GTLS+ +P Sbjct: 3 FWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVDDKKLAIGTLSIDKYP 62 Query: 268 HVLADLVFKKEFELLHSSMTSNISFTGYKFD 360 + DLVF KEFEL H+S T+++ F+GYK + Sbjct: 63 QIQFDLVFNKEFELSHTSKTTSVFFSGYKVE 93 Score = 22.3 bits (46), Expect(2) = 1e-19 Identities = 11/62 (17%), Positives = 27/62 (43%) Frame = +3 Query: 483 DESDEEVPMAIPLDFNTDANKNNETAHDANKLIAPRPADAPSSIPEATVEETNTPGKQKA 662 D DEE + IP+ E + K +A + + + + + ++++ + ++ Sbjct: 104 DSEDEEEELNIPVIKENGKADGKEEQKNQEKAVAATASKSSLGLEKKSKDDSDDSDEDES 163 Query: 663 DD 668 DD Sbjct: 164 DD 165
>HD2A_SOYBN (Q8LJS2) Histone deacetylase 2a (HD2a) (Nucleolar histone| deacetylase HD2-p39) Length = 295 Score = 71.6 bits (174), Expect = 2e-12 Identities = 40/94 (42%), Positives = 57/94 (60%), Gaps = 6/94 (6%) Frame = +1 Query: 91 FWGVVVKPGETVKCDPGD---SHYHISTIALEAGKAE---ENVQVFVNTDDTRIMLGTLS 252 FWGV VK G+TV DP D S+ HIS +AL K + E V +++ + +I+LGTLS Sbjct: 3 FWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGTLS 62 Query: 253 VHNHPHVLADLVFKKEFELLHSSMTSNISFTGYK 354 PH+ DLV + EL H+S ++++ F GYK Sbjct: 63 RDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYK 96
>HD2B_ARATH (Q56WH4) Histone deacetylase 2b (HD-tuins protein 2)| Length = 306 Score = 69.7 bits (169), Expect = 7e-12 Identities = 39/90 (43%), Positives = 51/90 (56%), Gaps = 2/90 (2%) Frame = +1 Query: 91 FWGVVVKPGETVKCDPG-DSHYHISTIALEAG-KAEENVQVFVNTDDTRIMLGTLSVHNH 264 FWGV V P K P DS HIS +L+ K+ E+V + V ++++GTLS Sbjct: 3 FWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVVLSVTVGGAKLVIGTLSQDKF 62 Query: 265 PHVLADLVFKKEFELLHSSMTSNISFTGYK 354 P + DLVF KEFEL HS +N+ F GYK Sbjct: 63 PQISFDLVFDKEFELSHSGTKANVHFIGYK 92
>HD2C_ARATH (Q9LZR5) Histone deacetylase 2c (HD-tuins protein 3)| Length = 294 Score = 66.2 bits (160), Expect = 8e-11 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 3/93 (3%) Frame = +1 Query: 91 FWGVVVKPGETVKCDPG-DSHYHISTIALEAGK--AEENVQVFVNTDDTRIMLGTLSVHN 261 FWGV VK G+ + DPG D HIS +AL K E +Q++V ++++GTLS Sbjct: 3 FWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNNVTEPIQLYVTVGSDKLLIGTLSHEK 62 Query: 262 HPHVLADLVFKKEFELLHSSMTSNISFTGYKFD 360 P + ++V ++ F L H+ ++ F+GYK D Sbjct: 63 FPQLSTEIVLERNFALSHTWKNGSVFFSGYKVD 95
>HD2A_SOLCH (Q6V9I6) Histone deacetylase 2a (HD2a) (ScHD2a)| Length = 269 Score = 63.2 bits (152), Expect = 7e-10 Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 3/91 (3%) Frame = +1 Query: 91 FWGVVVKPGETVKCDPGDSHY-HISTIALEAGKAE--ENVQVFVNTDDTRIMLGTLSVHN 261 FWG VK GE + PGD H+S +L K + E+V + VN D +++LGTL+ Sbjct: 3 FWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDKSESVCLSVNIDGKKLVLGTLNSEK 62 Query: 262 HPHVLADLVFKKEFELLHSSMTSNISFTGYK 354 P DLVF ++FEL H+ + ++ F GYK Sbjct: 63 VPQQQFDLVFDRDFELSHNLKSGSVYFFGYK 93
>HD2A_ARATH (Q9FVE6) Histone deacetylase 2a (HD-tuins protein 1)| Length = 245 Score = 62.0 bits (149), Expect = 2e-09 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Frame = +1 Query: 91 FWGVVVKPGETVKCDPGDSHY-HISTIALEA--GKAEENVQVFVNTDDTRIMLGTLSVHN 261 FWG+ VK G+ V P + H+S +L K E V + V + ++LGTLS N Sbjct: 3 FWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKGEFVPLHVKVGNQNLVLGTLSTEN 62 Query: 262 HPHVLADLVFKKEFELLHSSMTSNISFTGYK 354 P + DLVF KEFEL H+ ++ F GYK Sbjct: 63 IPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 93
>HD2D_ARATH (Q9M4T3) Histone deacetylase 2d (HD-tuins protein 4)| Length = 203 Score = 46.6 bits (109), Expect = 7e-05 Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 6/94 (6%) Frame = +1 Query: 91 FWGVVVKPGETVKCDPGDSH-YHISTIAL---EAGKAEENVQVFV--NTDDTRIMLGTLS 252 FWG+ +KPG+ K D H S + L E K +E V+V D+ M+G LS Sbjct: 3 FWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGNLS 62 Query: 253 VHNHPHVLADLVFKKEFELLHSSMTSNISFTGYK 354 P DL EFE+ H+S TS++ GY+ Sbjct: 63 -QKFPQFSIDLYLGHEFEISHNS-TSSVYLIGYR 94
>I329_ASFB7 (P27945) Late protein I329L precursor| Length = 329 Score = 33.9 bits (76), Expect = 0.45 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%) Frame = +3 Query: 417 TCICVL*LFSCLVTS----HSCTKQGDESDEEVPMAIPLDFNTDANKNNETA 560 +CI L LF CL+ S +SCTKQ S +P+ F+ +++ ETA Sbjct: 248 SCISFLFLFICLLRSICKKYSCTKQDKSSHNYIPLIPSYTFSLKKHRHPETA 299
>OSTP_RAT (P08721) Osteopontin precursor (Bone sialoprotein-1) (Secreted| phosphoprotein 1) (SPP-1) Length = 317 Score = 31.2 bits (69), Expect = 2.9 Identities = 13/45 (28%), Positives = 29/45 (64%) Frame = +3 Query: 453 VTSHSCTKQGDESDEEVPMAIPLDFNTDANKNNETAHDANKLIAP 587 +TS +++ DE+ + +P+A L +D + N +T+H++++L P Sbjct: 174 LTSRMKSQESDEAIKVIPVAQRLSVPSDQDSNGKTSHESSQLDEP 218
>CPSKS_GIBFU (Q9UVY5) Ent-kaurene synthase (EC 4.2.3.19) (EC 5.5.1.13)| (Ent-copalyl diphosphate synthase) (CPS/KS) (GfCPS/KS) Length = 952 Score = 31.2 bits (69), Expect = 2.9 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Frame = +1 Query: 103 VVKPGETVKCDPGDSHYHISTIALEAGKAEENVQVF----VNTDDTRIMLGTLSVHNHPH 270 ++K G T+K GD +STI LEA + E V F + DDT L LS+ N P Sbjct: 287 LLKVGFTLKQIDGDGLRGLSTILLEALRDENGVIGFAPRTADVDDTAKALLALSLVNQP- 345 Query: 271 VLADLVFK 294 V D++ K Sbjct: 346 VSPDIMIK 353
>RL1D1_PONPY (Q5RCE6) Ribosomal L1 domain-containing protein 1| Length = 490 Score = 30.4 bits (67), Expect = 5.0 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 11/71 (15%) Frame = +3 Query: 474 KQGDESDEEVPMAIPLDFNTDANKNNETAHDANKLIAPRPADAPS--------SIPEA-- 623 K +ES++E+P +P+ T AN+ E A +P + PS ++P + Sbjct: 356 KATNESEDEIPQLVPIGKKTPANEKVEIQKHATGKKSPAKSPNPSTPRGKKRKALPASET 415 Query: 624 -TVEETNTPGK 653 E+ TPGK Sbjct: 416 PKAAESETPGK 426
>RL1D1_HUMAN (O76021) Ribosomal L1 domain-containing protein 1 (Cellular| senescence-inhibited gene protein) (PBK1 protein) (CATX-11) Length = 490 Score = 30.4 bits (67), Expect = 5.0 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 11/71 (15%) Frame = +3 Query: 474 KQGDESDEEVPMAIPLDFNTDANKNNETAHDANKLIAPRPADAPS--------SIPEA-- 623 K +ES++E+P +P+ T AN+ E A +P + PS ++P + Sbjct: 356 KATNESEDEIPQLVPIGKKTPANEKVEIQKHATGKKSPAKSPNPSTPRGKKRKALPASET 415 Query: 624 -TVEETNTPGK 653 E+ TPGK Sbjct: 416 PKAAESETPGK 426
>Y538_VIBPA (Q87S86) Hypothetical response regulatory protein VP0538| Length = 242 Score = 30.4 bits (67), Expect = 5.0 Identities = 22/92 (23%), Positives = 42/92 (45%) Frame = +1 Query: 100 VVVKPGETVKCDPGDSHYHISTIALEAGKAEENVQVFVNTDDTRIMLGTLSVHNHPHVLA 279 +V+ ETV+C D IS + + + + Q+ + T + + L V H L Sbjct: 147 IVIMATETVECAYSD----ISGVHVRSTSQTASTQLTLKTLEEKTPL----VRCHRQYLV 198 Query: 280 DLVFKKEFELLHSSMTSNISFTGYKFDIMKRY 375 + E +LL + + I+ TG++ + +RY Sbjct: 199 SIKAISEIKLLENGLAEIITKTGFEIPVSRRY 230
>TRAI1_ECOLI (P14565) Protein traI (DNA helicase I) (EC 3.6.1.-) [Contains:| Trai* protein] Length = 1756 Score = 30.0 bits (66), Expect = 6.6 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = +1 Query: 97 GVVVKPGETVKCDPGDSHYHISTIALEAGKAEENVQVFVNTDDTRIMLGT 246 G+ PG TV D G+ T+ L G A NVQV + R G+ Sbjct: 496 GMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRTGTGS 545
>SY63_DISOM (P24507) Synaptotagmin C (Synaptic vesicle protein O-p65-C)| Length = 537 Score = 29.6 bits (65), Expect = 8.6 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +3 Query: 513 IPLDFNTDANKNN-ETAHDANKLIAPRPADAPSSIPEATVEETNTP 647 IP+D ++ + +NN AH ++ AP PA +S+P ++ ++P Sbjct: 151 IPVDTSSGSKENNIPNAHSQQQVSAPPPATRFNSLPRPIPQQLSSP 196 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,124,618 Number of Sequences: 219361 Number of extensions: 1812516 Number of successful extensions: 4649 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4462 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4628 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
