Clone Information

BLAST Search Result

Clone Name	bags11f24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AL157700.13\| Human DNA sequence from clone RP6-201G10 on chr...	46	0.13
2	gb\|AC125531.3\| Mus musculus BAC clone RP23-396D12 from chromosom...	44	0.52
3	gb\|AC119805.6\| Mus musculus chromosome 16, clone RP23-144H22, co...	44	0.52
4	dbj\|AP007167.1\| Aspergillus oryzae RIB40 genomic DNA, SC020	44	0.52
5	emb\|AL845516.8\| Zebrafish DNA sequence from clone DKEY-43F11, co...	44	0.52
6	gb\|AC117208.3\| Mus musculus BAC clone RP23-279D15 from 10, compl...	44	0.52
7	gb\|AC091470.16\| Mus musculus chromosome 3, clone RP23-237K2, com...	42	2.0
8	gb\|AC175831.3\| Mus musculus BAC clone RP24-285G1 from chromosome...	42	2.0
9	gb\|AY973008.1\| Neoalsomitra sarcophylla tRNA-Leu (trnL) gene, pa...	42	2.0
10	gb\|U64840.1\| Caenorhabditis elegans cosmid ZC317, complete sequence	42	2.0
11	gb\|AC122044.3\| Mus musculus BAC clone RP24-449D16 from chromosom...	42	2.0
12	emb\|CR860852.1\| Pongo pygmaeus mRNA; cDNA DKFZp469O1614 (from cl...	42	2.0
13	emb\|CR858108.1\| Pongo pygmaeus mRNA; cDNA DKFZp468L2411 (from cl...	42	2.0
14	gb\|AC156567.3\| Mus musculus BAC clone RP23-333F2 from chromosome...	42	2.0
15	gb\|AC018802.8\| Homo sapiens BAC clone RP11-315L16 from 2, comple...	42	2.0
16	emb\|AJ224516.1\|GGA224516 Gallus gallus IL-2 gene	42	2.0
17	emb\|AL772335.5\| Mouse DNA sequence from clone RP23-415F19 on chr...	42	2.0
18	dbj\|AP000766.4\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	42	2.0
19	gb\|AC160244.11\| Mus musculus chromosome 5, clone RP24-212G3, com...	40	8.1
20	gb\|AC121311.16\| Mus musculus chromosome 3, clone RP24-317L5, com...	40	8.1
21	gb\|AC124228.16\| Mus musculus chromosome 5, clone RP23-345O14, co...	40	8.1
22	gb\|AY701848.1\| Loligo pealei mitochondrial ubiquinone biosynthes...	40	8.1
23	gb\|AC008284.7\| Drosophila melanogaster clone BACR03M22, complete...	40	8.1
24	gb\|AC107733.14\| Mus musculus chromosome 5, clone RP23-410E2, com...	40	8.1
25	emb\|AJ973429.1\| Locusta migratoria mRNA for hypothetical protein...	40	8.1
26	emb\|AJ580003.1\|PFA580003 Plasmodium falciparum site-directed mut...	40	8.1
27	gb\|AC132426.3\| Mus musculus BAC clone RP23-312J19 from chromosom...	40	8.1
28	gb\|AC108117.2\| Homo sapiens chromosome 5 clone RP11-348K15, comp...	40	8.1
29	gb\|AC133000.5\| Rattus Norvegicus Strain CH230-62B6 BAC, BN/SsNHs...	40	8.1
30	emb\|BX546490.2\| Human DNA sequence from clone RP11-336F23 on chr...	40	8.1
31	emb\|AL157762.13\| Human DNA sequence from clone RP11-153I24 on ch...	40	8.1
32	emb\|AL662936.4\|OSJN00137 Oryza sativa genomic DNA, chromosome 4,...	40	8.1
33	emb\|AL928702.7\| Mouse DNA sequence from clone RP23-292J9 on chro...	40	8.1
34	gb\|AC126564.7\| Homo sapiens 12 BAC RP11-638F5 (Roswell Park Canc...	40	8.1
35	gb\|AC122700.2\| Homo sapiens chromosome 5 clone CTD-3136I2, compl...	40	8.1
36	gb\|AC157551.6\| Mus musculus chromosome 5, clone RP24-270K7, comp...	40	8.1
37	gb\|AC121332.4\| Homo sapiens 3 BAC RP11-290D10 (Roswell Park Canc...	40	8.1
38	gb\|AC092819.2\| Homo sapiens chromosome 8, clone RP11-716D16, com...	40	8.1
39	gb\|AC118002.2\| Homo sapiens chromosome 11, clone RP11-258H15, co...	40	8.1
40	gb\|AC152165.2\| Mus musculus BAC clone RP24-159A20 from chromosom...	40	8.1
41	gb\|AC157724.2\| Xenopus tropicalis clone ISB1-282F2, complete seq...	40	8.1
42	gb\|AC090791.6\| Homo sapiens chromosome 11, clone RP11-466I1, com...	40	8.1
43	gb\|AC161117.4\| Mus musculus BAC clone RP24-146I24 from chromosom...	40	8.1
44	emb\|BX855621.15\| Zebrafish DNA sequence from clone CH211-225C13,...	40	8.1
45	gb\|AC037492.5\|AC037492 Homo sapiens chromosome 8, clone RP11-38H...	40	8.1
46	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.1
47	gb\|AC092850.13\| Homo sapiens 12 BAC RP11-346B9 (Roswell Park Can...	40	8.1
48	gb\|AC068138.6\| Homo sapiens BAC clone RP11-813K12 from 2, comple...	40	8.1
49	gb\|AC092632.2\| Homo sapiens BAC clone RP11-337B18 from 2, comple...	40	8.1
50	gb\|AC024901.29\| Homo sapiens 12 BAC RP11-684M17 (Roswell Park Ca...	40	8.1
51	dbj\|AB016882.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	40	8.1
52	gb\|CP000033.1\| Lactobacillus acidophilus NCFM, complete genome	40	8.1
53	emb\|BX293565.25\| Zebrafish DNA sequence from clone DKEY-268M13 i...	40	8.1
54	emb\|BX005203.7\| Zebrafish DNA sequence from clone DKEY-110C1 in ...	40	8.1
55	gb\|AE003751.3\| Drosophila melanogaster chromosome 3R, section 89...	40	8.1
56	emb\|AJ312318.1\|RNO312318 Rattus norvegicus partial ste2 gene for...	40	8.1
57	emb\|AJ131835.1\|RNO131835 Rattus norvegicus partial ste1 gene for...	40	8.1
58	gb\|AC135085.3\| Mus musculus BAC clone RP24-317P24 from 1, comple...	40	8.1
59	gb\|BC050827.1\| Mus musculus DBF4 homolog (S. cerevisiae), mRNA (...	40	8.1
60	emb\|CR382128.1\| Yarrowia lipolytica chromosome B of strain CLIB1...	40	8.1
61	gb\|AC161461.5\| Mus musculus BAC clone RP23-104L7 from chromosome...	40	8.1
62	dbj\|AP004938.1\| Lotus japonicus genomic DNA, chromosome 5, clone...	40	8.1
63	emb\|AL928811.8\| Mouse DNA sequence from clone RP23-74P23 on chro...	40	8.1
64	emb\|AL596116.14\| Mouse DNA sequence from clone RP23-317F9 on chr...	40	8.1
65	emb\|AL356497.3\| Human DNA sequence from clone RP4-578N1 on chrom...	40	8.1

>emb|AL157700.13| Human DNA sequence from clone RP6-201G10 on chromosome Xq12-13.1
             Contains the 3' end of the OPHN1 gene for oligophrenin 1,
             complete sequence
          Length = 190611

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 74    atttatccttttgttttgttaca 96
             |||||||||||||||||||||||
Sbjct: 57254 atttatccttttgttttgttaca 57232

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>gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosome 10, complete
             sequence
          Length = 219818

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 55    tgttgttggctttttaattatt 76
             ||||||||||||||||||||||
Sbjct: 19349 tgttgttggctttttaattatt 19328

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>gb|AC119805.6| Mus musculus chromosome 16, clone RP23-144H22, complete sequence
          Length = 215566

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 516   atatggatatatattctttttc 537
             ||||||||||||||||||||||
Sbjct: 91825 atatggatatatattctttttc 91804

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>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020
          Length = 1824958

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 64      ctttttaattatttatcctttt 85
               ||||||||||||||||||||||
Sbjct: 1106898 ctttttaattatttatcctttt 1106877

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>emb|AL845516.8| Zebrafish DNA sequence from clone DKEY-43F11, complete sequence
          Length = 205826

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 65     tttttaattatttatccttttgttttgtta 94
              |||||||||||||||  |||||||||||||
Sbjct: 195639 tttttaattatttataattttgttttgtta 195668

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>gb|AC117208.3| Mus musculus BAC clone RP23-279D15 from 10, complete sequence
          Length = 174202

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 55   tgttgttggctttttaattatt 76
            ||||||||||||||||||||||
Sbjct: 7164 tgttgttggctttttaattatt 7185

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>gb|AC091470.16| Mus musculus chromosome 3, clone RP23-237K2, complete sequence
          Length = 141824

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 572   ctatgtagtatgagtatattt 592
             |||||||||||||||||||||
Sbjct: 28940 ctatgtagtatgagtatattt 28960

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>gb|AC175831.3| Mus musculus BAC clone RP24-285G1 from chromosome 3, complete sequence
          Length = 171981

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 229    tacataaatgaaataaaacga 249
              |||||||||||||||||||||
Sbjct: 110699 tacataaatgaaataaaacga 110719

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>gb|AY973008.1| Neoalsomitra sarcophylla tRNA-Leu (trnL) gene, partial sequence;
           trnL-trnF intergenic spacer, complete sequence; and
           tRNA-Phe (trnF) gene, partial sequence; chloroplast
          Length = 943

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 64  ctttttaattatttatccttt 84
           |||||||||||||||||||||
Sbjct: 604 ctttttaattatttatccttt 624

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>gb|U64840.1| Caenorhabditis elegans cosmid ZC317, complete sequence
          Length = 26291

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 65    tttttaattatttatccttttgttttgtt 93
             ||||| ||||||||| |||||||||||||
Sbjct: 11016 ttttttattatttattcttttgttttgtt 10988

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>gb|AC122044.3| Mus musculus BAC clone RP24-449D16 from chromosome 3, complete sequence
          Length = 123678

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 229   tacataaatgaaataaaacga 249
             |||||||||||||||||||||
Sbjct: 17722 tacataaatgaaataaaacga 17742

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>emb|CR860852.1| Pongo pygmaeus mRNA; cDNA DKFZp469O1614 (from clone DKFZp469O1614)
          Length = 3593

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 53  attgttgttggctttttaatt 73
           |||||||||||||||||||||
Sbjct: 941 attgttgttggctttttaatt 921

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>emb|CR858108.1| Pongo pygmaeus mRNA; cDNA DKFZp468L2411 (from clone DKFZp468L2411)
          Length = 3391

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 53  attgttgttggctttttaatt 73
           |||||||||||||||||||||
Sbjct: 739 attgttgttggctttttaatt 719

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>gb|AC156567.3| Mus musculus BAC clone RP23-333F2 from chromosome 13, complete sequence
          Length = 204778

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 559    gtggaggatattgctatgtag 579
              |||||||||||||||||||||
Sbjct: 116799 gtggaggatattgctatgtag 116779

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>gb|AC018802.8| Homo sapiens BAC clone RP11-315L16 from 2, complete sequence
          Length = 123993

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 58    tgttggctttttaattatttatcct 82
             |||||||||||||||||| ||||||
Sbjct: 73577 tgttggctttttaattatatatcct 73601

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>emb|AJ224516.1|GGA224516 Gallus gallus IL-2 gene
          Length = 3818

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 55   tgttgttggctttttaattat 75
            |||||||||||||||||||||
Sbjct: 3735 tgttgttggctttttaattat 3715

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>emb|AL772335.5| Mouse DNA sequence from clone RP23-415F19 on chromosome 4, complete
              sequence
          Length = 201702

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 65     tttttaattatttatccttttgttttgtt 93
              |||| |||||||||| |||||||||||||
Sbjct: 129563 ttttcaattatttatacttttgttttgtt 129591

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>dbj|AP000766.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-819C21, complete
             sequence
          Length = 118489

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 65    tttttaattatttatccttttgttttgtt 93
             |||||| ||||||||| ||||||||||||
Sbjct: 32244 tttttatttatttatctttttgttttgtt 32216

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>gb|AC160244.11| Mus musculus chromosome 5, clone RP24-212G3, complete sequence
          Length = 150276

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 66     ttttaattatttatccttttgttttgtt 93
              |||||| ||||||| |||||||||||||
Sbjct: 131948 ttttaaatatttattcttttgttttgtt 131921

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>gb|AC121311.16| Mus musculus chromosome 3, clone RP24-317L5, complete sequence
          Length = 221261

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    atttatccttttgttttgtt 93
             ||||||||||||||||||||
Sbjct: 85552 atttatccttttgttttgtt 85533

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>gb|AC124228.16| Mus musculus chromosome 5, clone RP23-345O14, complete sequence
          Length = 219244

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 227    agtacataaatgaaataaaacgat 250
              |||| |||||||||||||||||||
Sbjct: 111646 agtaaataaatgaaataaaacgat 111623

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>gb|AY701848.1| Loligo pealei mitochondrial ubiquinone biosynthesis protein
           COQ7-like (COQ7) mRNA, partial sequence
          Length = 499

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 132 atgtactgtagctgttgaag 151
           ||||||||||||||||||||
Sbjct: 238 atgtactgtagctgttgaag 257

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>gb|AC008284.7| Drosophila melanogaster clone BACR03M22, complete sequence
          Length = 161996

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    gctttttaattatttatcct 82
             ||||||||||||||||||||
Sbjct: 76194 gctttttaattatttatcct 76175

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>gb|AC107733.14| Mus musculus chromosome 5, clone RP23-410E2, complete sequence
          Length = 200403

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    tttatccttttgttttgtta 94
             ||||||||||||||||||||
Sbjct: 30730 tttatccttttgttttgtta 30749

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>emb|AJ973429.1| Locusta migratoria mRNA for hypothetical protein (ORF15), clone
           lmigEST15
          Length = 384

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 506 tccgtaagaaatatggatat 525
           ||||||||||||||||||||
Sbjct: 335 tccgtaagaaatatggatat 354

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>emb|AJ580003.1|PFA580003 Plasmodium falciparum site-directed mutant mRNA for phosphate
           transporter (piT gene)
          Length = 2010

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 69  taattatttatccttttgtt 88
           ||||||||||||||||||||
Sbjct: 803 taattatttatccttttgtt 784

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>gb|AC132426.3| Mus musculus BAC clone RP23-312J19 from chromosome 2, complete sequence
          Length = 189633

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 56    gttgttggctttttaattatttat 79
             ||||||| ||||||||||||||||
Sbjct: 16111 gttgttgtctttttaattatttat 16088

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>gb|AC108117.2| Homo sapiens chromosome 5 clone RP11-348K15, complete sequence
          Length = 159501

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 532   tttttccagtgaaattattt 551
             ||||||||||||||||||||
Sbjct: 44295 tttttccagtgaaattattt 44276

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>gb|AC133000.5| Rattus Norvegicus Strain CH230-62B6 BAC, BN/SsNHsd/MCW, complete sequence
          Length = 245581

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 510    taagaaatatggatatatat 529
              ||||||||||||||||||||
Sbjct: 157681 taagaaatatggatatatat 157662

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>emb|BX546490.2| Human DNA sequence from clone RP11-336F23 on chromosome 1, complete
             sequence
          Length = 110467

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 529   ttctttttccagtgaaatta 548
             ||||||||||||||||||||
Sbjct: 60904 ttctttttccagtgaaatta 60885

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>emb|AL157762.13| Human DNA sequence from clone RP11-153I24 on chromosome 13q33.1-34
             Contains the LIG4 gene for ligase IV, DNA, ATP-dependent,
             a novel gene (FLJ14906), the TNFSF13B gene for tumor
             necrosis factor (ligand) superfamily, member 13b and a CpG
             island, complete sequence
          Length = 185229

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    tatttatccttttgttttgt 92
             ||||||||||||||||||||
Sbjct: 62611 tatttatccttttgttttgt 62630

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>emb|AL662936.4|OSJN00137 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0052P16,
             complete sequence
          Length = 155702

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    atttatccttttgttttgtt 93
             ||||||||||||||||||||
Sbjct: 99835 atttatccttttgttttgtt 99854

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>emb|AL928702.7| Mouse DNA sequence from clone RP23-292J9 on chromosome 11 Contains a
            reduced expression 3 (Rex3) pseudogene, complete sequence
          Length = 62980

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 531  ctttttccagtgaaattatttatt 554
            |||||||||||||| |||||||||
Sbjct: 8753 ctttttccagtgaatttatttatt 8730

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>gb|AC126564.7| Homo sapiens 12 BAC RP11-638F5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 121242

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   aggtggaaaagagcttcaat 187
             ||||||||||||||||||||
Sbjct: 58468 aggtggaaaagagcttcaat 58449

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>gb|AC122700.2| Homo sapiens chromosome 5 clone CTD-3136I2, complete sequence
          Length = 118238

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 532   tttttccagtgaaattattt 551
             ||||||||||||||||||||
Sbjct: 16486 tttttccagtgaaattattt 16505

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>gb|AC157551.6| Mus musculus chromosome 5, clone RP24-270K7, complete sequence
          Length = 171680

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 66     ttttaattatttatccttttgttttgtt 93
              |||||| ||||||| |||||||||||||
Sbjct: 126498 ttttaaatatttattcttttgttttgtt 126525

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>gb|AC121332.4| Homo sapiens 3 BAC RP11-290D10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 28350

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    ttggctttttaattatttat 79
             ||||||||||||||||||||
Sbjct: 13929 ttggctttttaattatttat 13910

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>gb|AC092819.2| Homo sapiens chromosome 8, clone RP11-716D16, complete sequence
          Length = 153310

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 527   tattctttttccagtgaaat 546
             ||||||||||||||||||||
Sbjct: 96961 tattctttttccagtgaaat 96942

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>gb|AC118002.2| Homo sapiens chromosome 11, clone RP11-258H15, complete sequence
          Length = 160686

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 172    ggaaaagagcttcaattcacagta 195
              ||||||||| ||||||||||||||
Sbjct: 122407 ggaaaagagattcaattcacagta 122430

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>gb|AC152165.2| Mus musculus BAC clone RP24-159A20 from chromosome 5, complete sequence
          Length = 194519

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     tttatccttttgttttgtta 94
              ||||||||||||||||||||
Sbjct: 125462 tttatccttttgttttgtta 125443

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>gb|AC157724.2| Xenopus tropicalis clone ISB1-282F2, complete sequence
          Length = 79417

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 65    tttttaattatttatccttttgtt 88
             |||| |||||||||||||||||||
Sbjct: 68290 ttttgaattatttatccttttgtt 68313

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>gb|AC090791.6| Homo sapiens chromosome 11, clone RP11-466I1, complete sequence
          Length = 172865

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 172    ggaaaagagcttcaattcacagta 195
              ||||||||| ||||||||||||||
Sbjct: 106182 ggaaaagagattcaattcacagta 106205

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>gb|AC161117.4| Mus musculus BAC clone RP24-146I24 from chromosome 13, complete sequence
          Length = 195710

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 509    gtaagaaatatggatatatattcttttt 536
              |||| |||||||||||||| ||||||||
Sbjct: 170284 gtaacaaatatggatatattttcttttt 170257

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>emb|BX855621.15| Zebrafish DNA sequence from clone CH211-225C13, complete sequence
          Length = 178447

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 66    ttttaattatttatccttttgttttgtt 93
             |||||||||||||| | |||||||||||
Sbjct: 53808 ttttaattatttatacatttgttttgtt 53781

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>gb|AC037492.5|AC037492 Homo sapiens chromosome 8, clone RP11-38H17, complete sequence
          Length = 168278

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    atttatccttttgttttgtt 93
             ||||||||||||||||||||
Sbjct: 17496 atttatccttttgttttgtt 17477

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 74      atttatccttttgttttgtt 93
               ||||||||||||||||||||
Sbjct: 5399186 atttatccttttgttttgtt 5399205

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>gb|AC092850.13| Homo sapiens 12 BAC RP11-346B9 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 176733

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 168  aggtggaaaagagcttcaat 187
            ||||||||||||||||||||
Sbjct: 7273 aggtggaaaagagcttcaat 7254

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>gb|AC068138.6| Homo sapiens BAC clone RP11-813K12 from 2, complete sequence
          Length = 168698

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 431   aatatatgctactatactca 450
             ||||||||||||||||||||
Sbjct: 14315 aatatatgctactatactca 14296

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>gb|AC092632.2| Homo sapiens BAC clone RP11-337B18 from 2, complete sequence
          Length = 199385

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 512    agaaatatggatatatattc 531
              ||||||||||||||||||||
Sbjct: 105528 agaaatatggatatatattc 105547

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>gb|AC024901.29| Homo sapiens 12 BAC RP11-684M17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 129638

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 511   aagaaatatggatatatatt 530
             ||||||||||||||||||||
Sbjct: 18759 aagaaatatggatatatatt 18740

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>dbj|AB016882.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZA15
          Length = 79995

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 517   tatggatatatattcttttt 536
             ||||||||||||||||||||
Sbjct: 27981 tatggatatatattcttttt 28000

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>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome
          Length = 1993564

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     ttgttggctttttaattatt 76
              ||||||||||||||||||||
Sbjct: 224509 ttgttggctttttaattatt 224528

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>emb|BX293565.25| Zebrafish DNA sequence from clone DKEY-268M13 in linkage group 22,
             complete sequence
          Length = 160930

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    attatttatccttttgtttt 90
             ||||||||||||||||||||
Sbjct: 15193 attatttatccttttgtttt 15212

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>emb|BX005203.7| Zebrafish DNA sequence from clone DKEY-110C1 in linkage group 22,
              complete sequence
          Length = 214843

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     attatttatccttttgtttt 90
              ||||||||||||||||||||
Sbjct: 150057 attatttatccttttgtttt 150038

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>gb|AE003751.3| Drosophila melanogaster chromosome 3R, section 89 of 118 of the complete
              sequence
          Length = 307443

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     gctttttaattatttatcct 82
              ||||||||||||||||||||
Sbjct: 286451 gctttttaattatttatcct 286470

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>emb|AJ312318.1|RNO312318 Rattus norvegicus partial ste2 gene for estrogen sulfotransferase,
           alternative mRNA transcripts, exons 1a and 1b
          Length = 1399

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 518 atggatatatattctttttc 537
           ||||||||||||||||||||
Sbjct: 538 atggatatatattctttttc 557

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>emb|AJ131835.1|RNO131835 Rattus norvegicus partial ste1 gene for estrogen sulfotransferase,
            exons 1-2 and joined CDS
          Length = 5089

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 518  atggatatatattctttttc 537
            ||||||||||||||||||||
Sbjct: 2501 atggatatatattctttttc 2520

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>gb|AC135085.3| Mus musculus BAC clone RP24-317P24 from 1, complete sequence
          Length = 214594

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 573    tatgtagtatgagtatattt 592
              ||||||||||||||||||||
Sbjct: 134489 tatgtagtatgagtatattt 134470

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>gb|BC050827.1| Mus musculus DBF4 homolog (S. cerevisiae), mRNA (cDNA clone
            IMAGE:6329058), complete cds
          Length = 2275

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 75   tttatccttttgttttgtta 94
            ||||||||||||||||||||
Sbjct: 1794 tttatccttttgttttgtta 1775

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>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 131     tatgtactgtagctgttgaa 150
               ||||||||||||||||||||
Sbjct: 2923667 tatgtactgtagctgttgaa 2923686

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>gb|AC161461.5| Mus musculus BAC clone RP23-104L7 from chromosome 13, complete sequence
          Length = 234110

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 509   gtaagaaatatggatatatattcttttt 536
             |||| |||||||||||||| ||||||||
Sbjct: 20266 gtaacaaatatggatatattttcttttt 20239

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>dbj|AP004938.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT08M07, TM0096b,
             complete sequence
          Length = 65932

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    ttttaattatttatcctttt 85
             ||||||||||||||||||||
Sbjct: 46710 ttttaattatttatcctttt 46729

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>emb|AL928811.8| Mouse DNA sequence from clone RP23-74P23 on chromosome 2, complete
            sequence
          Length = 222061

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 56   gttgttggctttttaattatttat 79
            ||||||| ||||||||||||||||
Sbjct: 9658 gttgttgtctttttaattatttat 9635

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>emb|AL596116.14| Mouse DNA sequence from clone RP23-317F9 on chromosome 11, complete
              sequence
          Length = 217735

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 453    cagacatgaacatgaatgtg 472
              ||||||||||||||||||||
Sbjct: 135841 cagacatgaacatgaatgtg 135860

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>emb|AL356497.3| Human DNA sequence from clone RP4-578N1 on chromosome 11 Contains an
             STS and GSSs, complete sequence
          Length = 46344

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 172   ggaaaagagcttcaattcacagta 195
             ||||||||| ||||||||||||||
Sbjct: 35386 ggaaaagagattcaattcacagta 35409


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,614,451
Number of Sequences: 3902068
Number of extensions: 7614451
Number of successful extensions: 202084
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 201786
Number of HSP's gapped (non-prelim): 298
length of query: 592
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 569
effective length of database: 17,143,297,704
effective search space: 9754536393576
effective search space used: 9754536393576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result