>gb|AY123416.1| Triticum aestivum putative cytochrome c oxidase subunit mRNA,
           complete cds
          Length = 689

 Score =  307 bits (155), Expect = 2e-80
 Identities = 195/208 (93%), Gaps = 4/208 (1%)
 Strand = Plus / Plus

                                                                       
Query: 351 ggttgagcgttggaacgagcaatgggagaatggcacattccctggacccctgtaagcttc 410
           |||||| ||||||||||||||| ||| |||||| || |||||||||||||||||||||||
Sbjct: 432 ggttgaacgttggaacgagcaacgggggaatggtacgttccctggacccctgtaagcttc 491

                                                                       
Query: 411 agtggcgctggaaggacaaacataccatcatccccacctacctccctggtgactggacaa 470
           ||||||||||||||||||||||| |||||||||||||||    |||||||||||||||||
Sbjct: 492 agtggcgctggaaggacaaacatgccatcatccccacct----ccctggtgactggacaa 547

                                                                       
Query: 471 agttactttgtgccgagaattcgccacttccctttcctttttgaggactacttacaaata 530
           ||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct: 548 agttactttgtgccgagaattcgtcaccttcctttcctttttgaggactacttacaaata 607

                                       
Query: 531 agtttttgacttgatgtaagctgaaggt 558
           ||||||||||||||||||||||||||||
Sbjct: 608 agtttttgacttgatgtaagctgaaggt 635

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                            
Query: 342      ttttatgcaggttgagcgttggaacgagcaatgggagaatggcacattccctggacccct 401
                |||| ||||| |||||||||||||||| ||| | |||||||||||||||||||||||| |
Sbjct: 25638594 ttttgtgcagattgagcgttggaacgaacaacgtgagaatggcacattccctggaccctt 25638535

                   
Query: 402      gta 404
                |||
Sbjct: 25638534 gta 25638532

>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0594D10
          Length = 143200

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                         
Query: 342   ttttatgcaggttgagcgttggaacgagcaatgggagaatggcacattccctggacccct 401
             |||| ||||| |||||||||||||||| ||| | |||||||||||||||||||||||| |
Sbjct: 92567 ttttgtgcagattgagcgttggaacgaacaacgtgagaatggcacattccctggaccctt 92508

                
Query: 402   gta 404
             |||
Sbjct: 92507 gta 92505

>ref|NM_189870.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 525

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                               
Query: 353 ttgagcgttggaacgagcaatgggagaatggcacattccctggacccctgta 404
           |||||||||||||||| ||| | |||||||||||||||||||||||| ||||
Sbjct: 473 ttgagcgttggaacgaacaacgtgagaatggcacattccctggacccttgta 524

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                           
Query: 349      caggttgagcgttggaacgagcaatgggagaatggcacattccctggacccctgtaagc 407
                ||||||||||||||||| |||||| |||| || ||||| ||||||||||| ||||||||
Sbjct: 15480349 caggttgagcgttggaatgagcaacgggaaaacggcaccttccctggacctctgtaagc 15480407

>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete
             sequence
          Length = 164705

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                        
Query: 349   caggttgagcgttggaacgagcaatgggagaatggcacattccctggacccctgtaagc 407
             ||||||||||||||||| |||||| |||| || ||||| ||||||||||| ||||||||
Sbjct: 21177 caggttgagcgttggaatgagcaacgggaaaacggcaccttccctggacctctgtaagc 21119

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                           
Query: 349      caggttgagcgttggaacgagcaatgggagaatggcacattccctggacccctgtaagc 407
                ||||||||||||||||| |||||| |||| || ||||| ||||||||||| ||||||||
Sbjct: 15474883 caggttgagcgttggaatgagcaacgggaaaacggcaccttccctggacctctgtaagc 15474941

>dbj|AB047975.1| Oryza sativa (japonica cultivar-group) COX6b1 gene for cytochrome c
            oxidase subunit 6b, complete cds
          Length = 4626

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                       
Query: 349  caggttgagcgttggaacgagcaatgggagaatggcacattccctggacccctgtaagc 407
            ||||||||||||||||| |||||| |||| || ||||| ||||||||||| ||||||||
Sbjct: 4302 caggttgagcgttggaatgagcaacgggaaaacggcaccttccctggacctctgtaagc 4360

>ref|XM_470804.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 875

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                    
Query: 351 ggttgagcgttggaacgagcaatgggagaatggcacattccctggacccctgtaagc 407
           ||||||||||||||| |||||| |||| || ||||| ||||||||||| ||||||||
Sbjct: 520 ggttgagcgttggaatgagcaacgggaaaacggcaccttccctggacctctgtaagc 576

>dbj|AK120174.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033A17, full
           insert sequence
          Length = 887

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                    
Query: 351 ggttgagcgttggaacgagcaatgggagaatggcacattccctggacccctgtaagc 407
           ||||||||||||||| |||||| |||| || ||||| ||||||||||| ||||||||
Sbjct: 552 ggttgagcgttggaatgagcaacgggaaaacggcaccttccctggacctctgtaagc 608

>dbj|AB025187.1| Oryza sativa (japonica cultivar-group) mRNA for cytochrome c
           oxidase subunit 6b-1, complete cds
          Length = 951

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                    
Query: 351 ggttgagcgttggaacgagcaatgggagaatggcacattccctggacccctgtaagc 407
           ||||||||||||||| |||||| |||| || ||||| ||||||||||| ||||||||
Sbjct: 562 ggttgagcgttggaatgagcaacgggaaaacggcaccttccctggacctctgtaagc 618

>gb|BT017421.1| Zea mays clone EL01N0402E11.c mRNA sequence
          Length = 832

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                  
Query: 351 ggttgagcgttggaacgagcaatgggagaatggcacattccctggacccctgtaa 405
           |||||| || |||||||||||| | || || ||||| ||||||||||| ||||||
Sbjct: 526 ggttgatcgctggaacgagcaacgcgaaaacggcaccttccctggacctctgtaa 580

>gb|AY103760.1| Zea mays PCO110275 mRNA sequence
          Length = 2705

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                   
Query: 351  ggttgagcgttggaacgagcaatgggagaatggcacattccctggacccctgtaa 405
            |||||| || |||||||||||  | || |||||||| ||||||||||| ||||||
Sbjct: 2402 ggttgaacgctggaacgagcagcgtgaaaatggcaccttccctggacctctgtaa 2456

>emb|CR937007.1| uncultured archaeon fos122a6+28b5
          Length = 62584

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 441   tccccacctacctccctggtga 462
             ||||||||||||||||||||||
Sbjct: 30959 tccccacctacctccctggtga 30980

>gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete
             sequence
          Length = 107200

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                              
Query: 347   tgcaggttgagcgttggaacgagcaatgggagaatggcacattccctgg 395
             ||||||||||  | |||||||||||| | || ||||| |||||||||||
Sbjct: 81178 tgcaggttgataggtggaacgagcaaagagaaaatggaacattccctgg 81130

>gb|AC123646.8| Mus musculus chromosome 19, clone RP23-104P24, complete sequence
          Length = 189534

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 492    cgccacttccctttcctttt 511
              ||||||||||||||||||||
Sbjct: 124326 cgccacttccctttcctttt 124345

>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    ggaacgagcaatgggagaat 381
              ||||||||||||||||||||
Sbjct: 839825 ggaacgagcaatgggagaat 839806

>gb|AC025237.7| Homo sapiens BAC clone RP11-414D7 from 4, complete sequence
          Length = 61502

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 507  ctttttgaggactacttacaaata 530
            ||||||||||||||||| ||||||
Sbjct: 6722 ctttttgaggactacttccaaata 6745

>gb|AC009957.11| Homo sapiens BAC clone RP11-285H23 from 2, complete sequence
          Length = 191119

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     aattataaacttgatactta 62
              ||||||||||||||||||||
Sbjct: 116624 aattataaacttgatactta 116643

>gb|AC092408.3| Papio anubis clone RP41-446H8, complete sequence
          Length = 184036

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   gagctgatggtggcttgcat 213
             ||||||||||||||||||||
Sbjct: 46385 gagctgatggtggcttgcat 46404

>emb|BX537115.11| Zebrafish DNA sequence from clone CH211-207B20 in linkage group 14,
              complete sequence
          Length = 192331

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    agaatgatcggtgaaccttg 165
              ||||||||||||||||||||
Sbjct: 174164 agaatgatcggtgaaccttg 174183

>dbj|BS000118.1| Pan troglodytes chromosome 22 clone:PTB-141G07, map 22, complete
            sequences
          Length = 71456

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 439  catccccacctacctccctg 458
            ||||||||||||||||||||
Sbjct: 1689 catccccacctacctccctg 1670

>dbj|AB063285.1| Homo sapiens HLCS gene for holocarboxylase synthetase, complete cds
          Length = 250000

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 439    catccccacctacctccctg 458
              ||||||||||||||||||||
Sbjct: 143628 catccccacctacctccctg 143647

>dbj|AP001727.1| Homo sapiens genomic DNA, chromosome 21q, section 71/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 439   catccccacctacctccctg 458
             ||||||||||||||||||||
Sbjct: 70284 catccccacctacctccctg 70265

>gb|AC102630.6| Mus musculus chromosome 1, clone RP23-473M13, complete sequence
          Length = 196529

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 418    ctggaaggacaaacataccatcat 441
              |||||||||||||||||| |||||
Sbjct: 115115 ctggaaggacaaacatacaatcat 115092

>gb|AC157571.6| Mus musculus BAC clone RP23-111F7 from chromosome 12, complete sequence
          Length = 208117

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 368   agcaatgggagaatggc-acattccctg 394
             ||||||||||||||||| ||||||||||
Sbjct: 16668 agcaatgggagaatggcaacattccctg 16695

>gb|AC174598.2| Mus musculus BAC clone RP24-234D9 from chromosome 12, complete sequence
          Length = 199237

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 368    agcaatgggagaatggc-acattccctg 394
              ||||||||||||||||| ||||||||||
Sbjct: 122304 agcaatgggagaatggcaacattccctg 122277

>gb|AC011604.10| Homo sapiens 12p12-31.7-37.2 BAC RP11-80N2 (Roswell Park Cancer Institute
              Human BAC Library) complete sequence
          Length = 175606

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     taccatatgaaattatcttt 110
              ||||||||||||||||||||
Sbjct: 125501 taccatatgaaattatcttt 125482

>dbj|AP000700.1| Homo sapiens genomic DNA, chromosome 21q22.2, cosmid clone:Q2F5,
             CBR1-HLCS region
          Length = 39020

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 439   catccccacctacctccctg 458
             ||||||||||||||||||||
Sbjct: 23504 catccccacctacctccctg 23485

>emb|AL772406.4| Mouse DNA sequence from clone RP23-321K16 on chromosome 4, complete
             sequence
          Length = 151744

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    catatgaaattatctttgtg 113
             ||||||||||||||||||||
Sbjct: 90827 catatgaaattatctttgtg 90846


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,255,022
Number of Sequences: 3902068
Number of extensions: 5255022
Number of successful extensions: 164964
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 164801
Number of HSP's gapped (non-prelim): 164
length of query: 558
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 535
effective length of database: 17,143,297,704
effective search space: 9171664271640
effective search space used: 9171664271640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)