ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags10o12 |
|---|---|
| Clone Library Name | barley_pub |
>ENGD_BACSU (P37518) GTP-dependent nucleic acid-binding protein engD| Length = 366 Score = 57.4 bits (137), Expect(2) = 2e-13 Identities = 32/87 (36%), Positives = 47/87 (54%) Frame = +1 Query: 79 KXDPXSDXDVINLELIFCDLEQIEKRLXKLKKSXXXDPQXXXXEGAERSGXEKILDALMD 258 K DP D + INLELI D+E +EKR+ ++ K + E S K+ +A Sbjct: 118 KVDPIDDIETINLELILADMETVEKRITRVSKLAKQKDKDAVFEFEILS---KLKEAFES 174 Query: 259 GKPARSVDLPDXEKEAXXHLYLLTMKP 339 KPARSV+ + +++ L+LLT KP Sbjct: 175 EKPARSVEFTEEQQKLVKQLHLLTSKP 201 Score = 35.4 bits (80), Expect(2) = 2e-13 Identities = 15/25 (60%), Positives = 19/25 (76%) Frame = +3 Query: 6 IREVDSILQVXRCFEDDDIVHVNGK 80 IR+VD+I V R F DD+I HV+GK Sbjct: 94 IRQVDAICHVVRAFSDDNITHVSGK 118
>ENGD_HAEIN (P44681) GTP-dependent nucleic acid-binding protein engD| Length = 362 Score = 47.0 bits (110), Expect(2) = 1e-11 Identities = 31/87 (35%), Positives = 40/87 (45%) Frame = +1 Query: 79 KXDPXSDXDVINLELIFCDLEQIEKRLXKLKKSXXXDPQXXXXEGAERSGXEKILDALMD 258 K DP D D IN EL DL+ E+ + +L+K + E S EKIL L + Sbjct: 117 KIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKF---ELSVMEKILPVLEN 173 Query: 259 GKPARSVDLPDXEKEAXXHLYLLTMKP 339 RSV L E +A LT+KP Sbjct: 174 AGMIRSVGLDKEELQAIKSYNFLTLKP 200 Score = 39.7 bits (91), Expect(2) = 1e-11 Identities = 18/25 (72%), Positives = 20/25 (80%) Frame = +3 Query: 6 IREVDSILQVXRCFEDDDIVHVNGK 80 IRE D+I V RCFE+DDIVHV GK Sbjct: 93 IRETDAIGHVVRCFENDDIVHVAGK 117
>ENGD_SHIFL (P0ABU4) GTP-dependent nucleic acid-binding protein engD| Length = 362 Score = 47.4 bits (111), Expect(2) = 7e-11 Identities = 29/87 (33%), Positives = 44/87 (50%) Frame = +1 Query: 79 KXDPXSDXDVINLELIFCDLEQIEKRLXKLKKSXXXDPQXXXXEGAERSGXEKILDALMD 258 K +P D +VIN EL DL+ E+ + +++K + AE + EK L L + Sbjct: 117 KVNPADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAK---AELAVLEKCLPQLEN 173 Query: 259 GKPARSVDLPDXEKEAXXHLYLLTMKP 339 R++DL EK A +L LT+KP Sbjct: 174 AGMLRALDLSAEEKAAIRYLSFLTLKP 200 Score = 37.0 bits (84), Expect(2) = 7e-11 Identities = 15/25 (60%), Positives = 21/25 (84%) Frame = +3 Query: 6 IREVDSILQVXRCFEDDDIVHVNGK 80 IRE ++I V RCFE+D+I+HV+GK Sbjct: 93 IRETEAIGHVVRCFENDNIIHVSGK 117
>ENGD_ECOLI (P0ABU2) GTP-dependent nucleic acid-binding protein engD| Length = 362 Score = 47.4 bits (111), Expect(2) = 7e-11 Identities = 29/87 (33%), Positives = 44/87 (50%) Frame = +1 Query: 79 KXDPXSDXDVINLELIFCDLEQIEKRLXKLKKSXXXDPQXXXXEGAERSGXEKILDALMD 258 K +P D +VIN EL DL+ E+ + +++K + AE + EK L L + Sbjct: 117 KVNPADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAK---AELAVLEKCLPQLEN 173 Query: 259 GKPARSVDLPDXEKEAXXHLYLLTMKP 339 R++DL EK A +L LT+KP Sbjct: 174 AGMLRALDLSAEEKAAIRYLSFLTLKP 200 Score = 37.0 bits (84), Expect(2) = 7e-11 Identities = 15/25 (60%), Positives = 21/25 (84%) Frame = +3 Query: 6 IREVDSILQVXRCFEDDDIVHVNGK 80 IRE ++I V RCFE+D+I+HV+GK Sbjct: 93 IRETEAIGHVVRCFENDNIIHVSGK 117
>ENGD_ECO57 (P0ABU3) GTP-dependent nucleic acid-binding protein engD| Length = 362 Score = 47.4 bits (111), Expect(2) = 7e-11 Identities = 29/87 (33%), Positives = 44/87 (50%) Frame = +1 Query: 79 KXDPXSDXDVINLELIFCDLEQIEKRLXKLKKSXXXDPQXXXXEGAERSGXEKILDALMD 258 K +P D +VIN EL DL+ E+ + +++K + AE + EK L L + Sbjct: 117 KVNPADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAK---AELAVLEKCLPQLEN 173 Query: 259 GKPARSVDLPDXEKEAXXHLYLLTMKP 339 R++DL EK A +L LT+KP Sbjct: 174 AGMLRALDLSAEEKAAIRYLSFLTLKP 200 Score = 37.0 bits (84), Expect(2) = 7e-11 Identities = 15/25 (60%), Positives = 21/25 (84%) Frame = +3 Query: 6 IREVDSILQVXRCFEDDDIVHVNGK 80 IRE ++I V RCFE+D+I+HV+GK Sbjct: 93 IRETEAIGHVVRCFENDNIIHVSGK 117
>ENGD_HAEDU (Q7VMI2) GTP-dependent nucleic acid-binding protein engD| Length = 362 Score = 44.3 bits (103), Expect(2) = 9e-11 Identities = 30/87 (34%), Positives = 39/87 (44%) Frame = +1 Query: 79 KXDPXSDXDVINLELIFCDLEQIEKRLXKLKKSXXXDPQXXXXEGAERSGXEKILDALMD 258 K DP D + IN EL DL+ E+ + +L+K + E S EKIL L + Sbjct: 117 KIDPADDIETINTELALADLDSCERAIQRLQKRAKSGDKDAKF---ELSILEKILPVLEN 173 Query: 259 GKPARSVDLPDXEKEAXXHLYLLTMKP 339 RSV L E A LT+KP Sbjct: 174 AGMIRSVALDKDELHAIKGYNFLTLKP 200 Score = 39.7 bits (91), Expect(2) = 9e-11 Identities = 18/25 (72%), Positives = 20/25 (80%) Frame = +3 Query: 6 IREVDSILQVXRCFEDDDIVHVNGK 80 IRE D+I V RCFE+DDIVHV GK Sbjct: 93 IRETDAIGHVVRCFENDDIVHVAGK 117
>ENGD_PASMU (Q9CP90) GTP-dependent nucleic acid-binding protein engD| Length = 362 Score = 45.4 bits (106), Expect(2) = 1e-10 Identities = 29/85 (34%), Positives = 40/85 (47%) Frame = +1 Query: 85 DPXSDXDVINLELIFCDLEQIEKRLXKLKKSXXXDPQXXXXEGAERSGXEKILDALMDGK 264 +P D D IN EL DL+ E+ + +L+K + E S EKIL L + Sbjct: 119 NPAEDIDTINTELALADLDSCERAIQRLQKRAKGGDKDAKFE---LSIMEKILPVLENAG 175 Query: 265 PARSVDLPDXEKEAXXHLYLLTMKP 339 RS+DL E +A LT+KP Sbjct: 176 MIRSIDLDKDELQAIKGYNFLTLKP 200 Score = 38.1 bits (87), Expect(2) = 1e-10 Identities = 17/25 (68%), Positives = 20/25 (80%) Frame = +3 Query: 6 IREVDSILQVXRCFEDDDIVHVNGK 80 IRE D+I V RCFE+DDIVHV G+ Sbjct: 93 IRETDAIGHVVRCFENDDIVHVAGQ 117
>ENGD_BUCAP (Q8K9V2) GTP-dependent nucleic acid-binding protein engD| Length = 361 Score = 43.9 bits (102), Expect(2) = 2e-07 Identities = 28/84 (33%), Positives = 42/84 (50%) Frame = +1 Query: 88 PXSDXDVINLELIFCDLEQIEKRLXKLKKSXXXDPQXXXXEGAERSGXEKILDALMDGKP 267 P D D+IN ELI D E EK + KL+K + + + S K LD L Sbjct: 120 PKIDVDIINSELILADFETCEKSILKLQKKLNFNKKEIEEKLVVLS---KCLDHLKKFLM 176 Query: 268 ARSVDLPDXEKEAXXHLYLLTMKP 339 ++++L + EK+ +L LT+KP Sbjct: 177 LKTLELDENEKKIISYLRFLTLKP 200 Score = 28.9 bits (63), Expect(2) = 2e-07 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = +3 Query: 6 IREVDSILQVXRCFEDDDIVHV 71 IR+ +I V RCF+DD++ H+ Sbjct: 93 IRDTHAIAHVVRCFKDDNVSHI 114
>ENGD_BUCAI (P57288) GTP-dependent nucleic acid-binding protein engD| Length = 361 Score = 39.7 bits (91), Expect(2) = 5e-07 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Frame = +1 Query: 88 PXSDXDVINLELIFCDLEQIEKRLXKLKKSXXXDPQXXXXEGAER-SGXEKILDALMDGK 264 P D D+IN ELI D + EK + KL+K + E E+ + +K L+ L Sbjct: 120 PIKDIDIINSELILSDFDLCEKTILKLQKKTLLKNK----ETQEKINTLKKCLNHLKQFF 175 Query: 265 PARSVDLPDXEKEAXXHLYLLTMKP 339 ++++L EK+ +L LT+KP Sbjct: 176 MLKTLNLNKTEKQLISYLRFLTLKP 200 Score = 31.6 bits (70), Expect(2) = 5e-07 Identities = 12/22 (54%), Positives = 17/22 (77%) Frame = +3 Query: 6 IREVDSILQVXRCFEDDDIVHV 71 IR+V +I V RCF+DD+I H+ Sbjct: 93 IRDVHAIAHVVRCFKDDNITHI 114
>YBN5_YEAST (P38219) Putative GTP-binding protein YBR025C| Length = 394 Score = 38.1 bits (87), Expect(2) = 6e-07 Identities = 16/24 (66%), Positives = 19/24 (79%) Frame = +3 Query: 6 IREVDSILQVXRCFEDDDIVHVNG 77 IR VDSI QV RCF+D +I+HV G Sbjct: 114 IRSVDSIYQVVRCFDDAEIIHVEG 137 Score = 32.7 bits (73), Expect(2) = 6e-07 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Frame = +1 Query: 85 DPXSDXDVINLELIFCDLEQIEKRLXKLKKSXXXDPQX--XXXEGAERSGXEKILDALMD 258 DP D ++IN EL D+E +K L +K Q + E KI+ L Sbjct: 140 DPVRDLEIINQELRLKDIEFAQKALEGAEKIAKRGGQSLEVKQKKEEMDLITKIIKLLES 199 Query: 259 GKPARSVDLPDXEKEAXXHLYLLTMKP 339 G+ + E E ++LLT KP Sbjct: 200 GQRVANHSWTSKEVEIINSMFLLTAKP 226
>Y024_MYCGE (P47270) Probable GTP-binding protein MG024| Length = 367 Score = 35.4 bits (80), Expect(2) = 2e-06 Identities = 16/23 (69%), Positives = 17/23 (73%) Frame = +3 Query: 6 IREVDSILQVXRCFEDDDIVHVN 74 IREVD I V RCF+D IVHVN Sbjct: 93 IREVDLICHVVRCFQDKKIVHVN 115 Score = 33.9 bits (76), Expect(2) = 2e-06 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 1/86 (1%) Frame = +1 Query: 85 DPXSDXDVINLELIFCDLEQIEKRLXKLKKSXXXDPQXXXXEGAERSGXEKILDALMDGK 264 DP D ++I ELI D E I R+ KLK+ + E E +L+ L G+ Sbjct: 119 DPVFDFEIIVNELIQADFELITNRIGKLKRKAESGDKIAKEEFVL---LEIVLNGLKQGQ 175 Query: 265 -PARSVDLPDXEKEAXXHLYLLTMKP 339 P ++ L + E + L LLT KP Sbjct: 176 MPIQT--LSESELKTIKSLNLLTAKP 199
>ENGD_BUCBP (Q89AR6) GTP-dependent nucleic acid-binding protein engD| Length = 362 Score = 39.3 bits (90), Expect(2) = 2e-05 Identities = 27/85 (31%), Positives = 42/85 (49%) Frame = +1 Query: 85 DPXSDXDVINLELIFCDLEQIEKRLXKLKKSXXXDPQXXXXEGAERSGXEKILDALMDGK 264 DP D +INLELI D+E + R+ KL+ + + E +K + L K Sbjct: 119 DPVRDVQIINLELILSDIEVCKNRMCKLEINKLSHNKQV---NKELLILKKCVYHLEKSK 175 Query: 265 PARSVDLPDXEKEAXXHLYLLTMKP 339 RS++L + E +L L+T+KP Sbjct: 176 SLRSLNLTEEEIFVINYLRLITLKP 200 Score = 26.6 bits (57), Expect(2) = 2e-05 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = +3 Query: 6 IREVDSILQVXRCFEDDDIVHVNG 77 IR+ + I+ + RCFE+ + H+ G Sbjct: 93 IRDTNVIMHIVRCFENRYVTHIYG 116
>Y026_MYCPN (P75088) Probable GTP-binding protein MG024 homolog (B01_orf362)| Length = 362 Score = 35.8 bits (81), Expect(2) = 6e-05 Identities = 16/25 (64%), Positives = 18/25 (72%) Frame = +3 Query: 6 IREVDSILQVXRCFEDDDIVHVNGK 80 IREVD I V RC+ED IVHVN + Sbjct: 93 IREVDLICHVVRCYEDKKIVHVNNQ 117 Score = 28.1 bits (61), Expect(2) = 6e-05 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +1 Query: 85 DPXSDXDVINLELIFCDLEQIEKRLXKLKK 174 DP D ++I ELI D+E + R+ K+K+ Sbjct: 119 DPVFDFEIIVNELIQADIEVVNTRIGKIKR 148
>YCHF_CAEEL (P91917) Putative GTP-binding protein W08E3.3| Length = 395 Score = 28.1 bits (61), Expect(2) = 0.018 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = +3 Query: 18 DSILQVXRCFEDDDIVHVNGK 80 D++ + R F+DDD+ HV G+ Sbjct: 117 DALFHLCRAFDDDDVTHVEGE 137 Score = 27.3 bits (59), Expect(2) = 0.018 Identities = 23/85 (27%), Positives = 35/85 (41%) Frame = +1 Query: 85 DPXSDXDVINLELIFCDLEQIEKRLXKLKKSXXXDPQXXXXEGAERSGXEKILDALMDGK 264 DP D ++I+ EL DL+ I+ L K++K + E ++ L + K Sbjct: 139 DPVRDLEIISNELFAKDLQFIDGPLDKVEKLFTR--ANDKTKKIEYDTLVRVKKCLEEKK 196 Query: 265 PARSVDLPDXEKEAXXHLYLLTMKP 339 P R + E E LT KP Sbjct: 197 PVRQELWNEKEIEILNKHLFLTAKP 221
>PTD4_MOUSE (Q9CZ30) Putative GTP-binding protein PTD004 homolog| Length = 396 Score = 30.8 bits (68), Expect = 0.87 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +3 Query: 6 IREVDSILQVXRCFEDDDIVHVNG 77 I D I + R FEDDDI HV G Sbjct: 114 ISACDGIFHLTRAFEDDDITHVEG 137
>PTD4_HUMAN (Q9NTK5) Putative GTP-binding protein PTD004| Length = 396 Score = 30.8 bits (68), Expect = 0.87 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +3 Query: 6 IREVDSILQVXRCFEDDDIVHVNG 77 I D I + R FEDDDI HV G Sbjct: 114 ISACDGIFHLTRAFEDDDITHVEG 137
>CERK1_MOUSE (Q8K4Q7) Ceramide kinase (EC 2.7.1.138) (Acylsphingosine kinase)| (mCERK) Length = 531 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 248 HLWMESLQDLLICLTXRKKLYXIFI 322 HLW+++L+ LL LT R K +FI Sbjct: 113 HLWLQTLRGLLESLTSRPKHLLVFI 137
>CERK1_HUMAN (Q8TCT0) Ceramide kinase (EC 2.7.1.138) (Acylsphingosine kinase)| (hCERK) (Lipid kinase 4) (LK4) Length = 537 Score = 28.1 bits (61), Expect = 5.7 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +2 Query: 248 HLWMESLQDLLICLTXRKKLYXIFI 322 HLW+++L+++L LT R K +FI Sbjct: 113 HLWLQTLREMLEKLTSRPKHLLVFI 137 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,474,215 Number of Sequences: 219361 Number of extensions: 435216 Number of successful extensions: 1095 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1074 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1091 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
