| Clone Name | bags10o08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478301.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1267 Score = 511 bits (258), Expect = e-142 Identities = 432/490 (88%) Strand = Plus / Plus Query: 118 tgttcccagggatggaccttaccaaaatggaccctccaacacttaccctccttggagcag 177 ||||||| |||||||| ||||| |||||||| |||| || ||||||||||||||||||| Sbjct: 104 tgttccctgggatggatcttacgaaaatggatgctcctactcttaccctccttggagcag 163 Query: 178 cctgttgtgtaatgttatccatgcatttcacagtgcagttggtatcacaacatcttttct 237 |||| ||||||||| |||| |||||||| ||||| |||||||| || || |||||||||| Sbjct: 164 cctgctgtgtaatgctatcgatgcattttacagtacagttggtgtcgcagcatcttttct 223 Query: 238 attggaaaaatcccaaagagcagaaggctatactcatcattgtgctaatggctccactct 297 ||||||| |||||||| ||||||||||||||||| || || || || |||||||| | | Sbjct: 224 attggaagaatcccaaggagcagaaggctatacttattatcgttctcatggctcccttat 283 Query: 298 atgctataacttcctttgttggccttctggatattaagggaagcaaaacgttttttacat 357 ||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||| || | Sbjct: 284 atgctataaattcctttgttggtcttctggatatcaagggaagcaaaacatttttcactt 343 Query: 358 gcttggagtctgttaaaggatgctatgaggcactggttattgctaagtttctggcattga 417 |||||| |||| |||| |||||| |||||||||| ||||||||||||| ||||| ||| Sbjct: 344 tcttggatgctgtcaaagaatgctacgaggcactggctattgctaagtttatggcactga 403 Query: 418 tgtacagctacttgaatatatctattagcaaaaacattgtacctgatgaaatcaaaggga 477 |||||||||| ||||||||||||||||| || ||||| || |||||||| |||||||||| Sbjct: 404 tgtacagctatttgaatatatctattagtaagaacatagttcctgatgagatcaaaggga 463 Query: 478 gggctcttcatcattctttccctgtctctcttttcctgccccgcaatgttcggttggagc 537 ||| ||||||||||| |||||||| || ||||||||||||||||||||||| ||||||| Sbjct: 464 gggtgcttcatcattccttccctgtttcccttttcctgccccgcaatgttcgattggagc 523 Query: 538 acaagacactaaagcttctgaagtactggacctggcaatttgttgttgttaggcctgtat 597 | || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 524 ataaaacactgaagcttctgaagtactggacctggcaatttgttgttgttaggcccatat 583 Query: 598 gctccattct 607 || ||||||| Sbjct: 584 gcgccattct 593
>ref|XM_507365.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0062D12.107 mRNA Length = 1292 Score = 511 bits (258), Expect = e-142 Identities = 432/490 (88%) Strand = Plus / Plus Query: 118 tgttcccagggatggaccttaccaaaatggaccctccaacacttaccctccttggagcag 177 ||||||| |||||||| ||||| |||||||| |||| || ||||||||||||||||||| Sbjct: 129 tgttccctgggatggatcttacgaaaatggatgctcctactcttaccctccttggagcag 188 Query: 178 cctgttgtgtaatgttatccatgcatttcacagtgcagttggtatcacaacatcttttct 237 |||| ||||||||| |||| |||||||| ||||| |||||||| || || |||||||||| Sbjct: 189 cctgctgtgtaatgctatcgatgcattttacagtacagttggtgtcgcagcatcttttct 248 Query: 238 attggaaaaatcccaaagagcagaaggctatactcatcattgtgctaatggctccactct 297 ||||||| |||||||| ||||||||||||||||| || || || || |||||||| | | Sbjct: 249 attggaagaatcccaaggagcagaaggctatacttattatcgttctcatggctcccttat 308 Query: 298 atgctataacttcctttgttggccttctggatattaagggaagcaaaacgttttttacat 357 ||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||| || | Sbjct: 309 atgctataaattcctttgttggtcttctggatatcaagggaagcaaaacatttttcactt 368 Query: 358 gcttggagtctgttaaaggatgctatgaggcactggttattgctaagtttctggcattga 417 |||||| |||| |||| |||||| |||||||||| ||||||||||||| ||||| ||| Sbjct: 369 tcttggatgctgtcaaagaatgctacgaggcactggctattgctaagtttatggcactga 428 Query: 418 tgtacagctacttgaatatatctattagcaaaaacattgtacctgatgaaatcaaaggga 477 |||||||||| ||||||||||||||||| || ||||| || |||||||| |||||||||| Sbjct: 429 tgtacagctatttgaatatatctattagtaagaacatagttcctgatgagatcaaaggga 488 Query: 478 gggctcttcatcattctttccctgtctctcttttcctgccccgcaatgttcggttggagc 537 ||| ||||||||||| |||||||| || ||||||||||||||||||||||| ||||||| Sbjct: 489 gggtgcttcatcattccttccctgtttcccttttcctgccccgcaatgttcgattggagc 548 Query: 538 acaagacactaaagcttctgaagtactggacctggcaatttgttgttgttaggcctgtat 597 | || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 549 ataaaacactgaagcttctgaagtactggacctggcaatttgttgttgttaggcccatat 608 Query: 598 gctccattct 607 || ||||||| Sbjct: 609 gcgccattct 618
>ref|XM_506358.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0062D12.107 mRNA Length = 1292 Score = 511 bits (258), Expect = e-142 Identities = 432/490 (88%) Strand = Plus / Plus Query: 118 tgttcccagggatggaccttaccaaaatggaccctccaacacttaccctccttggagcag 177 ||||||| |||||||| ||||| |||||||| |||| || ||||||||||||||||||| Sbjct: 129 tgttccctgggatggatcttacgaaaatggatgctcctactcttaccctccttggagcag 188 Query: 178 cctgttgtgtaatgttatccatgcatttcacagtgcagttggtatcacaacatcttttct 237 |||| ||||||||| |||| |||||||| ||||| |||||||| || || |||||||||| Sbjct: 189 cctgctgtgtaatgctatcgatgcattttacagtacagttggtgtcgcagcatcttttct 248 Query: 238 attggaaaaatcccaaagagcagaaggctatactcatcattgtgctaatggctccactct 297 ||||||| |||||||| ||||||||||||||||| || || || || |||||||| | | Sbjct: 249 attggaagaatcccaaggagcagaaggctatacttattatcgttctcatggctcccttat 308 Query: 298 atgctataacttcctttgttggccttctggatattaagggaagcaaaacgttttttacat 357 ||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||| || | Sbjct: 309 atgctataaattcctttgttggtcttctggatatcaagggaagcaaaacatttttcactt 368 Query: 358 gcttggagtctgttaaaggatgctatgaggcactggttattgctaagtttctggcattga 417 |||||| |||| |||| |||||| |||||||||| ||||||||||||| ||||| ||| Sbjct: 369 tcttggatgctgtcaaagaatgctacgaggcactggctattgctaagtttatggcactga 428 Query: 418 tgtacagctacttgaatatatctattagcaaaaacattgtacctgatgaaatcaaaggga 477 |||||||||| ||||||||||||||||| || ||||| || |||||||| |||||||||| Sbjct: 429 tgtacagctatttgaatatatctattagtaagaacatagttcctgatgagatcaaaggga 488 Query: 478 gggctcttcatcattctttccctgtctctcttttcctgccccgcaatgttcggttggagc 537 ||| ||||||||||| |||||||| || ||||||||||||||||||||||| ||||||| Sbjct: 489 gggtgcttcatcattccttccctgtttcccttttcctgccccgcaatgttcgattggagc 548 Query: 538 acaagacactaaagcttctgaagtactggacctggcaatttgttgttgttaggcctgtat 597 | || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 549 ataaaacactgaagcttctgaagtactggacctggcaatttgttgttgttaggcccatat 608 Query: 598 gctccattct 607 || ||||||| Sbjct: 609 gcgccattct 618
>dbj|AK104035.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-G11, full insert sequence Length = 1268 Score = 511 bits (258), Expect = e-142 Identities = 432/490 (88%) Strand = Plus / Plus Query: 118 tgttcccagggatggaccttaccaaaatggaccctccaacacttaccctccttggagcag 177 ||||||| |||||||| ||||| |||||||| |||| || ||||||||||||||||||| Sbjct: 104 tgttccctgggatggatcttacgaaaatggatgctcctactcttaccctccttggagcag 163 Query: 178 cctgttgtgtaatgttatccatgcatttcacagtgcagttggtatcacaacatcttttct 237 |||| ||||||||| |||| |||||||| ||||| |||||||| || || |||||||||| Sbjct: 164 cctgctgtgtaatgctatcgatgcattttacagtacagttggtgtcgcagcatcttttct 223 Query: 238 attggaaaaatcccaaagagcagaaggctatactcatcattgtgctaatggctccactct 297 ||||||| |||||||| ||||||||||||||||| || || || || |||||||| | | Sbjct: 224 attggaagaatcccaaggagcagaaggctatacttattatcgttctcatggctcccttat 283 Query: 298 atgctataacttcctttgttggccttctggatattaagggaagcaaaacgttttttacat 357 ||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||| || | Sbjct: 284 atgctataaattcctttgttggtcttctggatatcaagggaagcaaaacatttttcactt 343 Query: 358 gcttggagtctgttaaaggatgctatgaggcactggttattgctaagtttctggcattga 417 |||||| |||| |||| |||||| |||||||||| ||||||||||||| ||||| ||| Sbjct: 344 tcttggatgctgtcaaagaatgctacgaggcactggctattgctaagtttatggcactga 403 Query: 418 tgtacagctacttgaatatatctattagcaaaaacattgtacctgatgaaatcaaaggga 477 |||||||||| ||||||||||||||||| || ||||| || |||||||| |||||||||| Sbjct: 404 tgtacagctatttgaatatatctattagtaagaacatagttcctgatgagatcaaaggga 463 Query: 478 gggctcttcatcattctttccctgtctctcttttcctgccccgcaatgttcggttggagc 537 ||| ||||||||||| |||||||| || ||||||||||||||||||||||| ||||||| Sbjct: 464 gggtgcttcatcattccttccctgtttcccttttcctgccccgcaatgttcgattggagc 523 Query: 538 acaagacactaaagcttctgaagtactggacctggcaatttgttgttgttaggcctgtat 597 | || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 524 ataaaacactgaagcttctgaagtactggacctggcaatttgttgttgttaggcccatat 583 Query: 598 gctccattct 607 || ||||||| Sbjct: 584 gcgccattct 593
>dbj|AK103102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118N22, full insert sequence Length = 1292 Score = 511 bits (258), Expect = e-142 Identities = 432/490 (88%) Strand = Plus / Plus Query: 118 tgttcccagggatggaccttaccaaaatggaccctccaacacttaccctccttggagcag 177 ||||||| |||||||| ||||| |||||||| |||| || ||||||||||||||||||| Sbjct: 129 tgttccctgggatggatcttacgaaaatggatgctcctactcttaccctccttggagcag 188 Query: 178 cctgttgtgtaatgttatccatgcatttcacagtgcagttggtatcacaacatcttttct 237 |||| ||||||||| |||| |||||||| ||||| |||||||| || || |||||||||| Sbjct: 189 cctgctgtgtaatgctatcgatgcattttacagtacagttggtgtcgcagcatcttttct 248 Query: 238 attggaaaaatcccaaagagcagaaggctatactcatcattgtgctaatggctccactct 297 ||||||| |||||||| ||||||||||||||||| || || || || |||||||| | | Sbjct: 249 attggaagaatcccaaggagcagaaggctatacttattatcgttctcatggctcccttat 308 Query: 298 atgctataacttcctttgttggccttctggatattaagggaagcaaaacgttttttacat 357 ||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||| || | Sbjct: 309 atgctataaattcctttgttggtcttctggatatcaagggaagcaaaacatttttcactt 368 Query: 358 gcttggagtctgttaaaggatgctatgaggcactggttattgctaagtttctggcattga 417 |||||| |||| |||| |||||| |||||||||| ||||||||||||| ||||| ||| Sbjct: 369 tcttggatgctgtcaaagaatgctacgaggcactggctattgctaagtttatggcactga 428 Query: 418 tgtacagctacttgaatatatctattagcaaaaacattgtacctgatgaaatcaaaggga 477 |||||||||| ||||||||||||||||| || ||||| || |||||||| |||||||||| Sbjct: 429 tgtacagctatttgaatatatctattagtaagaacatagttcctgatgagatcaaaggga 488 Query: 478 gggctcttcatcattctttccctgtctctcttttcctgccccgcaatgttcggttggagc 537 ||| ||||||||||| |||||||| || ||||||||||||||||||||||| ||||||| Sbjct: 489 gggtgcttcatcattccttccctgtttcccttttcctgccccgcaatgttcgattggagc 548 Query: 538 acaagacactaaagcttctgaagtactggacctggcaatttgttgttgttaggcctgtat 597 | || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 549 ataaaacactgaagcttctgaagtactggacctggcaatttgttgttgttaggcccatat 608 Query: 598 gctccattct 607 || ||||||| Sbjct: 609 gcgccattct 618
>dbj|AK068687.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160E09, full insert sequence Length = 1292 Score = 511 bits (258), Expect = e-142 Identities = 432/490 (88%) Strand = Plus / Plus Query: 118 tgttcccagggatggaccttaccaaaatggaccctccaacacttaccctccttggagcag 177 ||||||| |||||||| ||||| |||||||| |||| || ||||||||||||||||||| Sbjct: 129 tgttccctgggatggatcttacgaaaatggatgctcctactcttaccctccttggagcag 188 Query: 178 cctgttgtgtaatgttatccatgcatttcacagtgcagttggtatcacaacatcttttct 237 |||| ||||||||| |||| |||||||| ||||| |||||||| || || |||||||||| Sbjct: 189 cctgctgtgtaatgctatcgatgcattttacagtacagttggtgtcgcagcatcttttct 248 Query: 238 attggaaaaatcccaaagagcagaaggctatactcatcattgtgctaatggctccactct 297 ||||||| |||||||| ||||||||||||||||| || || || || |||||||| | | Sbjct: 249 attggaagaatcccaaggagcagaaggctatacttattatcgttctcatggctcccttat 308 Query: 298 atgctataacttcctttgttggccttctggatattaagggaagcaaaacgttttttacat 357 ||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||| || | Sbjct: 309 atgctataaattcctttgttggtcttctggatatcaagggaagcaaaacatttttcactt 368 Query: 358 gcttggagtctgttaaaggatgctatgaggcactggttattgctaagtttctggcattga 417 |||||| |||| |||| |||||| |||||||||| ||||||||||||| ||||| ||| Sbjct: 369 tcttggatgctgtcaaagaatgctacgaggcactggctattgctaagtttatggcactga 428 Query: 418 tgtacagctacttgaatatatctattagcaaaaacattgtacctgatgaaatcaaaggga 477 |||||||||| ||||||||||||||||| || ||||| || |||||||| |||||||||| Sbjct: 429 tgtacagctatttgaatatatctattagtaagaacatagttcctgatgagatcaaaggga 488 Query: 478 gggctcttcatcattctttccctgtctctcttttcctgccccgcaatgttcggttggagc 537 ||| ||||||||||| |||||||| || ||||||||||||||||||||||| ||||||| Sbjct: 489 gggtgcttcatcattccttccctgtttcccttttcctgccccgcaatgttcgattggagc 548 Query: 538 acaagacactaaagcttctgaagtactggacctggcaatttgttgttgttaggcctgtat 597 | || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 549 ataaaacactgaagcttctgaagtactggacctggcaatttgttgttgttaggcccatat 608 Query: 598 gctccattct 607 || ||||||| Sbjct: 609 gcgccattct 618
>gb|AY596590.1| Saccharum officinarum clone SCJFLR1013H05, complete sequence Length = 1413 Score = 509 bits (257), Expect = e-141 Identities = 425/481 (88%) Strand = Plus / Minus Query: 141 aaaatggaccctccaacacttaccctccttggagcagcctgttgtgtaatgttatccatg 200 |||||||| || |||| || ||||||||||| ||||| ||||||||||| | | ||| Sbjct: 1223 aaaatggatcccgcaactctgaccctccttggggcagctggttgtgtaatgctgactatg 1164 Query: 201 catttcacagtgcagttggtatcacaacatcttttctattggaaaaatcccaaagagcag 260 |||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||| |||||| Sbjct: 1163 catttcactgtgcaattggtgtcacaacatctcttctattggaaaaaccccaaggagcag 1104 Query: 261 aaggctatactcatcattgtgctaatggctccactctatgctataacttcctttgttggc 320 || |||||||| || |||||||||||||||||||| |||||||| ||||||| || || Sbjct: 1103 aaagctatacttattattgtgctaatggctccactatatgctatctcttccttcgtgggt 1044 Query: 321 cttctggatattaagggaagcaaaacgttttttacatgcttggagtctgttaaaggatgc 380 ||||| ||||| |||| ||||| || ||||| |||| |||||| ||||||||| |||| Sbjct: 1043 cttcttgatatccagggtagcaagacatttttcacattcttggatgctgttaaagaatgc 984 Query: 381 tatgaggcactggttattgctaagtttctggcattgatgtacagctacttgaatatatct 440 |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 983 tatgaggcactggtgattgctaagtttatggcattgatgtacagctacttgaatatatcc 924 Query: 441 attagcaaaaacattgtacctgatgaaatcaaagggagggctcttcatcattctttccct 500 || ||||| ||||| || |||||||||||||||||||||| ||||||||||| |||||| Sbjct: 923 atcagcaagaacatagtccctgatgaaatcaaagggagggagcttcatcattccttccct 864 Query: 501 gtctctcttttcctgccccgcaatgttcggttggagcacaagacactaaagcttctgaag 560 || ||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| Sbjct: 863 gtttctcttttcctgccccgcaatgtccgattggagcacaagacattaaagcttctgaag 804 Query: 561 tactggacctggcaatttgttgttgttaggcctgtatgctccattctgattatcgcactt 620 || ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| Sbjct: 803 tattggacctggcaatttgttgttgttaggccagtatgttccattctgattattgcactt 744 Query: 621 c 621 | Sbjct: 743 c 743
>gb|AY103628.1| Zea mays PCO109231 mRNA sequence Length = 1907 Score = 464 bits (234), Expect = e-127 Identities = 402/458 (87%) Strand = Plus / Plus Query: 162 accctccttggagcagcctgttgtgtaatgttatccatgcatttcacagtgcagttggta 221 ||||||||||| ||||| ||||||||||| | | ||||||||||| ||||| ||||| Sbjct: 250 accctccttggggcagctggttgtgtaatgctgactatgcatttcactgtgcaattggtg 309 Query: 222 tcacaacatcttttctattggaaaaatcccaaagagcagaaggctatactcatcattgtg 281 ||||||||||| |||||||||||||| ||||| |||||||| || ||||| || |||||| Sbjct: 310 tcacaacatctcttctattggaaaaaccccaaggagcagaaagccatacttattattgtg 369 Query: 282 ctaatggctccactctatgctataacttcctttgttggccttctggatattaagggaagc 341 || ||||||||||| || ||||| ||||||| || || ||||| ||||| |||| ||| Sbjct: 370 ctgatggctccactatacgctatctcttccttcgtgggtcttcttgatatccagggtagc 429 Query: 342 aaaacgttttttacatgcttggagtctgttaaaggatgctatgaggcactggttattgct 401 || || ||||| |||| ||| || ||||||||| |||||||||||||||||| |||||| Sbjct: 430 aagacatttttcacattcttagatgctgttaaagaatgctatgaggcactggtgattgct 489 Query: 402 aagtttctggcattgatgtacagctacttgaatatatctattagcaaaaacattgtacct 461 |||||| |||||||||||||||||||||||||||||||||| ||||| ||||| || ||| Sbjct: 490 aagtttatggcattgatgtacagctacttgaatatatctatcagcaagaacatagtccct 549 Query: 462 gatgaaatcaaagggagggctcttcatcattctttccctgtctctcttttcctgccccgc 521 ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| Sbjct: 550 gatgaaatcaaagggagggtgcttcatcattccttccctgtttctcttttcctgccccgc 609 Query: 522 aatgttcggttggagcacaagacactaaagcttctgaagtactggacctggcaatttgtt 581 ||||| || ||||||||||||||| | |||||||||||||| |||||||||||||||||| Sbjct: 610 aatgtccgattggagcacaagacattgaagcttctgaagtattggacctggcaatttgtt 669 Query: 582 gttgttaggcctgtatgctccattctgattatcgcact 619 |||||||||| ||||| |||||||||||||| ||||| Sbjct: 670 attgttaggccagtatgttccattctgattattgcact 707
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 256 bits (129), Expect = 8e-65 Identities = 240/277 (86%) Strand = Plus / Minus Query: 118 tgttcccagggatggaccttaccaaaatggaccctccaacacttaccctccttggagcag 177 ||||||| |||||||| ||||| |||||||| |||| || ||||||||||||||||||| Sbjct: 19110293 tgttccctgggatggatcttacgaaaatggatgctcctactcttaccctccttggagcag 19110234 Query: 178 cctgttgtgtaatgttatccatgcatttcacagtgcagttggtatcacaacatcttttct 237 |||| ||||||||| |||| |||||||| ||||| |||||||| || || |||||||||| Sbjct: 19110233 cctgctgtgtaatgctatcgatgcattttacagtacagttggtgtcgcagcatcttttct 19110174 Query: 238 attggaaaaatcccaaagagcagaaggctatactcatcattgtgctaatggctccactct 297 ||||||| |||||||| ||||||||||||||||| || || || || |||||||| | | Sbjct: 19110173 attggaagaatcccaaggagcagaaggctatacttattatcgttctcatggctcccttat 19110114 Query: 298 atgctataacttcctttgttggccttctggatattaagggaagcaaaacgttttttacat 357 ||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||| || | Sbjct: 19110113 atgctataaattcctttgttggtcttctggatatcaagggaagcaaaacatttttcactt 19110054 Query: 358 gcttggagtctgttaaaggatgctatgaggcactggt 394 |||||| |||| |||| |||||| ||||||||||| Sbjct: 19110053 tcttggatgctgtcaaagaatgctacgaggcactggt 19110017 Score = 137 bits (69), Expect = 5e-29 Identities = 108/121 (89%) Strand = Plus / Minus Query: 395 tattgctaagtttctggcattgatgtacagctacttgaatatatctattagcaaaaacat 454 ||||||||||||| ||||| ||||||||||||| ||||||||||||||||| || ||||| Sbjct: 19109937 tattgctaagtttatggcactgatgtacagctatttgaatatatctattagtaagaacat 19109878 Query: 455 tgtacctgatgaaatcaaagggagggctcttcatcattctttccctgtctctcttttcct 514 || |||||||| ||||||||||||| ||||||||||| |||||||| || |||||||| Sbjct: 19109877 agttcctgatgagatcaaagggagggtgcttcatcattccttccctgtttcccttttcct 19109818 Query: 515 g 515 | Sbjct: 19109817 g 19109817 Score = 129 bits (65), Expect = 1e-26 Identities = 86/93 (92%) Strand = Plus / Minus Query: 515 gccccgcaatgttcggttggagcacaagacactaaagcttctgaagtactggacctggca 574 ||||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||| Sbjct: 19109148 gccccgcaatgttcgattggagcataaaacactgaagcttctgaagtactggacctggca 19109089 Query: 575 atttgttgttgttaggcctgtatgctccattct 607 |||||||||||||||||| ||||| ||||||| Sbjct: 19109088 atttgttgttgttaggcccatatgcgccattct 19109056
>dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0062D12 Length = 155408 Score = 256 bits (129), Expect = 8e-65 Identities = 240/277 (86%) Strand = Plus / Minus Query: 118 tgttcccagggatggaccttaccaaaatggaccctccaacacttaccctccttggagcag 177 ||||||| |||||||| ||||| |||||||| |||| || ||||||||||||||||||| Sbjct: 33688 tgttccctgggatggatcttacgaaaatggatgctcctactcttaccctccttggagcag 33629 Query: 178 cctgttgtgtaatgttatccatgcatttcacagtgcagttggtatcacaacatcttttct 237 |||| ||||||||| |||| |||||||| ||||| |||||||| || || |||||||||| Sbjct: 33628 cctgctgtgtaatgctatcgatgcattttacagtacagttggtgtcgcagcatcttttct 33569 Query: 238 attggaaaaatcccaaagagcagaaggctatactcatcattgtgctaatggctccactct 297 ||||||| |||||||| ||||||||||||||||| || || || || |||||||| | | Sbjct: 33568 attggaagaatcccaaggagcagaaggctatacttattatcgttctcatggctcccttat 33509 Query: 298 atgctataacttcctttgttggccttctggatattaagggaagcaaaacgttttttacat 357 ||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||| || | Sbjct: 33508 atgctataaattcctttgttggtcttctggatatcaagggaagcaaaacatttttcactt 33449 Query: 358 gcttggagtctgttaaaggatgctatgaggcactggt 394 |||||| |||| |||| |||||| ||||||||||| Sbjct: 33448 tcttggatgctgtcaaagaatgctacgaggcactggt 33412 Score = 137 bits (69), Expect = 5e-29 Identities = 108/121 (89%) Strand = Plus / Minus Query: 395 tattgctaagtttctggcattgatgtacagctacttgaatatatctattagcaaaaacat 454 ||||||||||||| ||||| ||||||||||||| ||||||||||||||||| || ||||| Sbjct: 33332 tattgctaagtttatggcactgatgtacagctatttgaatatatctattagtaagaacat 33273 Query: 455 tgtacctgatgaaatcaaagggagggctcttcatcattctttccctgtctctcttttcct 514 || |||||||| ||||||||||||| ||||||||||| |||||||| || |||||||| Sbjct: 33272 agttcctgatgagatcaaagggagggtgcttcatcattccttccctgtttcccttttcct 33213 Query: 515 g 515 | Sbjct: 33212 g 33212 Score = 129 bits (65), Expect = 1e-26 Identities = 86/93 (92%) Strand = Plus / Minus Query: 515 gccccgcaatgttcggttggagcacaagacactaaagcttctgaagtactggacctggca 574 ||||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||| Sbjct: 32543 gccccgcaatgttcgattggagcataaaacactgaagcttctgaagtactggacctggca 32484 Query: 575 atttgttgttgttaggcctgtatgctccattct 607 |||||||||||||||||| ||||| ||||||| Sbjct: 32483 atttgttgttgttaggcccatatgcgccattct 32451
>gb|BT013402.1| Lycopersicon esculentum clone 135714R, mRNA sequence Length = 1163 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Plus Query: 335 gggaagcaaaacgttttttacatgcttggagtctgttaaaggatgctatgaggcactggt 394 |||||||||| | ||||| || | |||||| ||||| |||| ||| ||||| ||| | || Sbjct: 260 gggaagcaaaccctttttcactttcttggaatctgtcaaagaatgttatgaagcaattgt 319 Query: 395 tattgctaagtttctggcattgatgtacagctacttgaatatatctattagcaaaaacat 454 || |||||||| |||| |||||||||| |||||||||||||| || ||||||||||| Sbjct: 320 gatggctaagttcctggggttgatgtacacttacttgaatatatccataagcaaaaacat 379 Query: 455 tgtacctgatgaaat 469 || ||||||||||| Sbjct: 380 agtccctgatgaaat 394 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 549 aagcttctgaagtactggacctggcaatttgttgttgttaggcctgtatgctc 601 |||||||| ||| ||||||| ||||| |||||||| || | ||||||||||| Sbjct: 474 aagcttctcaagaactggacatggcagtttgttgtgattcgccctgtatgctc 526
>ref|NM_118277.3| Arabidopsis thaliana unknown protein AT4G21570 mRNA, complete cds Length = 1286 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 261 aaggctatactcatcattgtgctaatggctcc 292 ||||||||||||||||||||||| |||||||| Sbjct: 300 aaggctatactcatcattgtgcttatggctcc 331 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 409 tggcattgatgtacagctacttgaatatatctattagcaaaaacattgtacctgatgaaa 468 ||||||||||||| || || | || |||||||| |||||||||||| | ||||||| || Sbjct: 448 tggcattgatgtatagttatctaaacatatctatgagcaaaaacattttgcctgatggaa 507 Query: 469 tcaaagg 475 ||||||| Sbjct: 508 tcaaagg 514
>emb|AL161555.2|ATCHRIV55 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55 Length = 194916 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 261 aaggctatactcatcattgtgctaatggctcc 292 ||||||||||||||||||||||| |||||||| Sbjct: 90000 aaggctatactcatcattgtgcttatggctcc 89969 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 409 tggcattgatgtacagctacttgaatatatctattagcaaaaacattgtacctgatgaaa 468 ||||||||||||| || || | || |||||||| |||||||||||| | ||||||| || Sbjct: 89769 tggcattgatgtatagttatctaaacatatctatgagcaaaaacattttgcctgatggaa 89710 Query: 469 tcaaagg 475 ||||||| Sbjct: 89709 tcaaagg 89703
>emb|AL035527.1|ATF17L22 Arabidopsis thaliana DNA chromosome 4, BAC clone F17L22 (ESSAII project) Length = 107702 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 261 aaggctatactcatcattgtgctaatggctcc 292 ||||||||||||||||||||||| |||||||| Sbjct: 3943 aaggctatactcatcattgtgcttatggctcc 3912 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 409 tggcattgatgtacagctacttgaatatatctattagcaaaaacattgtacctgatgaaa 468 ||||||||||||| || || | || |||||||| |||||||||||| | ||||||| || Sbjct: 3712 tggcattgatgtatagttatctaaacatatctatgagcaaaaacattttgcctgatggaa 3653 Query: 469 tcaaagg 475 ||||||| Sbjct: 3652 tcaaagg 3646
>emb|AL022603.1|ATF18E5 Arabidopsis thaliana DNA chromosome 4, BAC clone F18E5 (ESSAII project) Length = 95266 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 261 aaggctatactcatcattgtgctaatggctcc 292 ||||||||||||||||||||||| |||||||| Sbjct: 76992 aaggctatactcatcattgtgcttatggctcc 76961 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 409 tggcattgatgtacagctacttgaatatatctattagcaaaaacattgtacctgatgaaa 468 ||||||||||||| || || | || |||||||| |||||||||||| | ||||||| || Sbjct: 76761 tggcattgatgtatagttatctaaacatatctatgagcaaaaacattttgcctgatggaa 76702 Query: 469 tcaaagg 475 ||||||| Sbjct: 76701 tcaaagg 76695
>gb|AY114568.1| Arabidopsis thaliana putative protein (At4g21570) mRNA, complete cds Length = 916 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 261 aaggctatactcatcattgtgctaatggctcc 292 ||||||||||||||||||||||| |||||||| Sbjct: 136 aaggctatactcatcattgtgcttatggctcc 167 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 409 tggcattgatgtacagctacttgaatatatctattagcaaaaacattgtacctgatgaaa 468 ||||||||||||| || || | || |||||||| |||||||||||| | ||||||| || Sbjct: 284 tggcattgatgtatagttatctaaacatatctatgagcaaaaacattttgcctgatggaa 343 Query: 469 tcaaagg 475 ||||||| Sbjct: 344 tcaaagg 350
>gb|AY092966.1| Arabidopsis thaliana putative protein (At4g21570) mRNA, complete cds Length = 1220 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 261 aaggctatactcatcattgtgctaatggctcc 292 ||||||||||||||||||||||| |||||||| Sbjct: 300 aaggctatactcatcattgtgcttatggctcc 331 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 409 tggcattgatgtacagctacttgaatatatctattagcaaaaacattgtacctgatgaaa 468 ||||||||||||| || || | || |||||||| |||||||||||| | ||||||| || Sbjct: 448 tggcattgatgtatagttatctaaacatatctatgagcaaaaacattttgcctgatggaa 507 Query: 469 tcaaagg 475 ||||||| Sbjct: 508 tcaaagg 514
>emb|BX828223.1|CNS0A3UK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH65ZC03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1327 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 261 aaggctatactcatcattgtgctaatggctcc 292 ||||||||||||||||||||||| |||||||| Sbjct: 388 aaggctatactcatcattgtgcttatggctcc 419 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 409 tggcattgatgtacagctacttgaatatatctattagcaaaaacattgtacctgatgaaa 468 ||||||||||||| || || | || |||||||| |||||||||||| | ||||||| || Sbjct: 536 tggcattgatgtatagttatctaaacatatctatgagcaaaaacattttgcctgatggaa 595 Query: 469 tcaaagg 475 ||||||| Sbjct: 596 tcaaagg 602
>emb|BX841534.1|CNS09YH3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS42ZB06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1133 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 261 aaggctatactcatcattgtgctaatggctcc 292 ||||||||||||||||||||||| |||||||| Sbjct: 269 aaggctatactcatcattgtgcttatggctcc 300 Score = 46.1 bits (23), Expect = 0.14 Identities = 56/67 (83%) Strand = Plus / Plus Query: 409 tggcattgatgtacagctacttgaatatatctattagcaaaaacattgtacctgatgaaa 468 ||||||||||||| || || | || |||||||| ||||||| |||| | ||||||| || Sbjct: 418 tggcattgatgtatagttatctaaacatatctatgagcaaaagcattttgcctgatggaa 477 Query: 469 tcaaagg 475 ||||||| Sbjct: 478 tcaaagg 484
>emb|AL137081.1|ATF9D24 Arabidopsis thaliana DNA chromosome 3, BAC clone F9D24 Length = 105306 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 432 aatatatctattagcaaaaacat 454 ||||||||||||||||||||||| Sbjct: 26979 aatatatctattagcaaaaacat 26957
>gb|AC110510.6| Mus musculus chromosome 1, clone RP24-503F14, complete sequence Length = 198372 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 63 ctggccctcttccttccctccc 84 |||||||||||||||||||||| Sbjct: 64970 ctggccctcttccttccctccc 64949
>gb|AC102874.7| Mus musculus chromosome 1, clone RP24-500O1, complete sequence Length = 166507 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 63 ctggccctcttccttccctccc 84 |||||||||||||||||||||| Sbjct: 151030 ctggccctcttccttccctccc 151009
>emb|BX005397.20| Zebrafish DNA sequence from clone CH211-270B18 in linkage group 21, complete sequence Length = 157225 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 497 ccctgtctctcttttcctgccc 518 |||||||||||||||||||||| Sbjct: 97853 ccctgtctctcttttcctgccc 97874
>ref|NM_100992.1| Arabidopsis thaliana unknown protein AT1G11200 mRNA, complete cds Length = 1150 Score = 42.1 bits (21), Expect = 2.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 377 atgctatgaggcactggttattgctaagtttctggcattgatgta 421 ||||||||||||||| || |||||||| || |||| |||||||| Sbjct: 335 atgctatgaggcacttgtcattgctaaattcttggctttgatgta 379
>gb|AY634311.1| Lycopersicon esculentum cell-wall invertase (Lin6) gene, partial cds Length = 7064 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 223 cacaacatcttttctattggaaaaa 247 |||||| |||||||||||||||||| Sbjct: 6170 cacaacctcttttctattggaaaaa 6146
>gb|AC144509.3| Mus musculus BAC clone RP23-394G5 from chromosome 5, complete sequence Length = 181316 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 491 ttctttccctgtctctcttttcctg 515 |||||||| |||||||||||||||| Sbjct: 116232 ttctttccttgtctctcttttcctg 116256
>emb|X75356.1|CBQPH1 C.burnetii QpH1 plasmid, complete genomic sequence Length = 37329 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 430 tgaatatatctattagcaaaa 450 ||||||||||||||||||||| Sbjct: 6562 tgaatatatctattagcaaaa 6542
>emb|AL844847.6| Zebrafish DNA sequence from clone DKEY-13A21 in linkage group 11 Contains three novel genes, the opn1lw1 gene for opsin 1 (cone pigments), long-wave-sensitive, 1, a gene for novel protein similar to human and rodent member RAS oncogene family RAB7 (RAB7), a gene for novel protein remotely similar to human host cell factor 1 (VP16-accessory protein) (HCFC1), the opn1sw2 gene for opsin 1 (cone pigments), short-wave-sensitive 1, a gene for novel protein similar to human and mouse CpG binding protein (CGBP), a gene for novel protein similar to vertebrate microphthalmia-associated transcription factor (MITF) and zebrafish transcription factor binding to IGHM enhancer 3a (tfe3a), a gene for novel protein similar to human and rodent catechol-O-methyltransferase (COMT), the flj10613l gene for hypothetical protein FLJ10613-like (H. sapiens), a gene for novel protein similar to human and mouse methyl-CpG binding domain protein 1 (MBD1), a gene for novel protein similar to zebrafish red-sensitive opsin (rdops), a gene for novel protein similar to mouse and human host cell factor C1 (VP16-accessory protein) (HCFC1), a gene for novel protein similar to human and rodent metabotropic glutamate receptors (GRM) and two CpG islands, complete sequence Length = 235174 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 ggaaaaatcccaaagagcaga 261 ||||||||||||||||||||| Sbjct: 137653 ggaaaaatcccaaagagcaga 137633
>gb|AE016829.1| Coxiella burnetii strain RSA 493 plasmid pQpH1, complete sequence Length = 37393 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 tgaatatatctattagcaaaa 450 ||||||||||||||||||||| Sbjct: 29739 tgaatatatctattagcaaaa 29759
>gb|AF506004.1| Lycopersicon esculentum cell-wall invertase (Lin8) and cell-wall invertase (Lin6) genes, complete cds Length = 23094 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 223 cacaacatcttttctattggaaaaa 247 |||||| |||||||||||||||||| Sbjct: 14835 cacaacctcttttctattggaaaaa 14811
>gb|AY088077.1| Arabidopsis thaliana clone 40975 mRNA, complete sequence Length = 1149 Score = 42.1 bits (21), Expect = 2.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 377 atgctatgaggcactggttattgctaagtttctggcattgatgta 421 ||||||||||||||| || |||||||| || |||| |||||||| Sbjct: 335 atgctatgaggcacttgtcattgctaaattcttggctttgatgta 379
>emb|X85964.1|CBDNA9ORF C.burnetii ORF 611, ORF 206 & unknown ORF Length = 7465 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 430 tgaatatatctattagcaaaa 450 ||||||||||||||||||||| Sbjct: 2255 tgaatatatctattagcaaaa 2235
>gb|AF131076.1|AF131076 Coxiella burnetii strain R1140 plasmid QpDV, complete sequence Length = 32601 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 430 tgaatatatctattagcaaaa 450 ||||||||||||||||||||| Sbjct: 6564 tgaatatatctattagcaaaa 6544
>gb|BC074562.1| Xenopus tropicalis baculoviral IAP repeat-containing 2, mRNA (cDNA clone MGC:69222 IMAGE:5307662), complete cds Length = 2159 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gctggccctcttccttccct 81 |||||||||||||||||||| Sbjct: 149 gctggccctcttccttccct 168
>gb|AC004748.1| Homo sapiens chromosome 5, BAC clone 7h13 (LBNL H100), complete sequence Length = 110804 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 568 cctggcaatttgttgttgtt 587 |||||||||||||||||||| Sbjct: 56479 cctggcaatttgttgttgtt 56460
>gb|AF077537.1| Caenorhabditis elegans cosmid F16G10, complete sequence Length = 41718 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 4 agactcgccaaatttgctgcagatctct 31 |||||||||||||||| ||| ||||||| Sbjct: 32879 agactcgccaaatttgttgctgatctct 32852
>ref|XM_865722.1| PREDICTED: Bos taurus hypothetical protein LOC614279 (LOC614279), mRNA Length = 2106 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 agcagcctgttgtgtaatgt 192 |||||||||||||||||||| Sbjct: 1433 agcagcctgttgtgtaatgt 1452
>gb|AC121835.2| Mus musculus BAC clone RP24-72L18 from 8, complete sequence Length = 225065 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 226 aacatcttttctattggaaaaatc 249 |||||||||| ||||||||||||| Sbjct: 39592 aacatcttttgtattggaaaaatc 39569
>emb|BX248309.8| Human DNA sequence from clone DASS-241N2 on chromosome 6, complete sequence Length = 29588 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 attggaaaaatcccaaagag 257 |||||||||||||||||||| Sbjct: 28239 attggaaaaatcccaaagag 28258
>emb|AL844527.6| Human DNA sequence from clone DAQB-314F24 on chromosome 6 Contains the 5' end of the COL11A2 gene for collagen type XI alpha 2, the RXRB gene for retinoid X receptor, beta, the SLC39A7 gene for solute carrier family 39 (zinc transporter), member 7, the HSD17B8 gene for hydroxysteroid (17-beta) dehydrogenase 8, the RING1 gene for ring finger protein 1, the ZNF314P pseudogene for zinc finger protein 314, the HTATSF1P pseudogene for HIV TAT specific factor 1, the HCG25 gene for HLA complex group 25, the VPS52 gene for vacuolar protein sorting 52 (yeast), the RPS18 gene for ribosomal protein S18, the B3GALT4 gene for UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4, the 3'end of the C6orf11 gene for chromosome 6 open reading frame 11, and 7 CpG islands, complete sequence Length = 109523 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 attggaaaaatcccaaagag 257 |||||||||||||||||||| Sbjct: 18971 attggaaaaatcccaaagag 18990
>emb|AL662824.9| Human DNA sequence from clone XXbac-22I16 on chromosome 6 contains the HLA-DPA1 gene for major histocompatibility complex, class II, DP alpha 1, the HLA-DPB1 gene for major histocompatibility complex, class II, DP beta 1, a ribosomal protein L32 (RPL32) pseudogene, the HLA-DPA2 pseudogene for major histocompatibility complex, class II, DP alpha 2, a pseudogene similar to part of collagens, a novel protein similar to major histocompatibility complex, class II, DP beta 2 (pseudogene), a major histocompatibility complex, class II, DP beta 1 pseudogene, two putative novel transcripts, the COL11A2 gene for collagen, type XI, alpha 2, the RXRB gene for retinoid X receptor, beta, the HKE4 gene for HLA-class II region expressed gene KE4, the 5' end of the HSD17B8 gene for hydroxysteroid (17-beta) dehydrogenase 8 and four CpG islands, complete sequence Length = 187964 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 attggaaaaatcccaaagag 257 |||||||||||||||||||| Sbjct: 172136 attggaaaaatcccaaagag 172155
>emb|AL645940.4| Human DNA sequence from clone XXbac-157A10 on chromosome 6 contains the 3' end of the gene for a novel protein similar to major histocompatibility complex, class II, DP beta 2 pseudogene, a major histocompatibility complex, class II, DP beta 1 pseudogene, two putative novel transcripts, the COL11A2 gene for collagen, type XI, alpha 2, the RXRB gene for retinoid X receptor, beta, the HKE4 gene for HLA-class II region expressed gene KE4, the FABGL gene for hydroxysteroid (17-beta) dehydrogenase 8, the RING1 gene for ring finger protein 1, a zinger finger protein pseudogene, a HIV TAT specific factor 1 (HTATSF1) pseudogene, a novel transcript, the SACM2L gene for SAC2 suppressor of actin mutations 2-like (yeast), the 5' end of the RPS18 gene for ribosomal protein S18 and six CpG islands, complete sequence Length = 158033 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 attggaaaaatcccaaagag 257 |||||||||||||||||||| Sbjct: 75552 attggaaaaatcccaaagag 75571
>emb|AL590672.14| Human DNA sequence from clone CTD-2609B1 on chromosome 9 Contains the 5' end of a malic enzyme pseudogene, complete sequence Length = 60532 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 tctttccctgtctctctttt 511 |||||||||||||||||||| Sbjct: 38330 tctttccctgtctctctttt 38311
>emb|AL157780.12| Human DNA sequence from clone RP11-98E22 on chromosome 9q33.1-33.3 Contains a CpG island, complete sequence Length = 160114 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 tctttccctgtctctctttt 511 |||||||||||||||||||| Sbjct: 6821 tctttccctgtctctctttt 6802
>emb|AL031228.1|HS1033B10 Human DNA sequence from clone RP5-1033B10 on chromosome 6p21.2-21.31 Contains the 3' end of the C6ORF11 gene for chromosome 6 open reading frame 11 (BING4), the B3GALT4 gene for UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase polypeptide 4 (GalT4,Gal-T2,beta3GALT4,beta3Gal-T4), the RPS18 gene for 40S ribosomal protein S18 (KE3,HKE3,KE-3), the SACM2L gene for SAC2 suppressor of actin mutations 2-like (yeast)(ARE1,SAC2,ARE-1,RP5-1033B10), a pseudogene similar to part of HTATSF1 (HIV TAT specific factor 1), the RING1 gene for ring finger protein 1 (RNF1), the HSD17B8 gene for hydroxysteroid (17-beta) dehydrogenase 8 (KE6,FABG,HKE6,FABGL,RING2,H2-KE6,D6S2245E), the HKE4 gene for HLA class II region protein KE4 (KE4,RING5,H2-KE4,D6S115E,D6S2244E), the RXRB gene for retinoid X receptor beta (NR2B2,RCoR-1,H-2RIIBP), the COL11A2 gene for collagen type XI alpha 2 (HKE5,PARP,STL3,DFNA13), an HLA class II histocompatability antigen D or S beta pseudogene,the gene for a novel protein similar to major histocompatibility complex class II DP beta 1 precursor, three novel genes and seven CpG islands, complete sequence Length = 175737 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 attggaaaaatcccaaagag 257 |||||||||||||||||||| Sbjct: 95713 attggaaaaatcccaaagag 95694
>ref|NM_001005449.1| Xenopus tropicalis baculoviral IAP repeat-containing 2 (birc2), mRNA Length = 2159 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gctggccctcttccttccct 81 |||||||||||||||||||| Sbjct: 149 gctggccctcttccttccct 168
>emb|CR936877.4| Human DNA sequence from clone DAMC-269O2 on chromosome 6, complete sequence Length = 50562 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 attggaaaaatcccaaagag 257 |||||||||||||||||||| Sbjct: 37803 attggaaaaatcccaaagag 37822
>emb|CR354565.6| Human DNA sequence from clone DAMA-248N13 on chromosome 6, complete sequence Length = 61882 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 attggaaaaatcccaaagag 257 |||||||||||||||||||| Sbjct: 48503 attggaaaaatcccaaagag 48522
>emb|CR759733.4| Human DNA sequence from clone DADB-100D22 on chromosome 6, complete sequence Length = 104205 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 attggaaaaatcccaaagag 257 |||||||||||||||||||| Sbjct: 62805 attggaaaaatcccaaagag 62824
>gb|AC163712.3| Gallus gallus BAC clone CH261-29M9 from chromosome ul, complete sequence Length = 236367 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 ttctttccctgtctctcttt 510 |||||||||||||||||||| Sbjct: 109503 ttctttccctgtctctcttt 109522
>gb|AC113376.2| Homo sapiens chromosome 5 clone RP11-262B5, complete sequence Length = 161498 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 568 cctggcaatttgttgttgtt 587 |||||||||||||||||||| Sbjct: 20939 cctggcaatttgttgttgtt 20958
>gb|AC092659.2| Homo sapiens BAC clone RP11-495I15 from 4, complete sequence Length = 160529 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 tcattctttccctgtctctc 507 |||||||||||||||||||| Sbjct: 43928 tcattctttccctgtctctc 43909
>ref|NM_067180.2| Caenorhabditis elegans Y75B8A.8 (Y75B8A.8) mRNA, complete cds Length = 2278 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 550 agcttctgaagtactggacc 569 |||||||||||||||||||| Sbjct: 1895 agcttctgaagtactggacc 1876
>gb|AC148711.1| Macaca mulatta Major Histocompatibility Complex BAC MMU404O15, complete sequence Length = 157177 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 attggaaaaatcccaaagag 257 |||||||||||||||||||| Sbjct: 141499 attggaaaaatcccaaagag 141518
>gb|AC148707.1| Macaca mulatta Major Histocompatibility Complex BAC MMU380B12, complete sequence Length = 171055 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 attggaaaaatcccaaagag 257 |||||||||||||||||||| Sbjct: 7161 attggaaaaatcccaaagag 7180
>gb|AC148674.1| Macaca mulatta Major Histocompatibility Complex BAC MMU103F20, complete sequence Length = 174172 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 attggaaaaatcccaaagag 257 |||||||||||||||||||| Sbjct: 99725 attggaaaaatcccaaagag 99744
>emb|AL590328.2|CNS07EG5 Human chromosome 14 DNA sequence BAC R-818K5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 175210 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cttaccctccttggagcagc 178 |||||||||||||||||||| Sbjct: 116815 cttaccctccttggagcagc 116834
>gb|DQ324357.1| (Populus tomentosa x P. bolleana) x P. tomentosa var. truncata clone SS_J11 unknown genomic sequence Length = 506 Score = 40.1 bits (20), Expect = 8.5 Identities = 59/72 (81%) Strand = Plus / Minus Query: 409 tggcattgatgtacagctacttgaatatatctattagcaaaaacattgtacctgatgaaa 468 |||| ||| |||||| |||||| || ||||| || ||||||||||| | || ||||| | Sbjct: 335 tggctttgttgtacaactacttaaacatatcaataagcaaaaacataattccagatgaga 276 Query: 469 tcaaagggaggg 480 ||||||| |||| Sbjct: 275 tcaaaggaaggg 264
>emb|AL121839.3|CNS01DSQ Human chromosome 14 DNA sequence BAC R-747H7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 200853 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cttaccctccttggagcagc 178 |||||||||||||||||||| Sbjct: 12796 cttaccctccttggagcagc 12815
>gb|AC174642.2| Mus musculus BAC clone RP24-362N12 from chromosome 7, complete sequence Length = 144527 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 agctggccctcttccttccc 80 |||||||||||||||||||| Sbjct: 33302 agctggccctcttccttccc 33321
>gb|U32169.1|HSU32169 Human pro-a2 chain of collagen type XI (COL11A2) gene, complete cds Length = 28789 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 attggaaaaatcccaaagag 257 |||||||||||||||||||| Sbjct: 1721 attggaaaaatcccaaagag 1702
>emb|AL033514.1|CEY75B8A Caenorhabditis elegans YAC Y75B8A, complete sequence Length = 298406 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 550 agcttctgaagtactggacc 569 |||||||||||||||||||| Sbjct: 100290 agcttctgaagtactggacc 100271
>gb|AC132240.3| Mus musculus BAC clone RP24-411A22 from 3, complete sequence Length = 182978 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 ccatgtccatgttcccaggg 128 |||||||||||||||||||| Sbjct: 122996 ccatgtccatgttcccaggg 122977
>gb|AC087229.27| Mus musculus strain C57BL/6J chromosome 1 clone rp23-191a19, complete sequence Length = 215043 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 atgttcccagggatggaccttacc 140 ||||||||| |||||||||||||| Sbjct: 124947 atgttcccaaggatggaccttacc 124970
>dbj|AP004466.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT09C23, TM0001, complete sequence Length = 103397 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 gcctgttgtgtaatgttatccatg 200 |||||||||||||| ||||||||| Sbjct: 26959 gcctgttgtgtaatattatccatg 26982
>emb|AL845263.10| Mouse DNA sequence from clone RP23-337L20 on chromosome 2, complete sequence Length = 209967 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 cattctttccctgtctctct 508 |||||||||||||||||||| Sbjct: 168452 cattctttccctgtctctct 168471
>emb|AL807390.11| Mouse DNA sequence from clone RP23-223F2 on chromosome 4, complete sequence Length = 150847 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 ttctttccctgtctctcttt 510 |||||||||||||||||||| Sbjct: 58371 ttctttccctgtctctcttt 58390 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,869,691 Number of Sequences: 3902068 Number of extensions: 6869691 Number of successful extensions: 129882 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 129721 Number of HSP's gapped (non-prelim): 161 length of query: 621 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 598 effective length of database: 17,143,297,704 effective search space: 10251692026992 effective search space used: 10251692026992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)