ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal9f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GPI11_GIBZE (Q4HXT5) Glycosylphosphatidylinositol anchor biosynt... 30 6.0
2ZN292_HUMAN (O60281) Zinc finger protein 292 30 6.0
3TW10_NAJSP (Q802B2) Weak neurotoxin 10 precursor (Wntx-10) 30 7.9

>GPI11_GIBZE (Q4HXT5) Glycosylphosphatidylinositol anchor biosynthesis protein|
           11
          Length = 255

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 236 SSKCSLCADRAHA*ALVGRFAWKADCLF*PPTIFKEREVDTVSCLGSPMLSFDMPTSSST 415
           +S  +L A  AH+  L G F W+ D L   P    +  +  V+ + +  L   +P + S+
Sbjct: 28  NSPLALPASIAHSVLLAGLFYWRFDALVADPVTSLQTGLPVVAAIQAVYLMLSLPPAGSS 87

Query: 416 L 418
           L
Sbjct: 88  L 88



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>ZN292_HUMAN (O60281) Zinc finger protein 292|
          Length = 1969

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 420 INVDELVGMSKLSIGDPKQDTVSTSLSLKMVGGQNRQSAFQANLPT 283
           +  D LV    L IGD     +   ++  M      Q+AFQ NLPT
Sbjct: 246 VTQDSLVNSETLKIGDLTPQNLERQVNNLMTFSVQNQAAFQNNLPT 291



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>TW10_NAJSP (Q802B2) Weak neurotoxin 10 precursor (Wntx-10)|
          Length = 86

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 446 GFTISCVPCPRSSPSF*FCQKGTENCKNGEK 538
           G+T++C+ CP       FC+K  + C+NGEK
Sbjct: 19  GYTLTCLNCPEV-----FCKK-FQTCRNGEK 43


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,605,412
Number of Sequences: 219361
Number of extensions: 1943774
Number of successful extensions: 5402
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5402
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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