ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags11c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YO29_CAEEL (P34274) Hypothetical protein ZK688.9 53 2e-15
2GYRB_MYXXA (O33367) DNA gyrase subunit B (EC 5.99.1.3) 32 1.3
3GCSP_XANCP (Q8PBK7) Glycine dehydrogenase [decarboxylating] (EC ... 31 2.9
4APAH_PHOPR (Q6LV43) Bis(5'-nucleosyl)-tetraphosphatase, symmetri... 30 3.8
5O2T27_HUMAN (Q8NH04) Olfactory receptor 2T27 (Olfactory receptor... 30 5.0

>YO29_CAEEL (P34274) Hypothetical protein ZK688.9|
          Length = 281

 Score = 53.1 bits (126), Expect(2) = 2e-15
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
 Frame = +2

Query: 122 YEDKLQTTHLPEMVFGESFVSIQHAQTGVKLHFNALDALKAWKQEALPPVQVPAAAKWKF 301
           Y+ +L+    PEMVF  + ++IQ  + G  + FNALDALK    + LP V+V A+  W+ 
Sbjct: 59  YDRELKLEERPEMVFARNSLTIQFGRLG-SIEFNALDALKMVCADRLPDVKVGASTVWQS 117

Query: 302 RSNPADQVILD----YDYTFTTPYCGS 370
                 Q I +    +D+T+TT Y G+
Sbjct: 118 ARQDRIQQISEHQKPFDWTYTTHYKGT 144



 Score = 48.5 bits (114), Expect(2) = 2e-15
 Identities = 24/44 (54%), Positives = 31/44 (70%)
 Frame = +3

Query: 444 TDDRIDLVALSAKEPILFYDEVILYEDELADSGISFLTARVRVM 575
           T +RID+  L  ++ ILF   + L+EDELAD GI+ L ARVRVM
Sbjct: 153 TTERIDMERLKRRDEILFSSSITLFEDELADHGIAQLLARVRVM 196



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>GYRB_MYXXA (O33367) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 815

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 20/59 (33%), Positives = 24/59 (40%)
 Frame = -2

Query: 403 CIASWFRTTSITPTVWCRECIVIIKYHLISRITSEFPFCCSRNLNRWQCLLFPCLESIK 227
           C  SW RT S TP  WC       +     R  S  P C  R  + W C L  C E ++
Sbjct: 658 CATSWCRTPSTTPRSWCS---TPTRMEPCGRRCSTTPSC--RRRSTWSCRL--CAEHLR 709



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>GCSP_XANCP (Q8PBK7) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 975

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 342 IHSRHHTVGVMLVVLNQDAIQTSLDESSSLCWEDTDDRIDLVALS 476
           IH++ H  G+ L  ++ +A+  SLDE+S+        R D+VAL+
Sbjct: 401 IHAKAHAAGINLRAIDSEAVGISLDETST--------RADVVALA 437



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>APAH_PHOPR (Q6LV43) Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC|
           3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A
           hydrolase) (Diadenosine 5',5'''-P1,P4-tetraphosphate
           pyrophosphohydrolase)
          Length = 273

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 30/99 (30%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
 Frame = -2

Query: 367 PTVWCRECIVIIKYHLISRITSEFPFCCSRNLNRWQCLLFPCLESIKRIEM*FDASLSVL 188
           P  W  E I I +Y       +   FC         C L P    +  +   FD     L
Sbjct: 160 PDFWSNELIGIERYRFTINALTRMRFCYPDGRLDMACKLSPNDPDVGELVPWFD-----L 214

Query: 187 NRHKTLSKHHLR*MCRLKFIF-I*AHRCGVEDGPVVGLD 74
            RH+ L K         K IF   A  CG ED  V+GLD
Sbjct: 215 PRHQVLDK---------KIIFGHWAALCGHEDERVIGLD 244



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>O2T27_HUMAN (Q8NH04) Olfactory receptor 2T27 (Olfactory receptor OR1-67)|
          Length = 317

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 322 LISRITSEFPFCCSRNLNRWQC 257
           L++ +T +FPFC SR +N + C
Sbjct: 158 LLTPVTMQFPFCASREINHFFC 179


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,087,324
Number of Sequences: 219361
Number of extensions: 1499943
Number of successful extensions: 4142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4141
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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