ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags10l24 |
|---|---|
| Clone Library Name | barley_pub |
>TRIPB_HUMAN (Q15643) Thyroid receptor-interacting protein 11 (TRIP-11)| (Golgi-associated microtubule-binding protein 210) (GMAP-210) (Trip230) (Clonal evolution related gene on chromosome 14) Length = 1979 Score = 37.0 bits (84), Expect = 0.052 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 8/139 (5%) Frame = +1 Query: 13 DRILIQEHEILPETASIKTEVVKIADSQFRSATSATQM--------DAYTLNTSAATMES 168 D++++ + E +++ EV ++ D +FRS ++ D+YT AA Sbjct: 1547 DQVMLALKQKQMENTALQNEVQRLRDKEFRSNQELERLRNHLLESEDSYTREALAAEDRE 1606 Query: 169 AASIDHHDVLEPPLINASPNQQRMSEDLASHPAMDTKGFLQKEDNHNMVEKDGSEFKISV 348 A VLE L+++S + ASH A LQ++ N ++D + ++SV Sbjct: 1607 AKLRKKVTVLEEKLVSSSNAMEN-----ASHQASVQVESLQEQLNVVSKQRDETALQLSV 1661 Query: 349 SGITEEEREASKANHEHVI 405 S ++ S AN + V+ Sbjct: 1662 SQEQVKQYALSLANLQMVL 1680
>P60_LISGR (Q01835) Protein p60 precursor (Invasion-associated protein)| Length = 511 Score = 36.2 bits (82), Expect = 0.088 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 5/109 (4%) Frame = +1 Query: 49 ETASIKTEVVKIADSQFRSATSATQMDAYTLNTSAATMESAASIDHHDVLEPPL-----I 213 +T ++K K A + + A A + +A + A + ++P + Sbjct: 214 QTIAVKEAAAKAAPTTVKQAAPAKVAPKQEVKQTAPAKQEQAKPAAKETVKPAVSKPKAA 273 Query: 214 NASPNQQRMSEDLASHPAMDTKGFLQKEDNHNMVEKDGSEFKISVSGIT 360 +P + E AS PA+DT K N + + K S FK+SV+ +T Sbjct: 274 TPAPTAKPAVEQKASTPAVDTNAATYKVQNGDSLGKIASLFKVSVADLT 322
>CHR1_SCHPO (O59732) Chitin synthase regulatory factor 1 (Chs four homolog 4)| Length = 456 Score = 32.3 bits (72), Expect = 1.3 Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 9/154 (5%) Frame = +1 Query: 37 EILPETASIKTEVVKIADSQFRSATSATQMDAYT--------LNTSAATMESAASIDHHD 192 ++LPET + EV + S S+ S D+ + L+ T E+A SI Sbjct: 53 DVLPETNNAHEEVSSSSWS-LSSSDSIMSYDSLSDDVSVLSFLDCPLTTFETAPSIASFS 111 Query: 193 VLEPPLINASPNQQRMSEDLASHPAMDTKGFLQKEDNHNMVEKDGSEFK-ISVSGITEEE 369 + + S + S L+ +K L + + K GSE +S G E E Sbjct: 112 NSAADVSSHSRSSSSWSAKLSRFTKHASKPSLSSNSSDSSFSKSGSESNALSSRGSFELE 171 Query: 370 REASKANHEHVISATTAISRRTGKGQQKKEDNLF 471 H HV A +S+ K KKED+ F Sbjct: 172 PHGI---HRHVSRAKRLLSKFYSKFHHKKEDSSF 202
>YJW5_YEAST (P40889) Hypothetical ATP-dependent helicase YJL225C (EC 3.6.1.-)| Length = 1758 Score = 32.0 bits (71), Expect = 1.7 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Frame = +1 Query: 103 SATSATQMDAYTLNTSAATMESAASIDHHDVLEPPLINA--SPNQQRMSEDLASHPAMDT 276 S+T+AT ++ NTSAAT ES S E +A N+ +ED HP D Sbjct: 1323 SSTNATTTESTNSNTSAATTESTNSNTSATTTESTNASAKEDANKDGNAEDNRFHPVTDI 1382 Query: 277 KGFLQKEDNHNMVEKDGSEFKISVSGITE 363 K MV + + K +E Sbjct: 1383 NKESYKRKGSQMVLLERKKLKAQFPNTSE 1411
>YIR7_YEAST (P40434) Hypothetical ATP-dependent helicase YIL177C (EC 3.6.1.-)| Length = 1758 Score = 32.0 bits (71), Expect = 1.7 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Frame = +1 Query: 103 SATSATQMDAYTLNTSAATMESAASIDHHDVLEPPLINA--SPNQQRMSEDLASHPAMDT 276 S+T+AT ++ NTSAAT ES S E +A N+ +ED HP D Sbjct: 1323 SSTNATTTESTNSNTSAATTESTNSNTSATTTESTNASAKEDANKDGNAEDNRFHPVTDI 1382 Query: 277 KGFLQKEDNHNMVEKDGSEFKISVSGITE 363 K MV + + K +E Sbjct: 1383 NKESYKRKGSQMVLLERKKLKAQFPNTSE 1411
>DESP_HUMAN (P15924) Desmoplakin (DP) (250/210 kDa paraneoplastic pemphigus| antigen) Length = 2871 Score = 32.0 bits (71), Expect = 1.7 Identities = 26/117 (22%), Positives = 45/117 (38%) Frame = +1 Query: 49 ETASIKTEVVKIADSQFRSATSATQMDAYTLNTSAATMESAASIDHHDVLEPPLINASPN 228 E +K E+V++ DS ++ + + L A E H + I Sbjct: 1245 ENRDLKDEIVRLNDSILQATEQRRRAEENALQQKACGSEIMQKKQHLE------IELKQV 1298 Query: 229 QQRMSEDLASHPAMDTKGFLQKEDNHNMVEKDGSEFKISVSGITEEEREASKANHEH 399 Q+ SED A H + +D + +E+ +EF+ E E E SK + + Sbjct: 1299 MQQRSEDNARHKQSLEEAAKTIQDKNKEIERLKAEFQEEAKRRWEYENELSKVRNNY 1355
>DBP3_NEUCR (Q7S5R1) ATP-dependent RNA helicase dbp-3 (EC 3.6.1.-)| Length = 614 Score = 31.2 bits (69), Expect = 2.8 Identities = 23/74 (31%), Positives = 30/74 (40%) Frame = +1 Query: 247 DLASHPAMDTKGFLQKEDNHNMVEKDGSEFKISVSGITEEEREASKANHEHVISATTAIS 426 D A+ P D K +K+D +K + K S TEE ASKA TT + Sbjct: 79 DAAAEPVADKKEKKEKKDKKEKKDKKEKKAKKSDESTTEESTSASKATTN---GTTTPAA 135 Query: 427 RRTGKGQQKKEDNL 468 G K+ D L Sbjct: 136 STNGAYTYKQADAL 149
>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA| helicase mog-5 (EC 3.6.1.-) (Sex determination protein mog-5) (Masculinization of germ line protein 5) Length = 1200 Score = 31.2 bits (69), Expect = 2.8 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 16/88 (18%) Frame = +1 Query: 247 DLASHPAMDTKGFLQKEDNHNMVEKDGSEFKISVS----------------GITEEEREA 378 D H ++ +K + E++ +VEKD +EF I ++ G+ ++ ++ Sbjct: 2 DQLEHLSLVSKVLSEVENHFGVVEKDVAEFVIHLAQENPTFDKLKKALDSQGLGDQFDDS 61 Query: 379 SKANHEHVISATTAISRRTGKGQQKKED 462 A ++ + TA+ ++ KG KED Sbjct: 62 LTATILRIVQSMTAVKKKNKKGGDSKED 89
>SRP_DROME (P52172) Box A-binding factor (ABF) (GATA-binding factor-B)| (Transcription factor GATA-B) (dGATA-B) (Protein serpent) Length = 1264 Score = 30.8 bits (68), Expect = 3.7 Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 11/133 (8%) Frame = +1 Query: 40 ILPETASIKTEVVKIADSQFRSATSATQMDAYTLNTSAATMESAASIDHHDVLEPPLINA 219 ++ ETA + + + T+AT++ T + +AAT E+A D P IN Sbjct: 129 VVSETARQAVTTANASATSTSTVTAATEIATATASDTAATSEAAIDDD------PSAINT 182 Query: 220 SPNQQRMSEDLASHPAMDTK--GFLQKEDNHNMVEKDGSEFKISVSGIT---------EE 366 + N + ++ TK + Q ED ++ ++ ++ E+ Sbjct: 183 NNNNNNSKAQNDASESVKTKVISYHQSEDQQQQQQQQAQIYEQQQQFLSQQLISHHQQEQ 242 Query: 367 EREASKANHEHVI 405 ++A + H+ V+ Sbjct: 243 HQQAQQQQHQQVV 255
>FAF1_RAT (Q924K2) FAS-associated factor 1 (Protein FAF1)| Length = 649 Score = 30.0 bits (66), Expect = 6.3 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -1 Query: 658 AAQEEHLICIGENGASQSASRFLVGRKTSPCSAAVSDED 542 A+ + +C+ E+G S R VGR+TSP E+ Sbjct: 241 ASATDDSMCLAESGLSYPCHRLTVGRRTSPVQTREQSEE 279
>FAF1_MOUSE (P54731) FAS-associated factor 1 (Protein FAF1)| Length = 649 Score = 30.0 bits (66), Expect = 6.3 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -1 Query: 658 AAQEEHLICIGENGASQSASRFLVGRKTSPCSAAVSDED 542 A+ + +C+ E+G S R VGR+TSP E+ Sbjct: 241 ASATDDSMCLAESGLSYPCHRLTVGRRTSPVQTREQSEE 279
>DMP1_HUMAN (Q13316) Dentin matrix acidic phosphoprotein 1 precursor (Dentin| matrix protein 1) (DMP-1) Length = 513 Score = 30.0 bits (66), Expect = 6.3 Identities = 20/84 (23%), Positives = 33/84 (39%) Frame = +1 Query: 214 NASPNQQRMSEDLASHPAMDTKGFLQKEDNHNMVEKDGSEFKISVSGITEEEREASKANH 393 N S + + LA P + E + E+ +E S T+ E +H Sbjct: 25 NESEDSEEWKGHLAQAPTPPLESSESSEGSKVSSEEQANE---DPSDSTQSEEGLGSDDH 81 Query: 394 EHVISATTAISRRTGKGQQKKEDN 465 +++ SR TGKG K+D+ Sbjct: 82 QYIYRLAGGFSRSTGKGGDDKDDD 105
>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of| white-apricot homolog 2) (Clk4-associating SR-related protein) Length = 653 Score = 29.6 bits (65), Expect = 8.3 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +3 Query: 231 TTNVRRSCLSSSNGYKGFFAKGRQPQHGRERWK*IQDISIWHHRRRARGKQ 383 T++ R S SSS +G++ GR + W + S + R R+RG++ Sbjct: 370 TSSSRSSSRSSSRSRRGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRR 420 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,818,836 Number of Sequences: 219361 Number of extensions: 1856436 Number of successful extensions: 5871 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 5631 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5845 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
