ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags11a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete... 54 3e-05
2gb|DP000050.1| Felis catus target 126 genomic scaffold 40 0.48
3gb|AC158976.14| Mus musculus chromosome 15, clone RP24-71M3, com... 36 7.5
4emb|CR637374.2|CNS0EQRO Tetraodon nigroviridis full-length cDNA 36 7.5
5emb|AL133541.21| Human DNA sequence from clone RP1-126E20 on chr... 36 7.5

>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds
          Length = 1373

 Score = 54.0 bits (27), Expect = 3e-05
 Identities = 42/46 (91%), Gaps = 1/46 (2%)
 Strand = Plus / Plus

                                                         
Query: 9   gctgggacgtcccggtnactacatggaagctgcgctgggcatggct 54
           |||||||| ||||||  |||||||||||||||||||||| ||||||
Sbjct: 408 gctgggacttcccgg-cactacatggaagctgcgctggggatggct 452



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>gb|DP000050.1| Felis catus target 126 genomic scaffold
          Length = 269350

 Score = 40.1 bits (20), Expect = 0.48
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     ggaagctgcgctgggcatgg 52
              ||||||||||||||||||||
Sbjct: 103061 ggaagctgcgctgggcatgg 103080



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>gb|AC158976.14| Mus musculus chromosome 15, clone RP24-71M3, complete sequence
          Length = 182465

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                        
Query: 29     acatggaagctgcgctgggcatggct 54
              |||||||||||| |||||| ||||||
Sbjct: 106075 acatggaagctgggctggggatggct 106050



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>emb|CR637374.2|CNS0EQRO Tetraodon nigroviridis full-length cDNA
          Length = 1398

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 28  tacatggaagctgcgctg 45
           ||||||||||||||||||
Sbjct: 119 tacatggaagctgcgctg 136



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>emb|AL133541.21| Human DNA sequence from clone RP1-126E20 on chromosome 6 Contains the
             3' end of the BMP6 gene for bone morphogenetic protein 6,
             the gene for a novel protein similar to protein disulfide
             isomerases and a CpG island, complete sequence
          Length = 117952

 Score = 36.2 bits (18), Expect = 7.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 3     gtgctggctgggacgtcc 20
             ||||||||||||||||||
Sbjct: 47581 gtgctggctgggacgtcc 47598


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 409,515
Number of Sequences: 3902068
Number of extensions: 409515
Number of successful extensions: 67748
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67741
Number of HSP's gapped (non-prelim): 7
length of query: 54
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 34
effective length of database: 17,155,003,908
effective search space: 583270132872
effective search space used: 583270132872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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