ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags10l08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1998_PARUW (Q6M9M7) Hypothetical RNA methyltransferase pc1998 (... 32 1.4
2TIP_PLAF7 (Q8I3H7) T-cell immunomodulatory protein homolog precu... 30 5.3
3YGN2_YEAST (P53126) Hypothetical 12.2 kDa protein in RPL1B-CEG1 ... 29 9.1
4KEFG_SHIFL (Q83PX9) Glutathione-regulated potassium-efflux syste... 29 9.1

>Y1998_PARUW (Q6M9M7) Hypothetical RNA methyltransferase pc1998 (EC 2.1.1.-)|
          Length = 383

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 2   EAWHLENAHAFNFFPGTDSIEVLAIFRR 85
           + W+L+    ++ FPG++ IE+L +F R
Sbjct: 356 QGWNLKKLEGYSLFPGSEHIELLTLFER 383



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>TIP_PLAF7 (Q8I3H7) T-cell immunomodulatory protein homolog precursor|
          Length = 719

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 287 DEFYIGQTKHQPKDLNLGQGICRNSRS*FVSIRNLHSVLFPYRVNQH*DCAVQVSL 454
           +EFY+G   H+ K  N+   I  NS          H ++ PY +N      +Q+S+
Sbjct: 625 EEFYVGMPTHEQKYYNMWVSIIPNS----------HIIVIPYPLNNSNKWQIQLSV 670



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>YGN2_YEAST (P53126) Hypothetical 12.2 kDa protein in RPL1B-CEG1 intergenic|
           region
          Length = 111

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +3

Query: 243 DACIFTADPENWVAAMNFTSAKRSINRRISI*GK-VFVETHVASLSQSGTYIPCYSLIV* 419
           D C+F + P + ++  N   +  SIN  +   GK + +E    +LS+S ++ P   L   
Sbjct: 27  DGCVFLSVPASEISISNIAGSIPSINCWVISTGKPLSLEILADALSKSSSWAPDLKLQEW 86

Query: 420 TSIETVQYRL 449
             I + QY+L
Sbjct: 87  QIISSYQYKL 96



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>KEFG_SHIFL (Q83PX9) Glutathione-regulated potassium-efflux system ancillary|
           protein kefG
          Length = 183

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
 Frame = -3

Query: 359 SFYKYLALN*DPSVDA------SFGRCKIHRSNPIFWVGGKDASIRQISTTARATSSLLV 198
           S Y+Y ALN  P  D       + G C++H  +PI     +  S +++++ ARA    L 
Sbjct: 116 SAYRYDALNRYPMSDVLRPFELAAGMCRMHWLSPIIIYWARRQSAKELASHARAYGDWLA 175

Query: 197 *P 192
            P
Sbjct: 176 NP 177


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,333,585
Number of Sequences: 219361
Number of extensions: 1176099
Number of successful extensions: 2607
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2607
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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