ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags10k08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC157508.1| Dasypus novemcinctus, clone Dasypus novemcinctus-... 46 0.12
2ref|NM_191142.1| Oryza sativa (japonica cultivar-group), predic... 42 1.9
3gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 42 1.9
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
5dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
6gb|AC167562.5| Culex pipiens quinquefasciatus, clone Culex pipie... 42 1.9
7gb|AC129585.12| Mus musculus chromosome 7, clone RP24-297P18, co... 40 7.3
8gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 7.3
9ref|XM_656271.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 7.3
10emb|AL353663.10| Human DNA sequence from clone RP5-1007B16 on ch... 40 7.3
11gb|AC116686.15| Mus musculus chromosome 7, clone RP23-457H7, com... 40 7.3
12emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 7.3
13gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, comple... 40 7.3
14emb|AL928803.6| Mouse DNA sequence from clone RP23-319N14 on chr... 40 7.3
15gb|AC112976.8| Mus musculus chromosome 7, clone RP24-475E2, comp... 40 7.3

>gb|AC157508.1| Dasypus novemcinctus, clone Dasypus novemcinctus-10241875H10,
            complete sequence
          Length = 42729

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 280  atggatccttctccatcttcaaa 302
            |||||||||||||||||||||||
Sbjct: 9751 atggatccttctccatcttcaaa 9729



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>ref|NM_191142.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1821

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 156 gccgcatcaccgcgcccgccg 176
           |||||||||||||||||||||
Sbjct: 95  gccgcatcaccgcgcccgccg 75



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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 160    catcaccgcgcccgccgccca 180
              |||||||||||||||||||||
Sbjct: 857047 catcaccgcgcccgccgccca 857027



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 156      gccgcatcaccgcgcccgccg 176
                |||||||||||||||||||||
Sbjct: 30930539 gccgcatcaccgcgcccgccg 30930559



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>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0638D12
          Length = 161277

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 156    gccgcatcaccgcgcccgccg 176
              |||||||||||||||||||||
Sbjct: 130906 gccgcatcaccgcgcccgccg 130926



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>gb|AC167562.5| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940122D9, complete sequence
          Length = 114898

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 160   catcaccgcgcccgccgccca 180
             |||||||||||||||||||||
Sbjct: 84741 catcaccgcgcccgccgccca 84761



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>gb|AC129585.12| Mus musculus chromosome 7, clone RP24-297P18, complete sequence
          Length = 163046

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 408    gtcttactccctgcagatgt 427
              ||||||||||||||||||||
Sbjct: 118344 gtcttactccctgcagatgt 118325



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 408   gtcttactccctgcagatgt 427
             ||||||||||||||||||||
Sbjct: 29244 gtcttactccctgcagatgt 29263



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 408  gtcttactccctgcagatgt 427
            ||||||||||||||||||||
Sbjct: 3942 gtcttactccctgcagatgt 3961



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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    ccaccccatccagccgccgc 160
              ||||||||||||||||||||
Sbjct: 366713 ccaccccatccagccgccgc 366732



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>ref|XM_656271.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3759.2), mRNA
          Length = 639

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 143 accccatccagccgccgcat 162
           ||||||||||||||||||||
Sbjct: 417 accccatccagccgccgcat 398



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>emb|AL353663.10| Human DNA sequence from clone RP5-1007B16 on chromosome 6, complete
             sequence
          Length = 77275

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 446   tgaggcaaggaggatggggaacag 469
             ||||||| ||||||||||||||||
Sbjct: 61080 tgaggcatggaggatggggaacag 61103



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>gb|AC116686.15| Mus musculus chromosome 7, clone RP23-457H7, complete sequence
          Length = 223846

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 408   gtcttactccctgcagatgt 427
             ||||||||||||||||||||
Sbjct: 36154 gtcttactccctgcagatgt 36173



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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 150     ccagccgccgcatcaccgcgcccgccgc 177
               ||||||||||| ||| ||||||||||||
Sbjct: 1801406 ccagccgccgcgtcagcgcgcccgccgc 1801433



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>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome
          Length = 156487

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 243   gttcccgcatgacccccctcctcccgcg 270
             ||||||| ||||||||||||| ||||||
Sbjct: 34182 gttcccgaatgacccccctccgcccgcg 34155



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>emb|AL928803.6| Mouse DNA sequence from clone RP23-319N14 on chromosome 2, complete
             sequence
          Length = 109092

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   ggcaaggaggatggggaaca 468
             ||||||||||||||||||||
Sbjct: 64435 ggcaaggaggatggggaaca 64454



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>gb|AC112976.8| Mus musculus chromosome 7, clone RP24-475E2, complete sequence
          Length = 167823

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 408    gtcttactccctgcagatgt 427
              ||||||||||||||||||||
Sbjct: 165370 gtcttactccctgcagatgt 165389


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,379,921
Number of Sequences: 3902068
Number of extensions: 3379921
Number of successful extensions: 64286
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64115
Number of HSP's gapped (non-prelim): 171
length of query: 540
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 517
effective length of database: 17,143,297,704
effective search space: 8863084912968
effective search space used: 8863084912968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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