| Clone Name | bags10j15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475270.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1095 Score = 349 bits (176), Expect = 5e-93 Identities = 347/404 (85%) Strand = Plus / Plus Query: 1 gaaggtggtgttagccttgactacttacaaggtttgcatgagaaacatgagagctggcta 60 ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| | Sbjct: 616 gaaggtggtgttactcttgactacttgcaaggtttgcatgagaaacacgagagctggttg 675 Query: 61 tttccttcgaaaggaggaggcagtggtgtattatcagttagtcagctgcccacgcatatg 120 ||||||| ||||||||||| | |||||| ||||| || |||||||||||||| ||| || Sbjct: 676 cttccttcaaaaggaggaggtactggtgtgttatctgtcagtcagctgcccacacatttg 735 Query: 121 gatggctccttgcctccaggaatacgggatcgtgtcttttacctggaaggagatcacatg 180 || || ||||||||||||| ||| || ||||||||||||||| ||||||||||||||||| Sbjct: 736 gaaggttccttgcctccagcaattcgagatcgtgtcttttacttggaaggagatcacatg 795 Query: 181 cattctagcatccaaaaggttcctgctctggtcttggattgtgaacctgacattgatttc 240 || || |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 796 cactcaagcatccagaaggtccctgctctggtcttggattgtgaacctgacattgatttc 855 Query: 241 aacagagacatacaagccaaacgaaaatatgcccagcaagttgcggagttctttgaattc 300 |||| ||| ||| |||| ||||| ||||||| ||||||||||| || |||||| |||| Sbjct: 856 aacaaagatatagaagctaaacggcaatatgctcagcaagttgcagaattctttcaattt 915 Query: 301 gtgaatagcaaaaaggaagcgccatccgagcagacaagcactgagaaggaccgcatgaat 360 ||||| | || |||||||| ||||| || || ||||||||||| ||| |||| || ||| Sbjct: 916 gtgaagaaaaagaaggaagctccatctgaacaaacaagcactgacaagaaccgtatcaat 975 Query: 361 cccaagatcatgttccctaacagaggtggtttgtgggtccctga 404 || |||||||| | ||| ||| ||| || |||||||| ||||| Sbjct: 976 ccacagatcatgcttcctcacaaaggcggattgtgggttcctga 1019
>dbj|AK071740.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108J12, full insert sequence Length = 1741 Score = 349 bits (176), Expect = 5e-93 Identities = 347/404 (85%) Strand = Plus / Plus Query: 1 gaaggtggtgttagccttgactacttacaaggtttgcatgagaaacatgagagctggcta 60 ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| | Sbjct: 952 gaaggtggtgttactcttgactacttgcaaggtttgcatgagaaacacgagagctggttg 1011 Query: 61 tttccttcgaaaggaggaggcagtggtgtattatcagttagtcagctgcccacgcatatg 120 ||||||| ||||||||||| | |||||| ||||| || |||||||||||||| ||| || Sbjct: 1012 cttccttcaaaaggaggaggtactggtgtgttatctgtcagtcagctgcccacacatttg 1071 Query: 121 gatggctccttgcctccaggaatacgggatcgtgtcttttacctggaaggagatcacatg 180 || || ||||||||||||| ||| || ||||||||||||||| ||||||||||||||||| Sbjct: 1072 gaaggttccttgcctccagcaattcgagatcgtgtcttttacttggaaggagatcacatg 1131 Query: 181 cattctagcatccaaaaggttcctgctctggtcttggattgtgaacctgacattgatttc 240 || || |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1132 cactcaagcatccagaaggtccctgctctggtcttggattgtgaacctgacattgatttc 1191 Query: 241 aacagagacatacaagccaaacgaaaatatgcccagcaagttgcggagttctttgaattc 300 |||| ||| ||| |||| ||||| ||||||| ||||||||||| || |||||| |||| Sbjct: 1192 aacaaagatatagaagctaaacggcaatatgctcagcaagttgcagaattctttcaattt 1251 Query: 301 gtgaatagcaaaaaggaagcgccatccgagcagacaagcactgagaaggaccgcatgaat 360 ||||| | || |||||||| ||||| || || ||||||||||| ||| |||| || ||| Sbjct: 1252 gtgaagaaaaagaaggaagctccatctgaacaaacaagcactgacaagaaccgtatcaat 1311 Query: 361 cccaagatcatgttccctaacagaggtggtttgtgggtccctga 404 || |||||||| | ||| ||| ||| || |||||||| ||||| Sbjct: 1312 ccacagatcatgcttcctcacaaaggcggattgtgggttcctga 1355
>dbj|AK059420.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D11, full insert sequence Length = 1235 Score = 341 bits (172), Expect = 1e-90 Identities = 346/404 (85%) Strand = Plus / Plus Query: 1 gaaggtggtgttagccttgactacttacaaggtttgcatgagaaacatgagagctggcta 60 ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| | Sbjct: 407 gaaggtggtgttactcttgactacttgcaaggtttgcatgagaaacacgagagctggttg 466 Query: 61 tttccttcgaaaggaggaggcagtggtgtattatcagttagtcagctgcccacgcatatg 120 ||||||| ||||||||||| | |||||| ||||| || |||||||||||||| ||| || Sbjct: 467 cttccttcaaaaggaggaggtactggtgtgttatctgtcagtcagctgcccacacatttg 526 Query: 121 gatggctccttgcctccaggaatacgggatcgtgtcttttacctggaaggagatcacatg 180 || || ||||||| ||||| ||| || ||||||||||||||| ||||||||||||||||| Sbjct: 527 gaaggttccttgcttccagcaattcgagatcgtgtcttttacttggaaggagatcacatg 586 Query: 181 cattctagcatccaaaaggttcctgctctggtcttggattgtgaacctgacattgatttc 240 || || |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 587 cactcaagcatccagaaggtccctgctctggtcttggattgtgaacctgacattgatttc 646 Query: 241 aacagagacatacaagccaaacgaaaatatgcccagcaagttgcggagttctttgaattc 300 |||| ||| ||| |||| ||||| ||||||| ||||||||||| || |||||| |||| Sbjct: 647 aacaaagatatagaagctaaacggcaatatgctcagcaagttgcagaattctttcaattt 706 Query: 301 gtgaatagcaaaaaggaagcgccatccgagcagacaagcactgagaaggaccgcatgaat 360 ||||| | || |||||||| ||||| || || ||||||||||| ||| |||| || ||| Sbjct: 707 gtgaagaaaaagaaggaagctccatctgaacaaacaagcactgacaagaaccgtatcaat 766 Query: 361 cccaagatcatgttccctaacagaggtggtttgtgggtccctga 404 || |||||||| | ||| ||| ||| || |||||||| ||||| Sbjct: 767 ccacagatcatgcttcctcacaaaggcggattgtgggttcctga 810
>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0048I21, complete sequence Length = 137650 Score = 206 bits (104), Expect = 4e-50 Identities = 176/200 (88%) Strand = Plus / Plus Query: 1 gaaggtggtgttagccttgactacttacaaggtttgcatgagaaacatgagagctggcta 60 ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| | Sbjct: 98773 gaaggtggtgttactcttgactacttgcaaggtttgcatgagaaacacgagagctggttg 98832 Query: 61 tttccttcgaaaggaggaggcagtggtgtattatcagttagtcagctgcccacgcatatg 120 ||||||| ||||||||||| | |||||| ||||| || |||||||||||||| ||| || Sbjct: 98833 cttccttcaaaaggaggaggtactggtgtgttatctgtcagtcagctgcccacacatttg 98892 Query: 121 gatggctccttgcctccaggaatacgggatcgtgtcttttacctggaaggagatcacatg 180 || || ||||||||||||| ||| || ||||||||||||||| ||||||||||||||||| Sbjct: 98893 gaaggttccttgcctccagcaattcgagatcgtgtcttttacttggaaggagatcacatg 98952 Query: 181 cattctagcatccaaaaggt 200 || || |||||||| ||||| Sbjct: 98953 cactcaagcatccagaaggt 98972 Score = 93.7 bits (47), Expect = 5e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 197 aggttcctgctctggtcttggattgtgaacctgacattgatttcaacagagacatacaag 256 |||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| Sbjct: 99052 aggtccctgctctggtcttggattgtgaacctgacattgatttcaacaaagatatagaag 99111 Query: 257 ccaaacg 263 | ||||| Sbjct: 99112 ctaaacg 99118 Score = 67.9 bits (34), Expect = 3e-08 Identities = 112/138 (81%) Strand = Plus / Plus Query: 267 atatgcccagcaagttgcggagttctttgaattcgtgaatagcaaaaaggaagcgccatc 326 |||||| ||||||||||| || |||||| |||| ||||| | || |||||||| ||||| Sbjct: 99368 atatgctcagcaagttgcagaattctttcaatttgtgaagaaaaagaaggaagctccatc 99427 Query: 327 cgagcagacaagcactgagaaggaccgcatgaatcccaagatcatgttccctaacagagg 386 || || ||||||||||| ||| |||| || ||||| |||||||| | ||| ||| ||| Sbjct: 99428 tgaacaaacaagcactgacaagaaccgtatcaatccacagatcatgcttcctcacaaagg 99487 Query: 387 tggtttgtgggtccctga 404 || |||||||| ||||| Sbjct: 99488 cggattgtgggttcctga 99505
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 206 bits (104), Expect = 4e-50 Identities = 176/200 (88%) Strand = Plus / Plus Query: 1 gaaggtggtgttagccttgactacttacaaggtttgcatgagaaacatgagagctggcta 60 ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| | Sbjct: 20971995 gaaggtggtgttactcttgactacttgcaaggtttgcatgagaaacacgagagctggttg 20972054 Query: 61 tttccttcgaaaggaggaggcagtggtgtattatcagttagtcagctgcccacgcatatg 120 ||||||| ||||||||||| | |||||| ||||| || |||||||||||||| ||| || Sbjct: 20972055 cttccttcaaaaggaggaggtactggtgtgttatctgtcagtcagctgcccacacatttg 20972114 Query: 121 gatggctccttgcctccaggaatacgggatcgtgtcttttacctggaaggagatcacatg 180 || || ||||||||||||| ||| || ||||||||||||||| ||||||||||||||||| Sbjct: 20972115 gaaggttccttgcctccagcaattcgagatcgtgtcttttacttggaaggagatcacatg 20972174 Query: 181 cattctagcatccaaaaggt 200 || || |||||||| ||||| Sbjct: 20972175 cactcaagcatccagaaggt 20972194 Score = 93.7 bits (47), Expect = 5e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 197 aggttcctgctctggtcttggattgtgaacctgacattgatttcaacagagacatacaag 256 |||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| Sbjct: 20972274 aggtccctgctctggtcttggattgtgaacctgacattgatttcaacaaagatatagaag 20972333 Query: 257 ccaaacg 263 | ||||| Sbjct: 20972334 ctaaacg 20972340 Score = 67.9 bits (34), Expect = 3e-08 Identities = 112/138 (81%) Strand = Plus / Plus Query: 267 atatgcccagcaagttgcggagttctttgaattcgtgaatagcaaaaaggaagcgccatc 326 |||||| ||||||||||| || |||||| |||| ||||| | || |||||||| ||||| Sbjct: 20972590 atatgctcagcaagttgcagaattctttcaatttgtgaagaaaaagaaggaagctccatc 20972649 Query: 327 cgagcagacaagcactgagaaggaccgcatgaatcccaagatcatgttccctaacagagg 386 || || ||||||||||| ||| |||| || ||||| |||||||| | ||| ||| ||| Sbjct: 20972650 tgaacaaacaagcactgacaagaaccgtatcaatccacagatcatgcttcctcacaaagg 20972709 Query: 387 tggtttgtgggtccctga 404 || |||||||| ||||| Sbjct: 20972710 cggattgtgggttcctga 20972727
>dbj|AK105804.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-B04, full insert sequence Length = 1783 Score = 167 bits (84), Expect = 4e-38 Identities = 243/296 (82%) Strand = Plus / Plus Query: 4 ggtggtgttagccttgactacttacaaggtttgcatgagaaacatgagagctggctattt 63 |||||||||| ||||| ||| | | |||||||||||||||||||||||||||||| || Sbjct: 1056 ggtggtgttactcttgattaccttcgaggtttgcatgagaaacatgagagctggctgctt 1115 Query: 64 ccttcgaaaggaggaggcagtggtgtattatcagttagtcagctgcccacgcatatggat 123 ||||| |||||| ||| |||||||||||| || ||||| | || |||||||| Sbjct: 1116 ccttccaaaggacaaggtcctggtgtattatcggtcagtcaagttccagtccatatggag 1175 Query: 124 ggctccttgcctccaggaatacgggatcgtgtcttttacctggaaggagatcacatgcat 183 ||||| |||||||| | ||| | || || || || ||| | ||||||||||| |||||| Sbjct: 1176 ggctctttgcctccggatataagagaacgagtattctacttagaaggagatcatatgcat 1235 Query: 184 tctagcatccaaaaggttcctgctctggtcttggattgtgaacctgacattgatttcaac 243 ||||| ||||| |||||||||||||||||| | || || |||| |||||||||||| ||| Sbjct: 1236 tctagtatccagaaggttcctgctctggtcctcgactgcgaacatgacattgattttaac 1295 Query: 244 agagacatacaagccaaacgaaaatatgcccagcaagttgcggagttctttgaatt 299 | || || ||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct: 1296 aaggatattgaagccaaacgacaatatgcccgacaagttgcggagttctttgaatt 1351
>ref|NM_190823.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 903 Score = 121 bits (61), Expect = 2e-24 Identities = 196/241 (81%) Strand = Plus / Plus Query: 4 ggtggtgttagccttgactacttacaaggtttgcatgagaaacatgagagctggctattt 63 |||||||||| ||||| ||| | | |||||||||||||||||||||||||||||| || Sbjct: 637 ggtggtgttactcttgattaccttcgaggtttgcatgagaaacatgagagctggctgctt 696 Query: 64 ccttcgaaaggaggaggcagtggtgtattatcagttagtcagctgcccacgcatatggat 123 ||||| |||||| ||| |||||||||||| || ||||| | || |||||||| Sbjct: 697 ccttccaaaggacaaggtcctggtgtattatcggtcagtcaagttccagtccatatggag 756 Query: 124 ggctccttgcctccaggaatacgggatcgtgtcttttacctggaaggagatcacatgcat 183 ||||| |||||||| | ||| | || || || || ||| | ||||||||||| |||||| Sbjct: 757 ggctctttgcctccggatataagagaacgagtattctacttagaaggagatcatatgcat 816 Query: 184 tctagcatccaaaaggttcctgctctggtcttggattgtgaacctgacattgatttcaac 243 ||||| ||||| |||||||||||||||||| | || || |||| |||||||||||| ||| Sbjct: 817 tctagtatccagaaggttcctgctctggtcctcgactgcgaacatgacattgattttaac 876 Query: 244 a 244 | Sbjct: 877 a 877
>dbj|AK101275.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033B15, full insert sequence Length = 3103 Score = 121 bits (61), Expect = 2e-24 Identities = 211/261 (80%) Strand = Plus / Plus Query: 4 ggtggtgttagccttgactacttacaaggtttgcatgagaaacatgagagctggctattt 63 |||||||||| ||||| ||| | | |||||||||||||||||||||||||||||| || Sbjct: 1208 ggtggtgttactcttgattaccttcgaggtttgcatgagaaacatgagagctggctgctt 1267 Query: 64 ccttcgaaaggaggaggcagtggtgtattatcagttagtcagctgcccacgcatatggat 123 ||||| |||||| ||| |||||||||||| || ||||| | || |||||||| Sbjct: 1268 ccttccaaaggacaaggtcctggtgtattatcggtcagtcaagttccagtccatatggag 1327 Query: 124 ggctccttgcctccaggaatacgggatcgtgtcttttacctggaaggagatcacatgcat 183 ||||| |||||||| | ||| | || || || || ||| | ||||||||||| |||||| Sbjct: 1328 ggctctttgcctccggatataagagaacgagtattctacttagaaggagatcatatgcat 1387 Query: 184 tctagcatccaaaaggttcctgctctggtcttggattgtgaacctgacattgatttcaac 243 ||||| ||||| |||||||||||||||||| | || || |||| |||||||||||| ||| Sbjct: 1388 tctagtatccagaaggttcctgctctggtcctcgactgcgaacatgacattgattttaac 1447 Query: 244 agagacatacaagccaaacga 264 | || || ||||||||||| Sbjct: 1448 aaggatattgaagccaaacga 1468 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 267 atatgcccagcaagttgcggagttctttgaatt 299 |||||||| ||||||||||||||||||||||| Sbjct: 2639 atatgcccgacaagttgcggagttctttgaatt 2671
>ref|NM_105862.3| Arabidopsis thaliana ATP binding / phosphotransferase, alcohol group as acceptor AT1G72040 mRNA, complete cds Length = 2099 Score = 89.7 bits (45), Expect = 7e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 151 cgtgtcttttacctggaaggagatcacatgcattctagcatccaaaaggttcctgctctg 210 |||||||||||| |||||||| |||| ||||||||||| ||||| ||||| ||||||||| Sbjct: 1520 cgtgtcttttacttggaaggaaatcatatgcattctagtatccagaaggtccctgctctg 1579 Query: 211 gtcttggattgtgaacc 227 || ||||| |||||||| Sbjct: 1580 gttttggactgtgaacc 1596
>gb|BT022033.1| Arabidopsis thaliana At1g72040 gene, complete cds Length = 1911 Score = 89.7 bits (45), Expect = 7e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 151 cgtgtcttttacctggaaggagatcacatgcattctagcatccaaaaggttcctgctctg 210 |||||||||||| |||||||| |||| ||||||||||| ||||| ||||| ||||||||| Sbjct: 1465 cgtgtcttttacttggaaggaaatcatatgcattctagtatccagaaggtccctgctctg 1524 Query: 211 gtcttggattgtgaacc 227 || ||||| |||||||| Sbjct: 1525 gttttggactgtgaacc 1541
>gb|AY089150.1| Arabidopsis thaliana clone 3878 mRNA, complete sequence Length = 883 Score = 89.7 bits (45), Expect = 7e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 151 cgtgtcttttacctggaaggagatcacatgcattctagcatccaaaaggttcctgctctg 210 |||||||||||| |||||||| |||| ||||||||||| ||||| ||||| ||||||||| Sbjct: 304 cgtgtcttttacttggaaggaaatcatatgcattctagtatccagaaggtccctgctctg 363 Query: 211 gtcttggattgtgaacc 227 || ||||| |||||||| Sbjct: 364 gttttggactgtgaacc 380
>gb|AY459335.1| Oryza sativa (japonica cultivar-group) clone CL026180.5 R2R3-MYB gene region Length = 24910 Score = 81.8 bits (41), Expect = 2e-12 Identities = 158/197 (80%) Strand = Plus / Minus Query: 4 ggtggtgttagccttgactacttacaaggtttgcatgagaaacatgagagctggctattt 63 |||||||||| ||||| ||| | | |||||||||||||||||||||||||||||| || Sbjct: 5462 ggtggtgttactcttgattaccttcgaggtttgcatgagaaacatgagagctggctgctt 5403 Query: 64 ccttcgaaaggaggaggcagtggtgtattatcagttagtcagctgcccacgcatatggat 123 ||||| |||||| ||| |||||||||||| || ||||| | || |||||||| Sbjct: 5402 ccttccaaaggacaaggtcctggtgtattatcggtcagtcaagttccagtccatatggag 5343 Query: 124 ggctccttgcctccaggaatacgggatcgtgtcttttacctggaaggagatcacatgcat 183 ||||| |||||||| | ||| | || || || || ||| | ||||||||||| |||||| Sbjct: 5342 ggctctttgcctccggatataagagaacgagtattctacttagaaggagatcatatgcat 5283 Query: 184 tctagcatccaaaaggt 200 ||||| ||||| ||||| Sbjct: 5282 tctagtatccagaaggt 5266 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 267 atatgcccagcaagttgcggagttctttgaatt 299 |||||||| ||||||||||||||||||||||| Sbjct: 3956 atatgcccgacaagttgcggagttctttgaatt 3924 Score = 48.1 bits (24), Expect = 0.025 Identities = 57/68 (83%) Strand = Plus / Minus Query: 197 aggttcctgctctggtcttggattgtgaacctgacattgatttcaacagagacatacaag 256 ||||||||||||||||| | || || |||| |||||||||||| |||| || || ||| Sbjct: 5194 aggttcctgctctggtcctcgactgcgaacatgacattgattttaacaaggatattgaag 5135 Query: 257 ccaaacga 264 |||||||| Sbjct: 5134 ccaaacga 5127
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 81.8 bits (41), Expect = 2e-12 Identities = 158/197 (80%) Strand = Plus / Minus Query: 4 ggtggtgttagccttgactacttacaaggtttgcatgagaaacatgagagctggctattt 63 |||||||||| ||||| ||| | | |||||||||||||||||||||||||||||| || Sbjct: 37910003 ggtggtgttactcttgattaccttcgaggtttgcatgagaaacatgagagctggctgctt 37909944 Query: 64 ccttcgaaaggaggaggcagtggtgtattatcagttagtcagctgcccacgcatatggat 123 ||||| |||||| ||| |||||||||||| || ||||| | || |||||||| Sbjct: 37909943 ccttccaaaggacaaggtcctggtgtattatcggtcagtcaagttccagtccatatggag 37909884 Query: 124 ggctccttgcctccaggaatacgggatcgtgtcttttacctggaaggagatcacatgcat 183 ||||| |||||||| | ||| | || || || || ||| | ||||||||||| |||||| Sbjct: 37909883 ggctctttgcctccggatataagagaacgagtattctacttagaaggagatcatatgcat 37909824 Query: 184 tctagcatccaaaaggt 200 ||||| ||||| ||||| Sbjct: 37909823 tctagtatccagaaggt 37909807 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 267 atatgcccagcaagttgcggagttctttgaatt 299 |||||||| ||||||||||||||||||||||| Sbjct: 37908497 atatgcccgacaagttgcggagttctttgaatt 37908465 Score = 48.1 bits (24), Expect = 0.025 Identities = 57/68 (83%) Strand = Plus / Minus Query: 197 aggttcctgctctggtcttggattgtgaacctgacattgatttcaacagagacatacaag 256 ||||||||||||||||| | || || |||| |||||||||||| |||| || || ||| Sbjct: 37909735 aggttcctgctctggtcctcgactgcgaacatgacattgattttaacaaggatattgaag 37909676 Query: 257 ccaaacga 264 |||||||| Sbjct: 37909675 ccaaacga 37909668 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 tgaacctgacattgatttca 241 |||||||||||||||||||| Sbjct: 19249756 tgaacctgacattgatttca 19249775
>dbj|AP004669.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0491F11 Length = 152274 Score = 81.8 bits (41), Expect = 2e-12 Identities = 158/197 (80%) Strand = Plus / Minus Query: 4 ggtggtgttagccttgactacttacaaggtttgcatgagaaacatgagagctggctattt 63 |||||||||| ||||| ||| | | |||||||||||||||||||||||||||||| || Sbjct: 131359 ggtggtgttactcttgattaccttcgaggtttgcatgagaaacatgagagctggctgctt 131300 Query: 64 ccttcgaaaggaggaggcagtggtgtattatcagttagtcagctgcccacgcatatggat 123 ||||| |||||| ||| |||||||||||| || ||||| | || |||||||| Sbjct: 131299 ccttccaaaggacaaggtcctggtgtattatcggtcagtcaagttccagtccatatggag 131240 Query: 124 ggctccttgcctccaggaatacgggatcgtgtcttttacctggaaggagatcacatgcat 183 ||||| |||||||| | ||| | || || || || ||| | ||||||||||| |||||| Sbjct: 131239 ggctctttgcctccggatataagagaacgagtattctacttagaaggagatcatatgcat 131180 Query: 184 tctagcatccaaaaggt 200 ||||| ||||| ||||| Sbjct: 131179 tctagtatccagaaggt 131163 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 267 atatgcccagcaagttgcggagttctttgaatt 299 |||||||| ||||||||||||||||||||||| Sbjct: 129853 atatgcccgacaagttgcggagttctttgaatt 129821 Score = 48.1 bits (24), Expect = 0.025 Identities = 57/68 (83%) Strand = Plus / Minus Query: 197 aggttcctgctctggtcttggattgtgaacctgacattgatttcaacagagacatacaag 256 ||||||||||||||||| | || || |||| |||||||||||| |||| || || ||| Sbjct: 131091 aggttcctgctctggtcctcgactgcgaacatgacattgattttaacaaggatattgaag 131032 Query: 257 ccaaacga 264 |||||||| Sbjct: 131031 ccaaacga 131024
>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0648C09 Length = 107522 Score = 81.8 bits (41), Expect = 2e-12 Identities = 158/197 (80%) Strand = Plus / Minus Query: 4 ggtggtgttagccttgactacttacaaggtttgcatgagaaacatgagagctggctattt 63 |||||||||| ||||| ||| | | |||||||||||||||||||||||||||||| || Sbjct: 6279 ggtggtgttactcttgattaccttcgaggtttgcatgagaaacatgagagctggctgctt 6220 Query: 64 ccttcgaaaggaggaggcagtggtgtattatcagttagtcagctgcccacgcatatggat 123 ||||| |||||| ||| |||||||||||| || ||||| | || |||||||| Sbjct: 6219 ccttccaaaggacaaggtcctggtgtattatcggtcagtcaagttccagtccatatggag 6160 Query: 124 ggctccttgcctccaggaatacgggatcgtgtcttttacctggaaggagatcacatgcat 183 ||||| |||||||| | ||| | || || || || ||| | ||||||||||| |||||| Sbjct: 6159 ggctctttgcctccggatataagagaacgagtattctacttagaaggagatcatatgcat 6100 Query: 184 tctagcatccaaaaggt 200 ||||| ||||| ||||| Sbjct: 6099 tctagtatccagaaggt 6083 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 267 atatgcccagcaagttgcggagttctttgaatt 299 |||||||| ||||||||||||||||||||||| Sbjct: 4773 atatgcccgacaagttgcggagttctttgaatt 4741 Score = 48.1 bits (24), Expect = 0.025 Identities = 57/68 (83%) Strand = Plus / Minus Query: 197 aggttcctgctctggtcttggattgtgaacctgacattgatttcaacagagacatacaag 256 ||||||||||||||||| | || || |||| |||||||||||| |||| || || ||| Sbjct: 6011 aggttcctgctctggtcctcgactgcgaacatgacattgattttaacaaggatattgaag 5952 Query: 257 ccaaacga 264 |||||||| Sbjct: 5951 ccaaacga 5944
>gb|AC069273.4|AC069273 Arabidopsis thaliana chromosome 1 BAC F28P5 genomic sequence, complete sequence Length = 38629 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 151 cgtgtcttttacctggaaggagatcacatgcattctagcatccaaaaggt 200 |||||||||||| |||||||| |||| ||||||||||| ||||| ||||| Sbjct: 28765 cgtgtcttttacttggaaggaaatcatatgcattctagtatccagaaggt 28814
>dbj|AK131259.1| Homo sapiens cDNA FLJ16191 fis, clone BRTHA2013610, moderately similar to Arabidopsis thaliana deoxyguanosine kinase -related (At1g72040) mRNA Length = 1807 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 157 ttttacctggaaggagatcacatgcattctagcatccaaaaggttcctgctctggtcttg 216 ||||| ||||| || | |||||||||||| ||||| || |||||||||||| |||| || Sbjct: 1295 ttttatctggagggtggtcacatgcattcaagcattcagaaggttcctgctttggttctg 1354 Query: 217 gattgtgaacctgacattgatttca 241 || |||||||| | |||||||||| Sbjct: 1355 gactgtgaacccaatattgatttca 1379
>gb|AF514776.1| Lycopersicon esculentum dCK/dGK-like deoxyribonucleoside kinase mRNA, complete cds Length = 1098 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 136 ccaggaatacgggatcgtgtcttttacctggaaggagatcacatgcattctagcatccaa 195 |||| |||| |||||||||| ||||| |||||||| |||||||||| | || || ||| Sbjct: 763 ccagaaataagggatcgtgttttttatctggaaggcaatcacatgcacccgagtattcaa 822 Query: 196 aaggttcctgc 206 ||||||||||| Sbjct: 823 aaggttcctgc 833
>gb|AC137871.18| Mus musculus chromosome 15, clone RP23-41B9, complete sequence Length = 223529 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 332 agacaagcactgagaaggaccg 353 |||||||||||||||||||||| Sbjct: 164370 agacaagcactgagaaggaccg 164349
>dbj|AP006693.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT35C17, TM0399, complete sequence Length = 94919 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 209 tggtcttggattgtgaacctga 230 |||||||||||||||||||||| Sbjct: 46094 tggtcttggattgtgaacctga 46115
>gb|AC132097.3| Mus musculus BAC clone RP24-395K4 from chromosome 12, complete sequence Length = 149176 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 attctagcatccaaaaggttc 202 ||||||||||||||||||||| Sbjct: 55864 attctagcatccaaaaggttc 55884
>dbj|AP006630.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT12F12, TM0028a, complete sequence Length = 60126 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 agcatccaaaaggttcctgct 207 ||||||||||||||||||||| Sbjct: 48504 agcatccaaaaggttcctgct 48524
>ref|NM_193202.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2055 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 tgaacctgacattgatttca 241 |||||||||||||||||||| Sbjct: 1377 tgaacctgacattgatttca 1396
>gb|AC120791.13| Mus musculus chromosome 7, clone RP23-56I4, complete sequence Length = 246249 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 tggctatttccttcgaaaggagga 78 ||||||||||||| |||||||||| Sbjct: 238881 tggctatttccttagaaaggagga 238858
>gb|AC123030.4| Mus musculus BAC clone RP24-573I5 from chromosome 7, complete sequence Length = 173971 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 tggctatttccttcgaaaggagga 78 ||||||||||||| |||||||||| Sbjct: 50975 tggctatttccttagaaaggagga 50952
>emb|BX470263.9| Zebrafish DNA sequence from clone DKEY-15P9 in linkage group 9, complete sequence Length = 176022 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 aggaggcagtggtgtattat 94 |||||||||||||||||||| Sbjct: 53317 aggaggcagtggtgtattat 53298
>emb|BX324162.8| Zebrafish DNA sequence from clone DKEY-95O3 in linkage group 15, complete sequence Length = 155540 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 199 gttcctgctctggtcttggattgt 222 |||||||||||||||||| ||||| Sbjct: 1522 gttcctgctctggtcttgaattgt 1545
>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1619_F12 Length = 133028 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 tgaacctgacattgatttca 241 |||||||||||||||||||| Sbjct: 69377 tgaacctgacattgatttca 69396
>emb|AJ329461.1|HSA329461 Homo sapiens genomic sequence surrounding NotI site, clone NR5-GC23C Length = 680 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 gaaaggaggaggcagtggtg 88 |||||||||||||||||||| Sbjct: 321 gaaaggaggaggcagtggtg 340
>dbj|AK060594.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-F04, full insert sequence Length = 1112 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 tgaacctgacattgatttca 241 |||||||||||||||||||| Sbjct: 284 tgaacctgacattgatttca 303
>emb|AL157871.5|CNS01RG9 Human chromosome 14 DNA sequence BAC R-638I2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 180688 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 tttcaacagagacatacaag 256 |||||||||||||||||||| Sbjct: 31770 tttcaacagagacatacaag 31789
>emb|AL133523.5|CNS01DVB Human chromosome 14 DNA sequence BAC R-775G15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 173039 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 tttcaacagagacatacaag 256 |||||||||||||||||||| Sbjct: 161324 tttcaacagagacatacaag 161343 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,576,825 Number of Sequences: 3902068 Number of extensions: 3576825 Number of successful extensions: 59740 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 59617 Number of HSP's gapped (non-prelim): 124 length of query: 446 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 424 effective length of database: 17,147,199,772 effective search space: 7270412703328 effective search space used: 7270412703328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)