ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal8p20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 466 bits (235), Expect = e-128 Identities = 480/559 (85%), Gaps = 7/559 (1%) Strand = Plus / Minus Query: 53 ggaacacatttggagaaccccaaaaagagcagcaccttagtttacaagagggcggggcag 112 |||||||||| || ||| || || ||| |||||||||||||||||||||||| || Sbjct: 8654294 ggaacacattcagaaaactccgaacagaacagcaccttagtttacaagagggc-----ag 8654240 Query: 113 gagagctaactaggcatcttcacagctacaaaggggatacacaggttggtgctcaagaac 172 |||| ||| |||| ||||| || ||| ||||||||||||||| || ||||| || | Sbjct: 8654239 gaga-ctatctagagatctttgcacctagaaaggggatacacagattcatgctcgagcaa 8654181 Query: 173 tcggcgccgatgctcgaacaatcaagcatcagtttccagcttcttagaattcaaattaaa 232 ||| | || | | ||||| |||||| ||||| ||| ||||||||||||| |||||||| Sbjct: 8654180 tcgacaccaaagatcgaatgatcaagtatcagcttcgagcttcttagaatgtaaattaaa 8654121 Query: 233 gcacatgcacttgtctataagagcctccgattcgttgccgtattctttgaacctgtactc 292 |||||||||||| || ||||||||||| || ||||| || |||||||||||||||||||| Sbjct: 8654120 gcacatgcacttatcgataagagcctcagactcgttaccatattctttgaacctgtactc 8654061 Query: 293 ctccaacttgaaggccgatggaaccttcccttcactgtagcaacggttacacaagctgaa 352 ||||||||||| || |||||||||||||||||||||||||| || || |||||||| || Sbjct: 8654060 atccaacttgaatgctgatggaaccttcccttcactgtagcatcgattgcacaagctaaa 8654001 Query: 353 ggagtgttttgtttccttgaaccgtgaaccgatgataggatatctgcatatggagcaggt 412 |||||| ||||| |||||||| || ||||| ||||||||||||| ||| || |||||||| Sbjct: 8654000 ggagtgctttgtctccttgaatcgggaaccaatgataggatatcggcaaattgagcaggt 8653941 Query: 413 gtggctgccgtggcgaacatgatcactgtcttcaagcttcaccaatgtggttagaattcc 472 ||||| |||||| |||| ||||| ||||| |||||||||||||||||| |||| ||||| Sbjct: 8653940 gtggcggccgtgacgaatgtgatcgctgtcctcaagcttcaccaatgtgcttaggattcc 8653881 Query: 473 aaatccccaatcaggatcattgaacatttcaaggaactctgtgtacgataccatggtagg 532 |||||||||||| ||||||||||||||||| |||||||| ||||| |||||||| || || Sbjct: 8653880 aaatccccaatcgggatcattgaacatttcgaggaactccgtgtatgataccatagtggg 8653821 Query: 533 gtcagactctccatgcatttcaagcatgtcgctagccccatgtgtggggtatgtaaacag 592 ||||||||| |||||||||||||||||||||||||||||||| || |||||| ||||||| Sbjct: 8653820 gtcagactccccatgcatttcaagcatgtcgctagccccatgggt-gggtatataaacag 8653762 Query: 593 cgcgaagaagtttaatgta 611 | ||||||||||| ||||| Sbjct: 8653761 cacgaagaagtttgatgta 8653743
>gb|AC135206.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1041F02, complete sequence Length = 137327 Score = 466 bits (235), Expect = e-128 Identities = 480/559 (85%), Gaps = 7/559 (1%) Strand = Plus / Minus Query: 53 ggaacacatttggagaaccccaaaaagagcagcaccttagtttacaagagggcggggcag 112 |||||||||| || ||| || || ||| |||||||||||||||||||||||| || Sbjct: 135266 ggaacacattcagaaaactccgaacagaacagcaccttagtttacaagagggc-----ag 135212 Query: 113 gagagctaactaggcatcttcacagctacaaaggggatacacaggttggtgctcaagaac 172 |||| ||| |||| ||||| || ||| ||||||||||||||| || ||||| || | Sbjct: 135211 gaga-ctatctagagatctttgcacctagaaaggggatacacagattcatgctcgagcaa 135153 Query: 173 tcggcgccgatgctcgaacaatcaagcatcagtttccagcttcttagaattcaaattaaa 232 ||| | || | | ||||| |||||| ||||| ||| ||||||||||||| |||||||| Sbjct: 135152 tcgacaccaaagatcgaatgatcaagtatcagcttcgagcttcttagaatgtaaattaaa 135093 Query: 233 gcacatgcacttgtctataagagcctccgattcgttgccgtattctttgaacctgtactc 292 |||||||||||| || ||||||||||| || ||||| || |||||||||||||||||||| Sbjct: 135092 gcacatgcacttatcgataagagcctcagactcgttaccatattctttgaacctgtactc 135033 Query: 293 ctccaacttgaaggccgatggaaccttcccttcactgtagcaacggttacacaagctgaa 352 ||||||||||| || |||||||||||||||||||||||||| || || |||||||| || Sbjct: 135032 atccaacttgaatgctgatggaaccttcccttcactgtagcatcgattgcacaagctaaa 134973 Query: 353 ggagtgttttgtttccttgaaccgtgaaccgatgataggatatctgcatatggagcaggt 412 |||||| ||||| |||||||| || ||||| ||||||||||||| ||| || |||||||| Sbjct: 134972 ggagtgctttgtctccttgaatcgggaaccaatgataggatatcggcaaattgagcaggt 134913 Query: 413 gtggctgccgtggcgaacatgatcactgtcttcaagcttcaccaatgtggttagaattcc 472 ||||| |||||| |||| ||||| ||||| |||||||||||||||||| |||| ||||| Sbjct: 134912 gtggcggccgtgacgaatgtgatcgctgtcctcaagcttcaccaatgtgcttaggattcc 134853 Query: 473 aaatccccaatcaggatcattgaacatttcaaggaactctgtgtacgataccatggtagg 532 |||||||||||| ||||||||||||||||| |||||||| ||||| |||||||| || || Sbjct: 134852 aaatccccaatcgggatcattgaacatttcgaggaactccgtgtatgataccatagtggg 134793 Query: 533 gtcagactctccatgcatttcaagcatgtcgctagccccatgtgtggggtatgtaaacag 592 ||||||||| |||||||||||||||||||||||||||||||| || |||||| ||||||| Sbjct: 134792 gtcagactccccatgcatttcaagcatgtcgctagccccatgggt-gggtatataaacag 134734 Query: 593 cgcgaagaagtttaatgta 611 | ||||||||||| ||||| Sbjct: 134733 cacgaagaagtttgatgta 134715
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 466 bits (235), Expect = e-128 Identities = 480/559 (85%), Gaps = 7/559 (1%) Strand = Plus / Minus Query: 53 ggaacacatttggagaaccccaaaaagagcagcaccttagtttacaagagggcggggcag 112 |||||||||| || ||| || || ||| |||||||||||||||||||||||| || Sbjct: 8652129 ggaacacattcagaaaactccgaacagaacagcaccttagtttacaagagggc-----ag 8652075 Query: 113 gagagctaactaggcatcttcacagctacaaaggggatacacaggttggtgctcaagaac 172 |||| ||| |||| ||||| || ||| ||||||||||||||| || ||||| || | Sbjct: 8652074 gaga-ctatctagagatctttgcacctagaaaggggatacacagattcatgctcgagcaa 8652016 Query: 173 tcggcgccgatgctcgaacaatcaagcatcagtttccagcttcttagaattcaaattaaa 232 ||| | || | | ||||| |||||| ||||| ||| ||||||||||||| |||||||| Sbjct: 8652015 tcgacaccaaagatcgaatgatcaagtatcagcttcgagcttcttagaatgtaaattaaa 8651956 Query: 233 gcacatgcacttgtctataagagcctccgattcgttgccgtattctttgaacctgtactc 292 |||||||||||| || ||||||||||| || ||||| || |||||||||||||||||||| Sbjct: 8651955 gcacatgcacttatcgataagagcctcagactcgttaccatattctttgaacctgtactc 8651896 Query: 293 ctccaacttgaaggccgatggaaccttcccttcactgtagcaacggttacacaagctgaa 352 ||||||||||| || |||||||||||||||||||||||||| || || |||||||| || Sbjct: 8651895 atccaacttgaatgctgatggaaccttcccttcactgtagcatcgattgcacaagctaaa 8651836 Query: 353 ggagtgttttgtttccttgaaccgtgaaccgatgataggatatctgcatatggagcaggt 412 |||||| ||||| |||||||| || ||||| ||||||||||||| ||| || |||||||| Sbjct: 8651835 ggagtgctttgtctccttgaatcgggaaccaatgataggatatcggcaaattgagcaggt 8651776 Query: 413 gtggctgccgtggcgaacatgatcactgtcttcaagcttcaccaatgtggttagaattcc 472 ||||| |||||| |||| ||||| ||||| |||||||||||||||||| |||| ||||| Sbjct: 8651775 gtggcggccgtgacgaatgtgatcgctgtcctcaagcttcaccaatgtgcttaggattcc 8651716 Query: 473 aaatccccaatcaggatcattgaacatttcaaggaactctgtgtacgataccatggtagg 532 |||||||||||| ||||||||||||||||| |||||||| ||||| |||||||| || || Sbjct: 8651715 aaatccccaatcgggatcattgaacatttcgaggaactccgtgtatgataccatagtggg 8651656 Query: 533 gtcagactctccatgcatttcaagcatgtcgctagccccatgtgtggggtatgtaaacag 592 ||||||||| |||||||||||||||||||||||||||||||| || |||||| ||||||| Sbjct: 8651655 gtcagactccccatgcatttcaagcatgtcgctagccccatgggt-gggtatataaacag 8651597 Query: 593 cgcgaagaagtttaatgta 611 | ||||||||||| ||||| Sbjct: 8651596 cacgaagaagtttgatgta 8651578
>dbj|AK121215.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089O12, full insert sequence Length = 3172 Score = 444 bits (224), Expect = e-121 Identities = 478/559 (85%), Gaps = 9/559 (1%) Strand = Plus / Minus Query: 53 ggaacacatttggagaaccccaaaaagagcagcaccttagtttacaagagggcggggcag 112 |||||||||| || ||| || || ||| |||||||||||||||||||||||| || Sbjct: 2857 ggaacacattcagaaaactccgaacagaacagcaccttagtttacaagagggc-----ag 2803 Query: 113 gagagctaactaggcatcttcacagctacaaaggggatacacaggttggtgctcaagaac 172 |||| ||| |||| ||||| || ||| ||||||||||||||| || ||||| || | Sbjct: 2802 gaga-ctatctagagatctttgcacctagaaaggggatacacagattcatgctcgagcaa 2744 Query: 173 tcggcgccgatgctcgaacaatcaagcatcagtttccagcttcttagaattcaaattaaa 232 ||| | || | | ||||| |||||| ||||| ||| ||||||||||||| |||||||| Sbjct: 2743 tcgacaccaaagatcgaatgatcaagtatcagcttcgagcttcttagaatgtaaattaaa 2684 Query: 233 gcacatgcacttgtctataagagcctccgattcgttgccgtattctttgaacctgtactc 292 |||||||||||| || ||||||||||| || ||||| || |||||||||||||||||||| Sbjct: 2683 gcacatgcacttatcgataagagcctcagactcgttaccatattctttgaacctgtactc 2624 Query: 293 ctccaacttgaaggccgatggaaccttcccttcactgtagcaacggttacacaagctgaa 352 ||||||||||| || |||||||||||||||||||||||||| || || |||||||| || Sbjct: 2623 atccaacttgaatgctgatggaaccttcccttcactgtagcatcgattgcacaagctaaa 2564 Query: 353 ggagtgttttgtttccttgaaccgtgaaccgatgataggatatctgcatatggagcaggt 412 |||||| ||||| |||||||| || ||||| ||||||||||||| ||| || |||||||| Sbjct: 2563 ggagtgctttgtctccttgaatcgggaaccaatgataggatatcggcaaattgagcaggt 2504 Query: 413 gtggctgccgtggcgaacatgatcactgtcttcaagcttcaccaatgtggttagaattcc 472 ||||| |||||| |||| ||||| ||||| |||||||||||||||||| |||| ||||| Sbjct: 2503 gtggcggccgtgacgaatgtgatcgctgtcctcaagcttcaccaatgtgcttaggattcc 2444 Query: 473 aaatccccaatcaggatcattgaacatttcaaggaactctgtgtacgataccatggtagg 532 |||||||||||| ||||||||||||||||| |||||||| ||||| ||||||| || | Sbjct: 2443 aaatccccaatcgggatcattgaacatttcgaggaactccgtgtatgatacca--gtgtg 2386 Query: 533 gtcagactctccatgcatttcaagcatgtcgctagccccatgtgtggggtatgtaaacag 592 ||||||||| |||||||||||||||||||||||||||||||| || |||||| ||||||| Sbjct: 2385 gtcagactccccatgcatttcaagcatgtcgctagccccatgggt-gggtatataaacag 2327 Query: 593 cgcgaagaagtttaatgta 611 | ||||||||||| ||||| Sbjct: 2326 cacgaagaagtttgatgta 2308
>ref|XM_755523.1| Ustilago maydis 521 hypothetical protein (UM04469.1) partial mRNA Length = 3231 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 616 agcgcatcactcctcctgatc 636 ||||||||||||||||||||| Sbjct: 587 agcgcatcactcctcctgatc 607
>gb|AY986977.1| Xanthomonas campestris pv. pelargonii phage Xp15, complete genome Length = 55770 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 172 ctcggcgccgatgctcgaaca 192 ||||||||||||||||||||| Sbjct: 33649 ctcggcgccgatgctcgaaca 33629
>gb|AY848949.1| Silene tatarica clone ST21 microsatellite sequence Length = 624 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 atggagcaggtgtggctgcc 421 |||||||||||||||||||| Sbjct: 253 atggagcaggtgtggctgcc 234
>gb|AC141583.3| Rattus norvegicus 9 BAC CH230-486H15 (Children's Hospital Oakland Research Institute) complete sequence Length = 132946 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 atctgcatatggagcaggtg 413 |||||||||||||||||||| Sbjct: 69289 atctgcatatggagcaggtg 69308
>gb|AC107179.5| Rattus norvegicus 9 BAC CH230-155P21 (Children's Hospital Oakland Research Institute) complete sequence Length = 204235 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 atctgcatatggagcaggtg 413 |||||||||||||||||||| Sbjct: 195957 atctgcatatggagcaggtg 195976
>ref|XM_750905.1| Aspergillus fumigatus Af293 N,N-dimethylglycine oxidase (Afu2g16610) partial mRNA Length = 1197 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 taagagcctccgattcgttg 269 |||||||||||||||||||| Sbjct: 199 taagagcctccgattcgttg 180
>emb|Z81000.2|HS67D6 Human DNA sequence from clone CITF22-67D6 on chromosome 22 Contains STSs and GSSs, complete sequence Length = 37160 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 agctaacagcatagggtcgg 54 |||||||||||||||||||| Sbjct: 14030 agctaacagcatagggtcgg 14011
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 aagagggcggggcaggagag 117 |||||||||||||||||||| Sbjct: 2836930 aagagggcggggcaggagag 2836911
>gb|AC024230.5| Homo sapiens BAC clone RP11-96B10 from 4, complete sequence Length = 160269 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 acatgatcactgtcttcaag 448 |||||||||||||||||||| Sbjct: 62367 acatgatcactgtcttcaag 62386
>gb|AC154524.2| Mus musculus BAC clone RP24-68D23 from chromosome 16, complete sequence Length = 252926 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 tctgcatatggagcaggtgt 414 |||||||||||||||||||| Sbjct: 141100 tctgcatatggagcaggtgt 141119
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 acttggaacgagcaatagct 38 |||||||||||||||||||| Sbjct: 953066 acttggaacgagcaatagct 953085 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,404,090 Number of Sequences: 3902068 Number of extensions: 5404090 Number of successful extensions: 104957 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104834 Number of HSP's gapped (non-prelim): 118 length of query: 643 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 620 effective length of database: 17,143,297,704 effective search space: 10628844576480 effective search space used: 10628844576480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
