Clone Information

BLAST Search Result

Clone Name	bags10j04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CK5P1_ARATH (Q8H0V1) CDK5RAP1-like protein	302	6e-82
2	CK5P1_RAT (Q9JLH6) CDK5 regulatory subunit-associated protein 1 ...	239	6e-63
3	CK5P1_MOUSE (Q8BTW8) CDK5 regulatory subunit-associated protein ...	234	1e-61
4	CK5P1_HUMAN (Q96SZ6) CDK5 regulatory subunit-associated protein ...	223	4e-58
5	CK5P1_DROME (Q9VGZ1) CDK5RAP1-like protein	218	8e-57
6	CK5P1_CAEEL (Q09316) CDK5RAP1-like protein	199	7e-51
7	Y754_TREPA (O83735) Hypothetical UPF0004 protein TP0754	140	3e-33
8	Y269_HELPJ (Q9ZMG6) Hypothetical UPF0004 protein jhp_0254	127	3e-29
9	Y2752_MYCBO (P67086) Hypothetical UPF0004 protein Mb2752c	126	4e-29
10	Y2733_MYCTU (P67085) Hypothetical UPF0004 protein Rv2733c/MT2803	126	4e-29
11	Y1001_PASMU (Q9L699) Hypothetical UPF0004 protein PM1001	126	4e-29
12	YMCB_BACSU (O31778) Hypothetical UPF0004 protein ymcB	126	4e-29
13	Y269_HELPY (P56131) Hypothetical UPF0004 protein HP0269	126	6e-29
14	Y284_AQUAE (O66638) Hypothetical UPF0004 protein aq_284	125	1e-28
15	Y019_HAEIN (Q57163) Hypothetical UPF0004 protein HI0019	125	1e-28
16	Y392_BUCBP (Q89AC2) Hypothetical UPF0004 protein bbp_392	123	5e-28
17	YLEA_ECOLI (P0AEI1) Hypothetical UPF0004 protein yleA	122	6e-28
18	YLEA_ECOL6 (P0AEI2) Hypothetical UPF0004 protein yleA	122	6e-28
19	YLEA_ECO57 (P0AEI3) Hypothetical UPF0004 protein yleA	122	6e-28
20	Y989_MYCLE (Q49842) Hypothetical UPF0004 protein ML0989	120	4e-27
21	Y3980_PSEAE (Q51470) Hypothetical UPF0004 protein PA3980	119	7e-27
22	Y441_BUCAI (P57516) Hypothetical UPF0004 protein BU441	118	1e-26
23	Y426_BUCAP (Q8K9C2) Hypothetical UPF0004 protein BUsg426	117	3e-26
24	Y996_SYNY3 (P73127) Hypothetical UPF0004 protein sll0996	115	1e-25
25	Y808_RICPR (Q9ZCE8) Hypothetical UPF0004 protein RP808	111	1e-24
26	Y16R_MYCIO (Q49573) Hypothetical UPF0004 protein in 16S RNA 5're...	91	3e-18
27	YQEV_BACSU (P54462) Hypothetical UPF0004 protein yqeV	89	1e-17
28	Y474_AQUAE (O66772) Hypothetical UPF0004 protein aq_474	86	6e-17
29	Y477_CHLPN (Q9Z874) Hypothetical UPF0004 protein CPn_0477/CP0277...	86	1e-16
30	Y416_RICPR (Q9ZDB6) Hypothetical UPF0004 protein RP416	85	1e-16
31	Y1571_PASMU (Q9CKN9) Hypothetical UPF0004 protein PM1571	82	9e-16
32	Y830_THEMA (Q9WZT7) Hypothetical UPF0004 protein TM0830	79	1e-14
33	Y269_TREPA (O83293) Hypothetical UPF0004 protein TP0269	77	5e-14
34	Y1729_PYRAB (Q9UXX9) Hypothetical UPF0004 protein PYRAB17290	76	9e-14
35	Y1247_ARCFU (O29021) Hypothetical UPF0004 protein AF1247	75	1e-13
36	YLIG_ECOLI (P0AEI4) Hypothetical UPF0004 protein yliG	74	3e-13
37	YLIG_ECO57 (P0AEI5) Hypothetical UPF0004 protein yliG	74	3e-13
38	Y826_METTH (O26914) Hypothetical UPF0004 protein MTH826	73	6e-13
39	Y867_METJA (Q58277) Hypothetical UPF0004 protein MJ0867	70	4e-12
40	Y1875_PYRHO (O59545) Hypothetical UPF0004 protein PH1875	69	8e-12
41	Y082_SYNY3 (Q55803) Hypothetical UPF0004 protein slr0082	64	3e-10
42	Y849_AQUAE (O67016) Hypothetical UPF0004 protein aq_849	60	4e-09
43	Y285_HELPJ (Q9ZMF0) Hypothetical UPF0004 protein jhp_0270	59	1e-08
44	Y285_HELPY (P56130) Hypothetical UPF0004 protein HP0285	57	3e-08
45	Y865_METJA (Q58275) Hypothetical UPF0004 protein MJ0865	40	0.005
46	Y1487_METJA (Q58882) Hypothetical protein MJ1487	38	0.020
47	BARA_SHIFL (P59342) Signal transduction histidine-protein kinase...	35	0.17
48	BARA_ECOLI (P0AEC5) Signal transduction histidine-protein kinase...	35	0.22
49	BARA_ECOL6 (P0AEC6) Signal transduction histidine-protein kinase...	35	0.22
50	BARA_ECO57 (P0AEC7) Signal transduction histidine-protein kinase...	35	0.22
51	METE_AQUAE (O67606) 5-methyltetrahydropteroyltriglutamate--homoc...	32	1.9
52	YDTE_SCHPO (O14219) Hypothetical protein C6B12.14c in chromosome I	31	3.2
53	LEU3_BUCUO (Q9EVI1) 3-isopropylmalate dehydrogenase (EC 1.1.1.85...	30	4.2
54	GLGB_COREF (Q8FQ12) 1,4-alpha-glucan branching enzyme (EC 2.4.1....	30	4.2
55	SYD_THETH (P36419) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar...	30	4.2
56	SYD_THET8 (Q5SKD2) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar...	30	4.2
57	SYD_THET2 (Q72KH6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar...	30	4.2
58	PK3CD_HUMAN (O00329) Phosphatidylinositol-4,5-bisphosphate 3-kin...	30	5.4
59	IKKE_MOUSE (Q9R0T8) Inhibitor of nuclear factor kappa-B kinase e...	30	7.1
60	PHOU_XYLFA (Q9PBJ9) Phosphate transport system protein phoU	30	7.1
61	H2B_ACRFO (P35067) Histone H2B	29	9.3
62	HNRL1_MOUSE (Q8VDM6) Heterogeneous nuclear ribonucleoprotein U-l...	29	9.3
63	DHE2_PEPAS (P28997) NAD-specific glutamate dehydrogenase (EC 1.4...	29	9.3
64	PHOU_XYLFT (Q87C87) Phosphate transport system protein phoU	29	9.3

>CK5P1_ARATH (Q8H0V1) CDK5RAP1-like protein|
          Length = 640

 Score =  302 bits (773), Expect = 6e-82
 Identities = 143/202 (70%), Positives = 168/202 (83%)
 Frame = +2

Query: 2   SDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQN 181
           S+NS+TAFVSVMRGCNNMC+FCIVPFT                  LW +GVKEV LLGQN
Sbjct: 282 SENSITAFVSVMRGCNNMCAFCIVPFTRGRERSRPVESIIREVGELWESGVKEVTLLGQN 341

Query: 182 VNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPH 361
           VNSYND S   + E G NW+ SEGFSSRCKVKN GLRFADLLD+LS+E+PEMRFRFTSPH
Sbjct: 342 VNSYNDDSA--DRESGANWEYSEGFSSRCKVKNMGLRFADLLDRLSVEFPEMRFRFTSPH 399

Query: 362 PKDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDV 541
           PKD+PDELLYLMRDRHNIC LIHLPAQSG++ +LE+M+RGYTREAYL+LV+KIR++IPDV
Sbjct: 400 PKDYPDELLYLMRDRHNICNLIHLPAQSGNSRILEQMRRGYTREAYLDLVKKIRSIIPDV 459

Query: 542 GLSSDFISGFCEETEDDHADTL 607
            ++SDFI+GFC ETE++H +TL
Sbjct: 460 AITSDFITGFCGETEEEHQETL 481

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>CK5P1_RAT (Q9JLH6) CDK5 regulatory subunit-associated protein 1 (CDK5|
           activator-binding protein C42)
          Length = 586

 Score =  239 bits (609), Expect = 6e-63
 Identities = 122/202 (60%), Positives = 144/202 (71%)
 Frame = +2

Query: 2   SDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQN 181
           S ++ +AFVS+MRGC+NMCS+CIVPFT                  L   G+KEV LLGQN
Sbjct: 241 SPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILDEVRKLSEQGLKEVTLLGQN 300

Query: 182 VNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPH 361
           VNS+ D SEV+    G    LS GF++  K K  GLRF+ LLDQ+S   PEMR RFTSPH
Sbjct: 301 VNSFRDNSEVQFSSTGSA-NLSRGFTTNYKPKQGGLRFSHLLDQVSRIDPEMRIRFTSPH 359

Query: 362 PKDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDV 541
           PKDFPDE+L L+R+RHNICK IHLPAQSGS+ VLE M+RGY+REAY+ LV  IR  IP V
Sbjct: 360 PKDFPDEVLQLIRERHNICKQIHLPAQSGSSRVLEAMRRGYSREAYVALVHHIREAIPGV 419

Query: 542 GLSSDFISGFCEETEDDHADTL 607
           GLSSDFI+GFC ETEDDH  T+
Sbjct: 420 GLSSDFITGFCGETEDDHLQTV 441

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>CK5P1_MOUSE (Q8BTW8) CDK5 regulatory subunit-associated protein 1 (CDK5|
           activator-binding protein C42)
          Length = 588

 Score =  234 bits (598), Expect = 1e-61
 Identities = 119/202 (58%), Positives = 143/202 (70%)
 Frame = +2

Query: 2   SDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQN 181
           S ++ +AFVS+MRGC+NMCS+CIVPFT                  L   G+KEV LLGQN
Sbjct: 243 SPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILDEVRKLSEQGLKEVTLLGQN 302

Query: 182 VNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPH 361
           VNS+ D SEV+    G    LS GF++  K K  GLRF+ LLDQ+S   PEMR RFTSPH
Sbjct: 303 VNSFRDNSEVQFNNAGSA-NLSRGFTTNYKPKQGGLRFSHLLDQVSRIDPEMRIRFTSPH 361

Query: 362 PKDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDV 541
           PKDFPDE+L L+R+RHNICK IHLPAQSGS+ VL+ M+RGY+REAY+ LV  +R  IP V
Sbjct: 362 PKDFPDEVLQLIRERHNICKQIHLPAQSGSSRVLDAMRRGYSREAYVALVHHVRETIPGV 421

Query: 542 GLSSDFISGFCEETEDDHADTL 607
            LSSDFI+GFC ETEDDH  T+
Sbjct: 422 SLSSDFITGFCGETEDDHRQTV 443

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>CK5P1_HUMAN (Q96SZ6) CDK5 regulatory subunit-associated protein 1 (CDK5|
           activator-binding protein C42)
          Length = 601

 Score =  223 bits (567), Expect = 4e-58
 Identities = 119/216 (55%), Positives = 141/216 (65%), Gaps = 14/216 (6%)
 Frame = +2

Query: 2   SDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXL-------------- 139
           S ++ +AFVS+MRGC+NMCS+CIVPFT                  L              
Sbjct: 244 SASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQVFLPPRPPKVL 303

Query: 140 WYAGVKEVMLLGQNVNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLS 319
              G+KEV LLGQNVNS+ D SEV+         LS GF++  K K  GLRFA LLDQ+S
Sbjct: 304 GLQGLKEVTLLGQNVNSFRDNSEVQ-FNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVS 362

Query: 320 LEYPEMRFRFTSPHPKDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAY 499
              PEMR RFTSPHPKDFPDE+L L+ +R NICK IHLPAQSGS+ VLE M+RGY+REAY
Sbjct: 363 RVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAY 422

Query: 500 LELVQKIRNVIPDVGLSSDFISGFCEETEDDHADTL 607
           +ELV  IR  IP V LSSDFI+GFC ETE+DH  T+
Sbjct: 423 VELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTV 458

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>CK5P1_DROME (Q9VGZ1) CDK5RAP1-like protein|
          Length = 583

 Score =  218 bits (556), Expect = 8e-57
 Identities = 113/202 (55%), Positives = 139/202 (68%)
 Frame = +2

Query: 2   SDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQN 181
           +  S TAFVS+MRGC+NMC++CIVPFT                  L   GVKEV LLGQN
Sbjct: 237 NSESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASIVAEVKALAEQGVKEVTLLGQN 296

Query: 182 VNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPH 361
           VNSY D +  EE +  K   +  GFS+  K K  G  FA LL  ++   P+MR RFTSPH
Sbjct: 297 VNSYRDRTAQEEQDSLKATPVP-GFSTVYKPKTGGTPFAALLRSVAQAVPDMRIRFTSPH 355

Query: 362 PKDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDV 541
           PKDF DE+L ++RD  N+CK +HLPAQSG+T+VLERM+RGY+REAYLELVQ IR  +P+V
Sbjct: 356 PKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLERMRRGYSREAYLELVQHIRQFLPNV 415

Query: 542 GLSSDFISGFCEETEDDHADTL 607
           GLSSDFI GFC ETE++  DT+
Sbjct: 416 GLSSDFICGFCGETEEEFQDTV 437

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>CK5P1_CAEEL (Q09316) CDK5RAP1-like protein|
          Length = 547

 Score =  199 bits (505), Expect = 7e-51
 Identities = 101/201 (50%), Positives = 134/201 (66%), Gaps = 2/201 (0%)
 Frame = +2

Query: 11  SVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNS 190
           S TAF+S+MRGC+NMC++C+VPFT                  L   G K+V LLGQNVNS
Sbjct: 221 SKTAFISIMRGCDNMCTYCVVPFTRGRERSRPIESIVEEVQRLRDQGYKQVTLLGQNVNS 280

Query: 191 YNDTSEVE-ELEPGKNWQ-LSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHP 364
           Y D + ++  + P  + +    GF +  K K+ GL F  LL++++   P++RFRFTSPHP
Sbjct: 281 YRDMTSMDFSMAPSTSQEDRVPGFKTVYKPKSGGLTFTTLLEKVADAAPDIRFRFTSPHP 340

Query: 365 KDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVG 544
           KDFP +L+ L+  R N+CK +HLPAQSG  E LERM+RGYTR+ YL LV  IR+V+P V 
Sbjct: 341 KDFPMQLIELIASRPNLCKQLHLPAQSGDDETLERMERGYTRDLYLRLVDDIRHVLPSVS 400

Query: 545 LSSDFISGFCEETEDDHADTL 607
           L+SDFI+GFC ETE  H +TL
Sbjct: 401 LTSDFIAGFCGETEQAHQNTL 421

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>Y754_TREPA (O83735) Hypothetical UPF0004 protein TP0754|
          Length = 456

 Score =  140 bits (353), Expect = 3e-33
 Identities = 79/202 (39%), Positives = 105/202 (51%)
 Frame = +2

Query: 2   SDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQN 181
           S+ S  +F+ +M GCNN CSFCIVP+                   L   GV+E+ LLGQN
Sbjct: 148 SEGSFQSFIPIMNGCNNFCSFCIVPYVRGREISRDLDAILQEVDVLSEKGVREITLLGQN 207

Query: 182 VNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPH 361
           VNSY        +      QL      RC+VK          DQ+         RF S H
Sbjct: 208 VNSYRGRDREGNIVTFP--QLLRHLVRRCEVK----------DQIKW------IRFVSSH 249

Query: 362 PKDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDV 541
           PKD  D+L+  +     +C+L+HLP Q G+  VL+RM+R YTRE YL LV K++  +P+V
Sbjct: 250 PKDLSDDLIATIAQESRLCRLVHLPVQHGANGVLKRMRRSYTREQYLSLVGKLKASVPNV 309

Query: 542 GLSSDFISGFCEETEDDHADTL 607
            LS+D + GF  ETE+D   TL
Sbjct: 310 ALSTDILIGFPGETEEDFEQTL 331

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>Y269_HELPJ (Q9ZMG6) Hypothetical UPF0004 protein jhp_0254|
          Length = 437

 Score =  127 bits (318), Expect = 3e-29
 Identities = 70/198 (35%), Positives = 103/198 (52%)
 Frame = +2

Query: 14  VTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 193
           + + +++  GC+  C++CIVP T                  L   G KE+MLLGQNVN+Y
Sbjct: 138 IRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAEKLANNGTKELMLLGQNVNNY 197

Query: 194 NDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDF 373
                 E  + G                     F+DLLD+LS      R RFTSPHP   
Sbjct: 198 GVRFSSEHAKVG---------------------FSDLLDKLSEIQGIERIRFTSPHPLHM 236

Query: 374 PDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSS 553
            D  L        +CK IH+P QSGS+ VL+ M+RGY++E +L  V++++ ++P+VG+S+
Sbjct: 237 NDAFLERFAQNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEVGIST 296

Query: 554 DFISGFCEETEDDHADTL 607
           D I GF  E++ D  DT+
Sbjct: 297 DIIVGFPNESDKDFEDTM 314

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>Y2752_MYCBO (P67086) Hypothetical UPF0004 protein Mb2752c|
          Length = 512

 Score =  126 bits (317), Expect = 4e-29
 Identities = 73/201 (36%), Positives = 102/201 (50%)
 Frame = +2

Query: 5   DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNV 184
           +++  A+VS+  GCNN C+FCIVP                    L   GV EV LLGQNV
Sbjct: 165 ESAYAAWVSISVGCNNSCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNV 224

Query: 185 NSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHP 364
           N+Y  +                 F+     +N G  FA+LL          R RFTSPHP
Sbjct: 225 NAYGVS-----------------FADPALPRNRGA-FAELLRACGDIDGLERVRFTSPHP 266

Query: 365 KDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVG 544
            +F D+++  M    N+C  +H+P QSGS  +L  M+R Y  E YL +++++R  IP   
Sbjct: 267 AEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYLGIIERVRAAIPHAA 326

Query: 545 LSSDFISGFCEETEDDHADTL 607
           +++D I GF  ETE+D A TL
Sbjct: 327 ITTDLIVGFPGETEEDFAATL 347

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>Y2733_MYCTU (P67085) Hypothetical UPF0004 protein Rv2733c/MT2803|
          Length = 512

 Score =  126 bits (317), Expect = 4e-29
 Identities = 73/201 (36%), Positives = 102/201 (50%)
 Frame = +2

Query: 5   DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNV 184
           +++  A+VS+  GCNN C+FCIVP                    L   GV EV LLGQNV
Sbjct: 165 ESAYAAWVSISVGCNNSCTFCIVPSLRGREVDRSPADILAEVRSLVNDGVLEVTLLGQNV 224

Query: 185 NSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHP 364
           N+Y  +                 F+     +N G  FA+LL          R RFTSPHP
Sbjct: 225 NAYGVS-----------------FADPALPRNRGA-FAELLRACGDIDGLERVRFTSPHP 266

Query: 365 KDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVG 544
            +F D+++  M    N+C  +H+P QSGS  +L  M+R Y  E YL +++++R  IP   
Sbjct: 267 AEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYLGIIERVRAAIPHAA 326

Query: 545 LSSDFISGFCEETEDDHADTL 607
           +++D I GF  ETE+D A TL
Sbjct: 327 ITTDLIVGFPGETEEDFAATL 347

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>Y1001_PASMU (Q9L699) Hypothetical UPF0004 protein PM1001|
          Length = 474

 Score =  126 bits (317), Expect = 4e-29
 Identities = 72/197 (36%), Positives = 101/197 (51%)
 Frame = +2

Query: 17  TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYN 196
           TAFVS+M GCN  CSFC+VP+T                  L   GV+EV LLGQNVN+Y 
Sbjct: 148 TAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYR 207

Query: 197 DTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFP 376
             +  + +                        FA+LL  ++      R RFT+ HP +F 
Sbjct: 208 GATHDDGI----------------------CTFAELLRLVAAIDGIDRLRFTTSHPIEFT 245

Query: 377 DELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSD 556
           D+++ + RD   +   +HLP QSGS  VL  MKR +T   Y  +++K+R V P++ +SSD
Sbjct: 246 DDIIDVYRDTPELVSFLHLPVQSGSDRVLSMMKRNHTALEYKSIIRKLRAVRPEIQISSD 305

Query: 557 FISGFCEETEDDHADTL 607
           FI GF  ET +D   T+
Sbjct: 306 FIVGFPGETAEDFEQTM 322

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>YMCB_BACSU (O31778) Hypothetical UPF0004 protein ymcB|
          Length = 509

 Score =  126 bits (317), Expect = 4e-29
 Identities = 72/202 (35%), Positives = 108/202 (53%), Gaps = 1/202 (0%)
 Frame = +2

Query: 5   DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNV 184
           +  +  +V++M GC+  C++CIVP+T                  L   G KE+ LLGQNV
Sbjct: 208 NGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRRLASEGYKEITLLGQNV 267

Query: 185 NSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQL-SLEYPEMRFRFTSPH 361
           N+Y    + E++  G                       DL+D+L  ++ P  R RFT+ H
Sbjct: 268 NAYG--KDFEDMTYG---------------------LGDLMDELRKIDIP--RIRFTTSH 302

Query: 362 PKDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDV 541
           P+DF D L+ ++    N+   IHLP QSGS+EVL+ M R Y RE Y+ELV+KI+  +P+ 
Sbjct: 303 PRDFDDRLIEVLAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNA 362

Query: 542 GLSSDFISGFCEETEDDHADTL 607
            L++D I GF  ET++   +TL
Sbjct: 363 SLTTDIIVGFPNETDEQFEETL 384

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>Y269_HELPY (P56131) Hypothetical UPF0004 protein HP0269|
          Length = 437

 Score =  126 bits (316), Expect = 6e-29
 Identities = 69/198 (34%), Positives = 105/198 (53%)
 Frame = +2

Query: 14  VTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 193
           + + +++  GC+  C++CIVP T                  L   G KE+MLLGQNVN+Y
Sbjct: 138 IRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAEKLANNGTKELMLLGQNVNNY 197

Query: 194 NDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDF 373
                                 +R   ++  + F+DLLD+LS      R RFTSPHP   
Sbjct: 198 G---------------------ARFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHPLHM 236

Query: 374 PDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSS 553
            D  L        +CK IH+P QSGS+ VL+ M+RGY++E +L  V++++ ++P+VG+S+
Sbjct: 237 NDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEVGIST 296

Query: 554 DFISGFCEETEDDHADTL 607
           D I GF  E++ D  DT+
Sbjct: 297 DIIVGFPNESDKDFEDTM 314

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>Y284_AQUAE (O66638) Hypothetical UPF0004 protein aq_284|
          Length = 440

 Score =  125 bits (314), Expect = 1e-28
 Identities = 68/201 (33%), Positives = 107/201 (53%)
 Frame = +2

Query: 5   DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNV 184
           DN   A+V++++GC+  C++C+VP T                  L   GV+E+ LLGQNV
Sbjct: 145 DNKYCAYVTIIKGCDKNCTYCVVPRTRGKERSRALHSILDEVKRLVDDGVREIHLLGQNV 204

Query: 185 NSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHP 364
            ++           GK+++               + F++LL Q+S      R RFT+ HP
Sbjct: 205 TAW-----------GKDFEKP-------------IPFSELLYQVSKIDGVERIRFTTGHP 240

Query: 365 KDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVG 544
           +D  D+++  M D   +C  +HLP Q+GS  +L  M RGYT+E YLE ++K++  + D+ 
Sbjct: 241 RDLTDDIIEAMADIPQVCNALHLPFQAGSNRILALMDRGYTKEEYLEKIEKLKEKVKDIA 300

Query: 545 LSSDFISGFCEETEDDHADTL 607
           +S+D I GF  ETE+D   TL
Sbjct: 301 MSTDVIVGFPTETEEDFEHTL 321

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>Y019_HAEIN (Q57163) Hypothetical UPF0004 protein HI0019|
          Length = 474

 Score =  125 bits (313), Expect = 1e-28
 Identities = 73/197 (37%), Positives = 102/197 (51%)
 Frame = +2

Query: 17  TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYN 196
           TAFVS+M GCN  C+FC+VP+T                  L   GV+EV LLGQNVN+Y 
Sbjct: 148 TAFVSIMEGCNKYCTFCVVPYTRGEEVSRPVDDVLFEIAQLAEQGVREVNLLGQNVNAYR 207

Query: 197 DTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFP 376
                    P  + Q+                FA+LL  ++      R RFT+ HP +F 
Sbjct: 208 G--------PTHDGQICS--------------FAELLRLVASIDGIDRLRFTTSHPIEFT 245

Query: 377 DELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSD 556
           D+++ + RD   +   +HLP Q+GS  VL  MKR +T   Y  +++K+R V PD+ +SSD
Sbjct: 246 DDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRAHTALEYKSIIRKLRAVRPDIQISSD 305

Query: 557 FISGFCEETEDDHADTL 607
           FI GF  ET +D   T+
Sbjct: 306 FIVGFPGETAEDFEQTM 322

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>Y392_BUCBP (Q89AC2) Hypothetical UPF0004 protein bbp_392|
          Length = 445

 Score =  123 bits (308), Expect = 5e-28
 Identities = 76/198 (38%), Positives = 101/198 (51%)
 Frame = +2

Query: 14  VTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 193
           VTAFVS+M GCN  CSFCIVP+T                  L   GVKE+ LLGQNVNSY
Sbjct: 148 VTAFVSIMEGCNKFCSFCIVPYTRGHEISRPVDDILLEISTLSSRGVKEIHLLGQNVNSY 207

Query: 194 NDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDF 373
                      GK +         CK  N  LR    +D +       R RFT+ +P +F
Sbjct: 208 K----------GKTFN-----GDICKFSNL-LRLVASIDGID------RIRFTTSNPFEF 245

Query: 374 PDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSS 553
            D+++ +  +   I   +HLP QSGS  +L+ MKR +T + Y  ++ KI  + P++ +SS
Sbjct: 246 TDDIIEIYAEIPKIVSFLHLPVQSGSNRILQLMKRMHTIDEYKTIINKILKLRPNIQISS 305

Query: 554 DFISGFCEETEDDHADTL 607
           DFI GF  ET  D   TL
Sbjct: 306 DFIIGFPGETLIDFEQTL 323

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>YLEA_ECOLI (P0AEI1) Hypothetical UPF0004 protein yleA|
          Length = 474

 Score =  122 bits (307), Expect = 6e-28
 Identities = 71/197 (36%), Positives = 102/197 (51%)
 Frame = +2

Query: 17  TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYN 196
           TAFVS+M GCN  C++C+VP+T                  L   GV+EV LLGQNVN++ 
Sbjct: 148 TAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWR 207

Query: 197 DTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFP 376
                     G+N+  + G             FADLL  ++      R RFT+ HP +F 
Sbjct: 208 ----------GENYDGTTG------------SFADLLRLVAAIDGIDRIRFTTSHPIEFT 245

Query: 377 DELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSD 556
           D+++ + RD   +   +HLP QSGS  +L  M R +T   Y  +++K+R   PD+ +SSD
Sbjct: 246 DDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPDIQISSD 305

Query: 557 FISGFCEETEDDHADTL 607
           FI GF  ET +D   T+
Sbjct: 306 FIVGFPGETTEDFEKTM 322

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>YLEA_ECOL6 (P0AEI2) Hypothetical UPF0004 protein yleA|
          Length = 474

 Score =  122 bits (307), Expect = 6e-28
 Identities = 71/197 (36%), Positives = 102/197 (51%)
 Frame = +2

Query: 17  TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYN 196
           TAFVS+M GCN  C++C+VP+T                  L   GV+EV LLGQNVN++ 
Sbjct: 148 TAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWR 207

Query: 197 DTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFP 376
                     G+N+  + G             FADLL  ++      R RFT+ HP +F 
Sbjct: 208 ----------GENYDGTTG------------SFADLLRLVAAIDGIDRIRFTTSHPIEFT 245

Query: 377 DELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSD 556
           D+++ + RD   +   +HLP QSGS  +L  M R +T   Y  +++K+R   PD+ +SSD
Sbjct: 246 DDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPDIQISSD 305

Query: 557 FISGFCEETEDDHADTL 607
           FI GF  ET +D   T+
Sbjct: 306 FIVGFPGETTEDFEKTM 322

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>YLEA_ECO57 (P0AEI3) Hypothetical UPF0004 protein yleA|
          Length = 474

 Score =  122 bits (307), Expect = 6e-28
 Identities = 71/197 (36%), Positives = 102/197 (51%)
 Frame = +2

Query: 17  TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYN 196
           TAFVS+M GCN  C++C+VP+T                  L   GV+EV LLGQNVN++ 
Sbjct: 148 TAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWR 207

Query: 197 DTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFP 376
                     G+N+  + G             FADLL  ++      R RFT+ HP +F 
Sbjct: 208 ----------GENYDGTTG------------SFADLLRLVAAIDGIDRIRFTTSHPIEFT 245

Query: 377 DELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSD 556
           D+++ + RD   +   +HLP QSGS  +L  M R +T   Y  +++K+R   PD+ +SSD
Sbjct: 246 DDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPDIQISSD 305

Query: 557 FISGFCEETEDDHADTL 607
           FI GF  ET +D   T+
Sbjct: 306 FIVGFPGETTEDFEKTM 322

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>Y989_MYCLE (Q49842) Hypothetical UPF0004 protein ML0989|
          Length = 517

 Score =  120 bits (300), Expect = 4e-27
 Identities = 72/201 (35%), Positives = 99/201 (49%)
 Frame = +2

Query: 5   DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNV 184
           ++   A+VS+  GCNN C+FCIVP                    L   GV EV LLGQNV
Sbjct: 161 ESDYAAWVSISVGCNNSCTFCIVPSLRGKEVDRSPADILAEVEALVADGVLEVTLLGQNV 220

Query: 185 NSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHP 364
           N+Y  +                 F+     +N G  FA+LL          R RFTSPHP
Sbjct: 221 NAYGVS-----------------FADPALARNRG-SFAELLRSCGSIDGLERVRFTSPHP 262

Query: 365 KDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVG 544
            +F  +++  M    N+C  +H+P QSGS  VL  M+R Y  E YL ++ ++R  +P   
Sbjct: 263 AEFTYDVIEAMAQTPNVCPSLHMPLQSGSDRVLRAMRRSYRVERYLGIIGQVRAAMPHAA 322

Query: 545 LSSDFISGFCEETEDDHADTL 607
           +++D I GF  ETE+D A TL
Sbjct: 323 ITTDLIVGFPGETEEDFAATL 343

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>Y3980_PSEAE (Q51470) Hypothetical UPF0004 protein PA3980|
          Length = 446

 Score =  119 bits (298), Expect = 7e-27
 Identities = 72/197 (36%), Positives = 96/197 (48%)
 Frame = +2

Query: 17  TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYN 196
           TAFVSVM GC+  CSFC+VP+T                  L   GV+EV LLGQNVN + 
Sbjct: 148 TAFVSVMEGCSKYCSFCVVPYTRGEEVSRPFDDVIAEVIHLAENGVREVTLLGQNVNGFR 207

Query: 197 DTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFP 376
             +    L                        FA+LL  ++      R R+T+ HP +F 
Sbjct: 208 GLTHDGRLAD----------------------FAELLRVVAAVDGIERIRYTTSHPLEFS 245

Query: 377 DELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSD 556
           D L+    +   + K IHLP QSGS  VL  MKR +T   Y   ++K++  +PD+ +SSD
Sbjct: 246 DALIQAHAEVPELVKFIHLPVQSGSDRVLAAMKRNHTVLEYKSRIRKLKAAVPDICISSD 305

Query: 557 FISGFCEETEDDHADTL 607
           FI GF  ETE D   T+
Sbjct: 306 FIVGFPGETEKDFEQTM 322

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>Y441_BUCAI (P57516) Hypothetical UPF0004 protein BU441|
          Length = 439

 Score =  118 bits (296), Expect = 1e-26
 Identities = 66/197 (33%), Positives = 100/197 (50%)
 Frame = +2

Query: 17  TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYN 196
           TA +S+M GCN  CSFC+VP+T                  L   G+KE+ LLGQNVN+Y 
Sbjct: 147 TADISIMEGCNKYCSFCVVPYTRGNEISRPCDDVLFEISLLAKQGIKEINLLGQNVNAYQ 206

Query: 197 DTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFP 376
             +                F+ +    +  +R    +D +       R RFT+ +P +F 
Sbjct: 207 GPT----------------FNGKVCYFSELIRLVAEIDGIE------RIRFTTSNPLEFT 244

Query: 377 DELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSD 556
           D+++ + +D   +   +HLP QSGS ++L  MKR YT E Y  +++K+    PD+ +SSD
Sbjct: 245 DDIIEVYKDTPKLVSFLHLPVQSGSNKILNLMKRSYTTEDYTSIIKKLTIARPDIQISSD 304

Query: 557 FISGFCEETEDDHADTL 607
           FI GF  E+E D   T+
Sbjct: 305 FIVGFPGESEIDFEKTI 321

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>Y426_BUCAP (Q8K9C2) Hypothetical UPF0004 protein BUsg426|
          Length = 439

 Score =  117 bits (293), Expect = 3e-26
 Identities = 65/197 (32%), Positives = 101/197 (51%)
 Frame = +2

Query: 17  TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYN 196
           TA +S+M GCN  CSFC+VP+T                  L   GV+E+ LLGQNVN+Y 
Sbjct: 147 TASISIMEGCNKYCSFCVVPYTRGHEISRPSDDILLEISILAENGVREINLLGQNVNAYR 206

Query: 197 DTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFP 376
             +                F+ +    +  LR    +D +       R RFT+ +P +F 
Sbjct: 207 GRT----------------FNGKICFFSELLRLVSEIDGID------RIRFTTSNPLEFT 244

Query: 377 DELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSD 556
           D+++ + +D   +   +HLP QSGS  +L+ MKR YT E Y ++++K+     ++ +SSD
Sbjct: 245 DDIIEVYQDTPKLVSFLHLPVQSGSNRILQLMKRSYTTEEYEKIIEKLILARSNIQISSD 304

Query: 557 FISGFCEETEDDHADTL 607
           FI GF  E+E+D   T+
Sbjct: 305 FIVGFPSESEEDFQKTI 321

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>Y996_SYNY3 (P73127) Hypothetical UPF0004 protein sll0996|
          Length = 451

 Score =  115 bits (287), Expect = 1e-25
 Identities = 67/201 (33%), Positives = 106/201 (52%)
 Frame = +2

Query: 5   DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNV 184
           +++V+A+V+++ GCN  CS+C+VP                    L   G KEV LLGQN+
Sbjct: 144 ESTVSAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYGEMEVLAQQGFKEVTLLGQNI 203

Query: 185 NSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHP 364
           ++Y           G++     G +   +  +T     DLL  +       R RF + HP
Sbjct: 204 DAY-----------GRDLP---GTTPSGRHLHT---LTDLLYHVHDIEGIDRLRFATSHP 246

Query: 365 KDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVG 544
           + F + L+   ++   +C+  H+P QSG  ++L+ MKRGYTRE YL++++KIR  +PD  
Sbjct: 247 RYFTERLIQACQELPKVCEHFHIPFQSGDNDILKAMKRGYTREKYLQIIEKIRRYMPDAA 306

Query: 545 LSSDFISGFCEETEDDHADTL 607
           +S+D I GF  ETE    +TL
Sbjct: 307 ISADVIVGFPGETEAQFENTL 327

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>Y808_RICPR (Q9ZCE8) Hypothetical UPF0004 protein RP808|
          Length = 445

 Score =  111 bits (278), Expect = 1e-24
 Identities = 63/197 (31%), Positives = 94/197 (47%)
 Frame = +2

Query: 17  TAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYN 196
           ++F+SV  GC+  C+FC+VP+T                        KE++LLGQNVN+Y+
Sbjct: 153 SSFISVQEGCDKFCTFCVVPYTRGAEFSRSVEQVYRESLKAVSNDAKEIILLGQNVNAYH 212

Query: 197 DTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFP 376
                +++                         ADLL  L+      R R+ + HP D  
Sbjct: 213 GKGPKDKI----------------------FTLADLLKCLAQIPNLARLRYMTSHPIDMT 250

Query: 377 DELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSD 556
           D+L+ L      +   +HLP QSGS ++L+ M R + R+ Y  ++ ++R    D+ LSSD
Sbjct: 251 DDLIKLHGTEPKLMPFLHLPVQSGSNKILKAMNRKHDRDYYFNIINRLREARSDIVLSSD 310

Query: 557 FISGFCEETEDDHADTL 607
           FI GF  ETE D  DTL
Sbjct: 311 FIVGFPGETEQDFEDTL 327

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>Y16R_MYCIO (Q49573) Hypothetical UPF0004 protein in 16S RNA 5'region|
          Length = 438

 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 1/197 (0%)
 Frame = +2

Query: 20  AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 199
           AF+ +  GCN MCS+CI+PF+                  L     KE++L G N   Y D
Sbjct: 151 AFIKIQDGCNFMCSYCIIPFSRGRQRSQKMESILEKIKTLVSKXFKEIVLTGVNTAGYLD 210

Query: 200 TSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFPD 379
            +                        NT   F DLL+ ++    + R R +S  P    D
Sbjct: 211 ENN-----------------------NT---FFDLLNNINKLDGDFRVRISSLEPFQIND 244

Query: 380 ELLYLMR-DRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSD 556
           E++ L+  ++   C+  H+  QSGS +VL++M R YT + + +L+QKI N  P    ++D
Sbjct: 245 EIIDLVTSNKKRFCQHWHICLQSGSDDVLKKMNRKYTTDEFYKLMQKILNKSPLTNFTTD 304

Query: 557 FISGFCEETEDDHADTL 607
           +I GF  ET++D   ++
Sbjct: 305 YIVGFPTETDEDQKKSI 321

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>YQEV_BACSU (P54462) Hypothetical UPF0004 protein yqeV|
          Length = 451

 Score = 89.0 bits (219), Expect = 1e-17
 Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 1/196 (0%)
 Frame = +2

Query: 20  AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 199
           A + +  GCNN C+FCI+P+                   L  AG KE++L G +   Y +
Sbjct: 145 ASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLVDAGYKEIVLTGIHTGGYGE 204

Query: 200 TSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEM-RFRFTSPHPKDFP 376
             +                            FA LL +L      + R R +S       
Sbjct: 205 DMK-------------------------DYNFAKLLSELDTRVEGVKRIRISSIEASQIT 239

Query: 377 DELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSD 556
           DE++ ++     I   +H+P QSGS  VL+RM+R YT E + + + K++  +P + ++SD
Sbjct: 240 DEVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAVTSD 299

Query: 557 FISGFCEETEDDHADT 604
            I GF  ETE++  +T
Sbjct: 300 VIVGFPGETEEEFMET 315

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>Y474_AQUAE (O66772) Hypothetical UPF0004 protein aq_474|
          Length = 410

 Score = 86.3 bits (212), Expect = 6e-17
 Identities = 60/197 (30%), Positives = 86/197 (43%)
 Frame = +2

Query: 14  VTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSY 193
           V  F+ V  GCN  C+FC++P+                   L   G KEV+L G  ++ Y
Sbjct: 142 VRPFLKVQEGCNKFCTFCVIPYARGKVRSVDLEKIVHQVKLLAQKGFKEVVLTGTQLSQY 201

Query: 194 NDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDF 373
                         W   +G++           +  L + + +E  E+  R +S H K+ 
Sbjct: 202 -------------GW--DKGYN----------LYTLLTELIKIEGIEL-IRLSSMHIKEM 235

Query: 374 PDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSS 553
             ELL L+     I    HL  QSGS  +LE M RGYTRE Y E+V  I    P   + +
Sbjct: 236 DKELLKLIVSEEKIAPHFHLSLQSGSNRILELMDRGYTREEYEEVVNFIVENRPISSIGT 295

Query: 554 DFISGFCEETEDDHADT 604
           D I GF  E+E+D  +T
Sbjct: 296 DVIVGFPTESEEDFQET 312

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>Y477_CHLPN (Q9Z874) Hypothetical UPF0004 protein|
           CPn_0477/CP0277/CPj0477/CpB0496
          Length = 421

 Score = 85.5 bits (210), Expect = 1e-16
 Identities = 55/196 (28%), Positives = 82/196 (41%)
 Frame = +2

Query: 20  AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 199
           AF+ V  GCN+ CS+CI+P+                   +   G +EV++ G NV  Y D
Sbjct: 137 AFIKVQDGCNSFCSYCIIPYLRGRSVSRPAEKILAEIAGVVDQGYREVVIAGINVGDYCD 196

Query: 200 TSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFPD 379
                                           A L++Q+       R R +S  P D  +
Sbjct: 197 GER---------------------------SLASLIEQVDQIPGIERIRISSIDPDDITE 229

Query: 380 ELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSDF 559
           +L   +    + C   HL  QSGS  +L+RM R Y+R  +L+ V+K R   P    ++D 
Sbjct: 230 DLHRAITSSRHTCPSSHLVLQSGSNSILKRMNRKYSRGDFLDCVEKFRASDPRYAFTTDV 289

Query: 560 ISGFCEETEDDHADTL 607
           I GF  E++ D  DTL
Sbjct: 290 IVGFPGESDQDFEDTL 305

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>Y416_RICPR (Q9ZDB6) Hypothetical UPF0004 protein RP416|
          Length = 421

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 56/201 (27%), Positives = 87/201 (43%), Gaps = 1/201 (0%)
 Frame = +2

Query: 5   DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNV 184
           D    AF+ V  GC++ C+FCI+P+                   L   G KEV++ G +V
Sbjct: 135 DGKSRAFIQVQNGCDHNCTFCIIPYVRGKSRSIPIGTIVAQVKHLVLKGFKEVVITGVDV 194

Query: 185 NSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEM-RFRFTSPH 361
            +Y          PG                     FA ++ ++    PE+ R R +S  
Sbjct: 195 TAYGSDL------PGSP------------------TFAQMIKRVLKLVPELKRMRLSSID 230

Query: 362 PKDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDV 541
             +  DEL  L+     I    H+  QSG   +L+RMKR + R + +E  QK+R + P+V
Sbjct: 231 IAEIDDELFELIAYSERIMPHFHISVQSGDDMILKRMKRRHNRASVIEFCQKLRAIRPEV 290

Query: 542 GLSSDFISGFCEETEDDHADT 604
              +D I+GF  ET +   +T
Sbjct: 291 SFGADIIAGFPTETNEMFENT 311

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>Y1571_PASMU (Q9CKN9) Hypothetical UPF0004 protein PM1571|
          Length = 446

 Score = 82.4 bits (202), Expect = 9e-16
 Identities = 55/191 (28%), Positives = 94/191 (49%)
 Frame = +2

Query: 20  AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 199
           A++ +  GC++ C+FCI+P                    L  AGVKE++++ Q+ ++Y  
Sbjct: 140 AYLKISEGCDHRCTFCIIPSMRGDLDSRSITQVLDEAKRLVEAGVKEILVVSQDTSAY-- 197

Query: 200 TSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFPD 379
                 L+  K  Q    F +   +KN  +   + L +L +    +R  +  P+P    D
Sbjct: 198 -----ALDRSKEEQNKTVFWNGMPIKNNLISLCEQLGKLGVW---VRLHYVYPYPH--VD 247

Query: 380 ELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSDF 559
           +L+ LM +   I   + +P Q  S ++L+ MKR  + E  LE ++K R + PD+ L S F
Sbjct: 248 QLIPLMAEG-KILPYLDIPLQHASPKILKAMKRPGSIERTLERIKKWREICPDLTLRSTF 306

Query: 560 ISGFCEETEDD 592
           I GF  E+E+D
Sbjct: 307 IVGFPGESEED 317

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>Y830_THEMA (Q9WZT7) Hypothetical UPF0004 protein TM0830|
          Length = 434

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 1/202 (0%)
 Frame = +2

Query: 5   DNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXX-XXXXXXXXXXLWYAGVKEVMLLGQN 181
           ++   +++ V  GC+N C++C +                      +   G KE+++ G N
Sbjct: 134 EDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEFAEMVMKGYKEIVITGVN 193

Query: 182 VNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPH 361
           +  Y                           K+ G   A+LL  +     + R R +S +
Sbjct: 194 LGKYG--------------------------KDMGSSLAELLKVIEKVPGDYRVRLSSIN 227

Query: 362 PKDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDV 541
            +D  DE++   +    +C  +H+  QSGS +VL+RM R Y    ++ +V K+R++ PD 
Sbjct: 228 VEDVNDEIVKAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLRSIDPDF 287

Query: 542 GLSSDFISGFCEETEDDHADTL 607
            +++D I GF  ET+ D   TL
Sbjct: 288 SITTDIIVGFPGETDADFQRTL 309

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>Y269_TREPA (O83293) Hypothetical UPF0004 protein TP0269|
          Length = 482

 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 56/195 (28%), Positives = 79/195 (40%)
 Frame = +2

Query: 20  AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 199
           A + V  GCN+ C+FC + F                   L   G+ EV+L G N++ Y  
Sbjct: 205 ASIKVQDGCNSGCAFCRIRFARGRAVSLETHEVIGRVQALEARGMSEVVLTGVNLSQYRS 264

Query: 200 TSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFPD 379
            S                           + FA LL+ +  E   +  R +S +P+    
Sbjct: 265 GS---------------------------IDFAGLLELIVQETHTIHIRISSLYPESVTS 297

Query: 380 ELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSDF 559
             L  +     +    HL  QSGS  VL RM+R YTR    + V  +R+V  +  L  D 
Sbjct: 298 AFLRAIAHTR-VSPHFHLSVQSGSDRVLRRMRRAYTRADIYQAVSDLRSVREEPFLGCDI 356

Query: 560 ISGFCEETEDDHADT 604
           I GF  ETE+D ADT
Sbjct: 357 IVGFPGETEEDFADT 371

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>Y1729_PYRAB (Q9UXX9) Hypothetical UPF0004 protein PYRAB17290|
          Length = 425

 Score = 75.9 bits (185), Expect = 9e-14
 Identities = 59/202 (29%), Positives = 82/202 (40%), Gaps = 3/202 (1%)
 Frame = +2

Query: 2   SDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQN 181
           S  +V   V +  GC N C++C   F                       G KE+ L  ++
Sbjct: 134 SPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAIKQGYKEIWLSAED 193

Query: 182 VNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPH 361
              Y                   GF       + G   A LLD+++    E R R    +
Sbjct: 194 TGCY-------------------GF-------DIGTNLAKLLDEITAIEGEFRVRVGMMN 227

Query: 362 PK---DFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVI 532
           P     F DEL+   +D   I K +HLP QSG  ++L RM R YT E + E+V++ R   
Sbjct: 228 PNHVLKFLDELIEAYQD-EKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKF 286

Query: 533 PDVGLSSDFISGFCEETEDDHA 598
           PD+ L +D I GF    EDD A
Sbjct: 287 PDLNLHTDIIVGF--PGEDDEA 306

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>Y1247_ARCFU (O29021) Hypothetical UPF0004 protein AF1247|
          Length = 405

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 56/193 (29%), Positives = 80/193 (41%), Gaps = 3/193 (1%)
 Frame = +2

Query: 20  AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 199
           A VS+  GC   CSFC   F                      AG +E+ L  Q+  +Y  
Sbjct: 116 AIVSISEGCLGKCSFCATKFARGRLRSFSMDAIVREAERAVRAGYREIQLTSQDTGAYG- 174

Query: 200 TSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKD--- 370
                 ++ G+                      +LL ++S    E R R    +P+    
Sbjct: 175 ------MDKGR------------------AMLPELLRKISEIEGEFRVRVGMMNPQHAVR 210

Query: 371 FPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLS 550
             DEL+        I K +H+P QSG   +LE MKR +T E Y+E+V+  RN   DV +S
Sbjct: 211 MLDELINAYSSE-KIYKFLHIPVQSGDNRILEDMKRNHTVEDYVEVVEAFRNSFDDVLIS 269

Query: 551 SDFISGFCEETED 589
           +D I GF  ETE+
Sbjct: 270 TDIIVGFPTETEE 282

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>YLIG_ECOLI (P0AEI4) Hypothetical UPF0004 protein yliG|
          Length = 441

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 50/191 (26%), Positives = 92/191 (48%)
 Frame = +2

Query: 20  AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 199
           A++ +  GCN+ C+FCI+P                    L  AGVKE++++ Q+ ++Y  
Sbjct: 142 AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAY-- 199

Query: 200 TSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFPD 379
                    G + +   GF +   VK + +   + L +L + +  + + +  PH     D
Sbjct: 200 ---------GVDVKHRTGFHNGEPVKTSMVSLCEQLSKLGI-WTRLHYVYPYPHV----D 245

Query: 380 ELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSDF 559
           +++ LM +   I   + +P Q  S  +L+ MKR  + +  L  +++ R + P++ L S F
Sbjct: 246 DVIPLMAEG-KILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRSTF 304

Query: 560 ISGFCEETEDD 592
           I GF  ETE+D
Sbjct: 305 IVGFPGETEED 315

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>YLIG_ECO57 (P0AEI5) Hypothetical UPF0004 protein yliG|
          Length = 441

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 50/191 (26%), Positives = 92/191 (48%)
 Frame = +2

Query: 20  AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 199
           A++ +  GCN+ C+FCI+P                    L  AGVKE++++ Q+ ++Y  
Sbjct: 142 AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAY-- 199

Query: 200 TSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFPD 379
                    G + +   GF +   VK + +   + L +L + +  + + +  PH     D
Sbjct: 200 ---------GVDVKHRTGFHNGEPVKTSMVSLCEQLSKLGI-WTRLHYVYPYPHV----D 245

Query: 380 ELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSDF 559
           +++ LM +   I   + +P Q  S  +L+ MKR  + +  L  +++ R + P++ L S F
Sbjct: 246 DVIPLMAEG-KILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRSTF 304

Query: 560 ISGFCEETEDD 592
           I GF  ETE+D
Sbjct: 305 IVGFPGETEED 315

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>Y826_METTH (O26914) Hypothetical UPF0004 protein MTH826|
          Length = 424

 Score = 73.2 bits (178), Expect = 6e-13
 Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 2/201 (0%)
 Frame = +2

Query: 8   NSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVN 187
           N +   + +  GCN  CS+C   F                      +G +E+ L  Q+  
Sbjct: 138 NPLIHIIPICEGCNGSCSYCCTRFARGRIQSYPSDLIISEAREAVASGCREIQLTAQDTA 197

Query: 188 SYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPK 367
           +Y                            +TG + +D++  +S      R R    HP 
Sbjct: 198 AYG--------------------------VDTGEKLSDIIKGISGIPGNFRIRVGMMHPA 231

Query: 368 DFPDELLYLMR--DRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDV 541
               +L  L+       +   +HLP QSGS  VL  M+RG+T + +  +V++ R+ IPD+
Sbjct: 232 SVLRDLDGLVEAFKSEKVYSFLHLPVQSGSDSVLADMERGHTVDEFRMIVERFRSEIPDI 291

Query: 542 GLSSDFISGFCEETEDDHADT 604
            +++D I G+  E  +D  DT
Sbjct: 292 SIATDIIVGYPTEEREDFMDT 312

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>Y867_METJA (Q58277) Hypothetical UPF0004 protein MJ0867|
          Length = 427

 Score = 70.5 bits (171), Expect = 4e-12
 Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 3/195 (1%)
 Frame = +2

Query: 32  VMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYNDTSEV 211
           +  GC   CS+CIV                     L   G K +++  Q+   Y      
Sbjct: 151 ICEGCIGNCSYCIVKIARGGLISYPREKIVNKAKELINKGAKCLLITAQDTACY------ 204

Query: 212 EELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKD---FPDE 382
                        GF       + G   A+LL++L+    E   R    H K+     DE
Sbjct: 205 -------------GF-------DIGDNLANLLNELTQIKGEFIMRVGMMHAKNAELILDE 244

Query: 383 LLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSDFI 562
           L+ + ++   + K +HLP QSG  E+L+RMKRGYT + + ++V + R  I ++  ++D I
Sbjct: 245 LIEVYQN-EKVGKFLHLPLQSGDDEILKRMKRGYTVDEFKDIVNEFRRKIKNLCFTTDII 303

Query: 563 SGFCEETEDDHADTL 607
            GF  ETE+   +TL
Sbjct: 304 VGFPGETEEQFQNTL 318

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>Y1875_PYRHO (O59545) Hypothetical UPF0004 protein PH1875|
          Length = 425

 Score = 69.3 bits (168), Expect = 8e-12
 Identities = 52/199 (26%), Positives = 80/199 (40%), Gaps = 3/199 (1%)
 Frame = +2

Query: 2   SDNSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQN 181
           S  +V   + +  GC N C++C                           G KE+ L  ++
Sbjct: 134 SPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWAIKQGYKEIWLSAED 193

Query: 182 VNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPH 361
              Y                   GF       + G   A L+D+++    E R R    +
Sbjct: 194 TGCY-------------------GF-------DIGTNLAKLIDEITAIEGEFRIRVGMMN 227

Query: 362 PK---DFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVI 532
           P     F DEL+   +D   + K +HLP QSG  E+L +M R YT E + E+V+  R   
Sbjct: 228 PNHVLKFLDELIDAYKD-EKVYKFLHLPVQSGDNEILRKMGRMYTVEEFEEIVKAFRREF 286

Query: 533 PDVGLSSDFISGFCEETED 589
           P++ L +D I GF  E+E+
Sbjct: 287 PELNLHTDIIVGFPGESEE 305

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>Y082_SYNY3 (Q55803) Hypothetical UPF0004 protein slr0082|
          Length = 443

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 1/195 (0%)
 Frame = +2

Query: 8   NSVTAFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVN 187
           N   A++ V  GC+  C+FCI+P                    L   GVKE++L+ Q   
Sbjct: 142 NEAIAYLRVAEGCDYRCAFCIIPQLRGKQRSRPIESIVAEAEQLASQGVKELILISQITT 201

Query: 188 SYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQL-SLEYPEMRFRFTSPHP 364
           +Y      E                         + A+LL  L  ++ P +R  +   +P
Sbjct: 202 NYGLDLYGEP------------------------KLAELLQALGKVDIPWIRIHYA--YP 235

Query: 365 KDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVG 544
                +++  +RD  N+   + LP Q    ++L  M R +  +   +++ +++  +PD  
Sbjct: 236 TGLTPKVIEAIRDTPNVLPYLDLPLQHSHPDILRAMNRPWQGQVNDDIITRLKTALPDAV 295

Query: 545 LSSDFISGFCEETED 589
           L + FI GF  ETE+
Sbjct: 296 LRTTFIVGFPGETEE 310

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>Y849_AQUAE (O67016) Hypothetical UPF0004 protein aq_849|
          Length = 432

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 47/191 (24%), Positives = 78/191 (40%)
 Frame = +2

Query: 20  AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 199
           A++ +  GCN +CSFC +P                    L   GVKE+ ++ Q+   Y  
Sbjct: 126 AYLKIAEGCNRLCSFCAIPKIRGRHRSRKIEEIVDEAKFLADQGVKEICVVSQDTTYYGK 185

Query: 200 TSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFPD 379
               E     K  +L EG       K  G+++  LL                 +P +  +
Sbjct: 186 DLYKEY----KLVELLEGLE-----KVEGIKWIRLLYL---------------YPTEVHE 221

Query: 380 ELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSDF 559
           +L+  + +   +     +P Q  S  VL+ M+RGY  +    L++ IR  I +    + F
Sbjct: 222 DLIDYVANSEKVLPYFDVPLQHVSDRVLKDMRRGYDGKFVRNLIENIRKKIENAVFRTTF 281

Query: 560 ISGFCEETEDD 592
           I GF  E+E+D
Sbjct: 282 IVGFPTESEED 292

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>Y285_HELPJ (Q9ZMF0) Hypothetical UPF0004 protein jhp_0270|
          Length = 418

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 50/189 (26%), Positives = 76/189 (40%)
 Frame = +2

Query: 20  AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 199
           AF+ +  GC+  C++CI+P                    L   GV+EV+L G NV SY  
Sbjct: 136 AFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYG- 194

Query: 200 TSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFPD 379
                                    K+ G   A L+ +LS      R R  S  P    D
Sbjct: 195 -------------------------KDRGSNIARLIKKLSQITGLKRIRIGSLEPNQIND 229

Query: 380 ELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSDF 559
           E L L+ +   + K +H+  Q     +LERM R    ++  EL++ I +   +  + +DF
Sbjct: 230 EFLELLEEDF-LEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEIIAS--KNFAIGTDF 286

Query: 560 ISGFCEETE 586
           I G   E+E
Sbjct: 287 IVGHPGESE 295

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>Y285_HELPY (P56130) Hypothetical UPF0004 protein HP0285|
          Length = 418

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 48/183 (26%), Positives = 73/183 (39%)
 Frame = +2

Query: 20  AFVSVMRGCNNMCSFCIVPFTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQNVNSYND 199
           AF+ +  GC+  C++CI+P                    L   GV+EV+L G NV SY  
Sbjct: 136 AFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYG- 194

Query: 200 TSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFPD 379
                                    K+ G   A L+ +LS      R R  S  P    D
Sbjct: 195 -------------------------KDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQIND 229

Query: 380 ELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSDF 559
           E L L+ +   + K +H+  Q     +LERM R    ++  EL++ I +   +  + +DF
Sbjct: 230 EFLELLEEDF-LEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNFAIGTDF 286

Query: 560 ISG 568
           I G
Sbjct: 287 IVG 289

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>Y865_METJA (Q58275) Hypothetical UPF0004 protein MJ0865|
          Length = 449

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 43/199 (21%), Positives = 79/199 (39%), Gaps = 1/199 (0%)
 Frame = +2

Query: 2   SDNSVTAFVSVMRGCNNMCSFCIVP-FTXXXXXXXXXXXXXXXXXXLWYAGVKEVMLLGQ 178
           S      ++   RGC   C+FC VP F                      AG K + + G 
Sbjct: 163 SIRGANVYIETHRGCLGNCTFCQVPKFFGKTIRSRDVEDVVEEVKAFKRAGAKRIAISGG 222

Query: 179 NVNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSP 358
             + Y     +      K ++L E             + ++++ + +L  P+MR      
Sbjct: 223 TGSLYAFKKSINR---DKFFELLE-------------KVSEVIGKNNLSVPDMRV----- 261

Query: 359 HPKDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPD 538
              D+ DE +      + I  + +   +SGS ++L+ MK+G  RE  L+ ++  ++    
Sbjct: 262 ---DYVDEEILEAIKNYTIGWVFY-GIESGSDKILKDMKKGTNREKNLDAIKLAKDC--G 315

Query: 539 VGLSSDFISGFCEETEDDH 595
           V ++  FI  +  ETE D+
Sbjct: 316 VKVAGSFIVAYPTETEMDY 334

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>Y1487_METJA (Q58882) Hypothetical protein MJ1487|
          Length = 426

 Score = 38.1 bits (87), Expect = 0.020
 Identities = 25/63 (39%), Positives = 34/63 (53%)
 Frame = +2

Query: 419 KLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSDFISGFCEETEDDHA 598
           K + + AQSGS +VLE   RG+T E     V+  R     +G+  DFI G   ETE+D  
Sbjct: 292 KNLVIGAQSGSEKVLELCHRGHTVEDVYNAVRVARKA--GLGVDVDFIFGLPGETEEDVE 349

Query: 599 DTL 607
            T+
Sbjct: 350 KTI 352

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>BARA_SHIFL (P59342) Signal transduction histidine-protein kinase barA (EC|
            2.7.13.3)
          Length = 918

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
 Frame = +2

Query: 173  GQNVNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFT 352
            G  ++S   T EV E+    N  L    + R     T L   D+L  L    PE+R +  
Sbjct: 787  GSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLA-RDMLQMLLDFLPEVRNKVE 845

Query: 353  SPHPKDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTRE-----AYLELVQK 517
                 + P+ L+ L+   H  C    +P      +++E+  R  T+E       LEL+ +
Sbjct: 846  EQLAGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDE 905

Query: 518  IRNV 529
            + NV
Sbjct: 906  MDNV 909

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>BARA_ECOLI (P0AEC5) Signal transduction histidine-protein kinase barA (EC|
            2.7.13.3)
          Length = 918

 Score = 34.7 bits (78), Expect = 0.22
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
 Frame = +2

Query: 173  GQNVNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFT 352
            G  ++S   T EV E+    N  L    + R     T L   D+L  L    PE+R +  
Sbjct: 787  GSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLA-RDMLQMLLDFLPEVRNKVE 845

Query: 353  SPHPKDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTRE-----AYLELVQK 517
                 + P+ L+ L+   H  C    +P      +++E+  R  T+E       LEL+ +
Sbjct: 846  EQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDE 905

Query: 518  IRNV 529
            + NV
Sbjct: 906  MDNV 909

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>BARA_ECOL6 (P0AEC6) Signal transduction histidine-protein kinase barA (EC|
            2.7.13.3)
          Length = 918

 Score = 34.7 bits (78), Expect = 0.22
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
 Frame = +2

Query: 173  GQNVNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFT 352
            G  ++S   T EV E+    N  L    + R     T L   D+L  L    PE+R +  
Sbjct: 787  GSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLA-RDMLQMLLDFLPEVRNKVE 845

Query: 353  SPHPKDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTRE-----AYLELVQK 517
                 + P+ L+ L+   H  C    +P      +++E+  R  T+E       LEL+ +
Sbjct: 846  EQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDE 905

Query: 518  IRNV 529
            + NV
Sbjct: 906  MDNV 909

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>BARA_ECO57 (P0AEC7) Signal transduction histidine-protein kinase barA (EC|
            2.7.13.3)
          Length = 918

 Score = 34.7 bits (78), Expect = 0.22
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
 Frame = +2

Query: 173  GQNVNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFT 352
            G  ++S   T EV E+    N  L    + R     T L   D+L  L    PE+R +  
Sbjct: 787  GSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLA-RDMLQMLLDFLPEVRNKVE 845

Query: 353  SPHPKDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTRE-----AYLELVQK 517
                 + P+ L+ L+   H  C    +P      +++E+  R  T+E       LEL+ +
Sbjct: 846  EQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDE 905

Query: 518  IRNV 529
            + NV
Sbjct: 906  MDNV 909

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>METE_AQUAE (O67606) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 761

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 15/88 (17%)
 Frame = +2

Query: 329 PEMRFRFTSPHPKDFPDELLYLMRDR--HNICKLIHLPAQS-GS---TEVLERMKRGY-- 484
           PE+R R  S   KDF  EL Y  RD+   +I KL   P  + GS   TE + +M+  Y  
Sbjct: 393 PEVRRRLASLSEKDFQRELPYKERDKIQRDILKLPLFPTTTIGSFPQTEDVRKMRTAYRT 452

Query: 485 ---TREAYLELV-QKIRNVI---PDVGL 547
              + E Y   + QKI+  I    D+GL
Sbjct: 453 GKISEEEYKNFIKQKIKYAIEVQEDIGL 480

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>YDTE_SCHPO (O14219) Hypothetical protein C6B12.14c in chromosome I|
          Length = 154

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +2

Query: 440 QSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSDFISGFCEE 580
           Q+ +TEVL+  K GY  +A  E+++ I +     G S DFIS +C E
Sbjct: 40  QASTTEVLKAQKAGY-NQALREVLELIES-----GASIDFISQYCLE 80

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>LEU3_BUCUO (Q9EVI1) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 364

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
 Frame = +2

Query: 203 SEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFPDE 382
           SE++ L P ++  + +GF   C  + TG  +        LE   + + F         D 
Sbjct: 115 SELKHLSPLRSNIVRDGFDILCIRELTGGIYFGQPSGRRLEKNNIEYAF---------DT 165

Query: 383 LLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYL--ELVQKIRNVIPDVGLSSD 556
            +Y   + + I  L    AQS S +V    K      + L  E+VQK+    PDV LS  
Sbjct: 166 EIYYDYEINRIAHLAFQLAQSRSHKVCSIDKSNVLNSSILWKEIVQKVSKNYPDVDLSHL 225

Query: 557 FI 562
           +I
Sbjct: 226 YI 227

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>GLGB_COREF (Q8FQ12) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 731

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 22/82 (26%), Positives = 41/82 (50%)
 Frame = +2

Query: 137 LWYAGVKEVMLLGQNVNSYNDTSEVEELEPGKNWQLSEGFSSRCKVKNTGLRFADLLDQL 316
           +W    K+++ +GQ +   ++ SE  EL     W + EG+       + G+  +DL+ +L
Sbjct: 560 MWAHPGKKLLFMGQEIGQRDEWSEAHELP----WGVVEGWQGE---YHEGI--SDLVREL 610

Query: 317 SLEYPEMRFRFTSPHPKDFPDE 382
           +  Y E+    T+ H +DF  E
Sbjct: 611 NSTYKEV----TALHQRDFSGE 628

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>SYD_THETH (P36419) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 580

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
 Frame = +2

Query: 272 VKNTGLRFADLLDQLSLEYPE-------MRFRFTSPHPKDFP 376
           +K  G RF  ++D   LE+ E       M   FTSPHP+D P
Sbjct: 413 LKREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLP 454

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>SYD_THET8 (Q5SKD2) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 580

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
 Frame = +2

Query: 272 VKNTGLRFADLLDQLSLEYPE-------MRFRFTSPHPKDFP 376
           +K  G RF  ++D   LE+ E       M   FTSPHP+D P
Sbjct: 413 LKREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLP 454

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>SYD_THET2 (Q72KH6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 580

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
 Frame = +2

Query: 272 VKNTGLRFADLLDQLSLEYPE-------MRFRFTSPHPKDFP 376
           +K  G RF  ++D   LE+ E       M   FTSPHP+D P
Sbjct: 413 LKREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLP 454

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>PK3CD_HUMAN (O00329) Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic|
           subunit delta isoform (EC 2.7.1.153) (PI3-kinase p110
           subunit delta) (PtdIns-3-kinase p110) (PI3K) (p110delta)
          Length = 1044

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 353 SPHPKDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKRGYTREAYLELVQKIRNVI 532
           +PHP  +P     L   RH+ C  +    Q    E+LER   G   E   +LV K+R+ +
Sbjct: 479 APHPVYYPALEKILELGRHSECVHVTEEEQLQLREILERRGSGELYEHEKDLVWKLRHEV 538

Query: 533 PD 538
            +
Sbjct: 539 QE 540

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>IKKE_MOUSE (Q9R0T8) Inhibitor of nuclear factor kappa-B kinase epsilon subunit|
           (EC 2.7.11.1) (I kappa-B kinase epsilon) (IkBKE)
           (IKK-epsilon) (IKK-E) (Inducible I kappa-B kinase)
           (IKK-i)
          Length = 717

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 18/59 (30%), Positives = 33/59 (55%)
 Frame = +2

Query: 302 LLDQLSLEYPEMRFRFTSPHPKDFPDELLYLMRDRHNICKLIHLPAQSGSTEVLERMKR 478
           LLD+ S +  E+  +  +PHP   P +L++ M++  N  KL+    Q  +  ++ER+ R
Sbjct: 653 LLDRASEQGAEVSPQPMAPHPGPDPKDLVFHMQELCNDMKLLAFDLQD-NNRLIERLHR 710

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>PHOU_XYLFA (Q9PBJ9) Phosphate transport system protein phoU|
          Length = 236

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +2

Query: 272 VKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFPDELLYLMRDRHNICKLIHL 433
           V+N+ L +++  +Q++ +  E   R  + +   F + L Y+M D  NI   IHL
Sbjct: 137 VRNSLLSYSNKDEQIATKVRENDARLDAQYTALFRELLTYMMEDTRNITPCIHL 190

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>H2B_ACRFO (P35067) Histone H2B|
          Length = 125

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 437 AQSGSTEVLERMKRGYTREAYLELVQKI-RNVIPDVGLSS 553
           A+SG+ E  +R +RG  +E+Y   + K+ + V PD G+SS
Sbjct: 18  AKSGTAETAKR-RRGKRKESYAIYIYKVLKQVHPDTGISS 56

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>HNRL1_MOUSE (Q8VDM6) Heterogeneous nuclear ribonucleoprotein U-like protein 1|
          Length = 859

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +2

Query: 272 VKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFPDELLYLMRDRHNICKLIHLPAQSG 448
           VK T     D+ D   LE   M+  FT P   DF DE+L++   R    KL+    + G
Sbjct: 544 VKRTDEEGKDVPDHAVLE---MKANFTLPDVGDFLDEVLFIELQREEADKLVRQYNEEG 599

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>DHE2_PEPAS (P28997) NAD-specific glutamate dehydrogenase (EC 1.4.1.2)|
           (NAD-GDH)
          Length = 421

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 434 PAQSGSTEVLERMKRGYTREAYLELVQKIRNVIPDVGLSSDFISGFCEE 580
           PA+    E LE++ RG+ R  Y  L  +I    PDV  +   +S F +E
Sbjct: 113 PAELSERE-LEQLSRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDE 160

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>PHOU_XYLFT (Q87C87) Phosphate transport system protein phoU|
          Length = 240

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 272 VKNTGLRFADLLDQLSLEYPEMRFRFTSPHPKDFPDELLYLMRDRHNICKLIHL 433
           V+N+ L +++  +Q++    E   R  + +   F + L Y+M D  NI   IHL
Sbjct: 137 VRNSLLSYSNKDEQIATNVRENDARLDAQYTALFRELLTYMMEDTRNITPCIHL 190


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,319,788
Number of Sequences: 219361
Number of extensions: 1857859
Number of successful extensions: 5027
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 4830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4964
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result