ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags10j04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK066319.1| Oryza sativa (japonica cultivar-group) cDNA clon... 599 e-168
2gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome... 575 e-161
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 575 e-161
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 575 e-161
5dbj|AP006712.1| Lotus japonicus genomic DNA, chromosome 2, clone... 80 1e-11
6dbj|AB120535.2| Nicotiana tabacum NtCAPL mRNA, complete cds 76 1e-10
7gb|BT013845.1| Lycopersicon esculentum clone 132802F, mRNA sequence 68 4e-08
8gb|AC136451.9| Medicago truncatula clone mth2-17d19, complete se... 62 2e-06
9gb|AY462284.1| Homo sapiens CDK5 regulatory subunit associated p... 48 0.034
10gb|AY462283.1| Homo sapiens CDK5 regulatory subunit associated p... 48 0.034
11ref|NM_016408.2| Homo sapiens CDK5 regulatory subunit associated... 48 0.034
12ref|NM_016082.3| Homo sapiens CDK5 regulatory subunit associated... 48 0.034
13emb|AL355392.7| Human DNA sequence from clone RP5-1187J4 on chro... 48 0.034
14dbj|AK027449.1| Homo sapiens cDNA FLJ14543 fis, clone NT2RM2001524 48 0.034
15dbj|AK023992.1| Homo sapiens cDNA FLJ13930 fis, clone Y79AA10007... 48 0.034
16emb|CR592631.1| full-length cDNA clone CS0DD008YA07 of Neuroblas... 48 0.034
17gb|AF161516.1|AF161516 Homo sapiens HSPC167 mRNA, complete cds 48 0.034
18dbj|AK222745.1| Homo sapiens mRNA for CDK5 regulatory subunit as... 48 0.034
19gb|AF152097.1|AF152097 Homo sapiens CGI-05 protein mRNA, complet... 48 0.034
20gb|BC050706.1| Homo sapiens CDK5 regulatory subunit associated p... 48 0.034
21dbj|AK113975.1| Ciona intestinalis cDNA, clone:cicl019l23, full ... 46 0.13
22ref|NM_001017192.2| Xenopus tropicalis hypothetical protein LOC5... 44 0.53
23gb|AC097500.3| Homo sapiens BAC clone RP11-335G13 from 2, comple... 44 0.53
24emb|CR760597.2| Xenopus tropicalis finished cDNA, clone TEgg054g12 44 0.53
25gb|BC025132.1| Mus musculus CDK5 regulatory subunit associated p... 42 2.1
26gb|AY266303.2| Bacteriophage Aeh1, complete genome 42 2.1
27emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, ... 42 2.1
28gb|BT008395.1| Arabidopsis thaliana At4g36390 gene, complete cds 42 2.1
29dbj|AK132982.1| Mus musculus adult male testis cDNA, RIKEN full-... 42 2.1
30ref|NM_025876.1| Mus musculus CDK5 regulatory subunit associated... 42 2.1
31gb|AC160415.4| Mus musculus 10 BAC RP24-410I24 (Roswell Park Can... 42 2.1
32dbj|AK088517.1| Mus musculus 2 days neonate thymus thymic cells ... 42 2.1
33dbj|AK010097.1| Mus musculus adult male tongue cDNA, RIKEN full-... 42 2.1
34dbj|AK010081.1| Mus musculus adult male tongue cDNA, RIKEN full-... 42 2.1
35gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 42 2.1
36gb|AC129935.8| Mus musculus chromosome 15, clone RP23-269P8, com... 42 2.1
37gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 42 2.1
38emb|AL732601.16| Mouse DNA sequence from clone RP23-154J12 on ch... 42 2.1
39gb|AC106834.9| Mus musculus chromosome 19, clone RP24-132H7, com... 40 8.3
40gb|AC147098.2| Mus musculus BAC clone RP23-452E7 from chromosome... 40 8.3
41gb|AC162612.2| Mus musculus chromosome 19, clone RP24-334K20, co... 40 8.3
42gb|AC110090.6| Mus musculus BAC clone RP23-27L4 from chromosome ... 40 8.3
43gb|AC015658.11| Mus musculus chromosome 1, clone RP23-130F18, co... 40 8.3
44emb|AL590989.15| Human DNA sequence from clone RP11-149P14 on ch... 40 8.3
45gb|AC131565.1| Homo sapiens chromosome 5 clone RP11-1273L8, comp... 40 8.3
46gb|AC151836.3| Mus musculus BAC clone RP23-359F5 from chromosome... 40 8.3
47gb|AC114959.2| Homo sapiens chromosome 5 clone RP11-170L13, comp... 40 8.3
48dbj|AK143143.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 40 8.3
49gb|AC011368.5| Homo sapiens chromosome 5 clone CTB-104K23, compl... 40 8.3
50emb|CR361553.4| Mouse DNA sequence from clone RP24-456I14 on chr... 40 8.3
51gb|AC022410.5| Homo sapiens chromosome 5 clone CTB-17K15, comple... 40 8.3
52gb|AC140677.1| Homo sapiens chromosome 5 clone CTC-778L3, comple... 40 8.3
53gb|AC083897.4| Homo sapiens BAC clone CTD-2174D21 from 2, comple... 40 8.3
54dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 40 8.3
55emb|BX119975.7| Zebrafish DNA sequence from clone CH211-200A16 i... 40 8.3
56gb|AC116475.7| Mus musculus chromosome 8, clone RP23-386N2, comp... 40 8.3
57gb|AC139294.4| Mus musculus BAC clone RP24-239E14 from 14, compl... 40 8.3
58gb|AC111202.5| Mus musculus BAC clone RP23-338I3 from 9, complet... 40 8.3 
>dbj|AK066319.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067A17, full
            insert sequence
          Length = 2156

 Score =  599 bits (302), Expect = e-168
 Identities = 530/606 (87%)
 Strand = Plus / Plus

                                                                        
Query: 2    tctgacaattcggttacggcgttcgtgtcagttatgaggggttgtaacaatatgtgctcg 61
            ||||||||||| || || || || || ||| ||||||||||||| |||||||||||||| 
Sbjct: 746  tctgacaattcagtgaccgcatttgtatcaattatgaggggttgcaacaatatgtgctcc 805

                                                                        
Query: 62   ttttgcattgttcccttcactagaggcagggagaggtcacgcccagtatcttctgttgtc 121
            ||||| || ||||| ||||||||||| ||||| ||||| || ||||| || ||  |||||
Sbjct: 806  ttttgtatcgttcctttcactagaggtagggaaaggtcccgtccagtgtcctcaattgtc 865

                                                                        
Query: 122  cgagaagttggtgagctctggtatgctggcgtaaaagaagtaatgcttcttggtcagaat 181
            ||||||||||| ||||||||| | || ||||| || ||||||||||||||||||||||| 
Sbjct: 866  cgagaagttggggagctctggaaagcaggcgtgaaggaagtaatgcttcttggtcagaac 925

                                                                        
Query: 182  gtaaacagttataatgatacttctgaagttgaggagttagagcctggtaaaaactggcag 241
            |||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 926  gtaaacagttataacgacacttctgaagttgaggaattagaacctggtaaaaactgggag 985

                                                                        
Query: 242  ctcagcgaaggattttccagcaggtgcaaagtgaagaatacggggttgcgctttgccgat 301
            ||||| ||||| ||||| |||| |||||| |||||||||| ||||||||| ||||| |||
Sbjct: 986  ctcagtgaagggttttctagcatgtgcaaggtgaagaatatggggttgcgttttgctgat 1045

                                                                        
Query: 302  ctcctggatcagttgtctctggaataccctgagatgcgattcaggtttacctctccacat 361
            |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 1046 ctcctggatcagttatctttggaataccctgagatgcggttcaggtttacctctccgcat 1105

                                                                        
Query: 362  ccaaaggattttcctgatgagctgctatatttgatgcgggataggcacaatatttgcaaa 421
            ||||||||||  || || ||||| |||||||| |||||||||||||||||| ||||||||
Sbjct: 1106 ccaaaggattacccagacgagcttctatatttaatgcgggataggcacaatgtttgcaaa 1165

                                                                        
Query: 422  cttattcacttgcctgcacaatcaggcagcacagaggtgctggaacgaatgaagcggggt 481
            ||||||||  |||| || |||||||||||| |||  ||||||||||| |||   ||||||
Sbjct: 1166 cttattcatatgccagctcaatcaggcagctcagcagtgctggaacgtatgcgtcggggt 1225

                                                                        
Query: 482  tatactcgagaagcatatttggagcttgtacagaaaatccgtaatgtcattccagatgtt 541
            |||||| |||| ||||| ||||||||||| ||||||||||||| | ||||||||||||||
Sbjct: 1226 tatactagagaggcatacttggagcttgtgcagaaaatccgtagtatcattccagatgtt 1285

                                                                        
Query: 542  gggctaagcagtgatttcataagtggcttctgtgaagagacagaagatgaccatgccgac 601
            ||| |||||||||||||||||||||| || |||| |||||||||||| || ||||| || 
Sbjct: 1286 gggttaagcagtgatttcataagtggtttttgtggagagacagaagaggaacatgctgag 1345

                  
Query: 602  actctt 607
            ||||||
Sbjct: 1346 actctt 1351
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>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0074L11, complete sequence
          Length = 180703

 Score =  575 bits (290), Expect = e-161
 Identities = 497/566 (87%)
 Strand = Plus / Minus

                                                                         
Query: 2     tctgacaattcggttacggcgttcgtgtcagttatgaggggttgtaacaatatgtgctcg 61
             ||||||||||| || || || || || ||| ||||||||||||| |||||||||||||| 
Sbjct: 61847 tctgacaattcagtgaccgcatttgtatcaattatgaggggttgcaacaatatgtgctcc 61788

                                                                         
Query: 62    ttttgcattgttcccttcactagaggcagggagaggtcacgcccagtatcttctgttgtc 121
             ||||| || ||||| ||||||||||| ||||| ||||| || ||||| || ||  |||||
Sbjct: 61787 ttttgtatcgttcctttcactagaggtagggaaaggtcccgtccagtgtcctcaattgtc 61728

                                                                         
Query: 122   cgagaagttggtgagctctggtatgctggcgtaaaagaagtaatgcttcttggtcagaat 181
             ||||||||||| ||||||||| | || ||||| || ||||||||||||||||||||||| 
Sbjct: 61727 cgagaagttggggagctctggaaagcaggcgtgaaggaagtaatgcttcttggtcagaac 61668

                                                                         
Query: 182   gtaaacagttataatgatacttctgaagttgaggagttagagcctggtaaaaactggcag 241
             |||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 61667 gtaaacagttataacgacacttctgaagttgaggaattagaacctggtaaaaactgggag 61608

                                                                         
Query: 242   ctcagcgaaggattttccagcaggtgcaaagtgaagaatacggggttgcgctttgccgat 301
             ||||| ||||| ||||| |||| |||||| |||||||||| ||||||||| ||||| |||
Sbjct: 61607 ctcagtgaagggttttctagcatgtgcaaggtgaagaatatggggttgcgttttgctgat 61548

                                                                         
Query: 302   ctcctggatcagttgtctctggaataccctgagatgcgattcaggtttacctctccacat 361
             |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 61547 ctcctggatcagttatctttggaataccctgagatgcggttcaggtttacctctccgcat 61488

                                                                         
Query: 362   ccaaaggattttcctgatgagctgctatatttgatgcgggataggcacaatatttgcaaa 421
             ||||||||||  || || ||||| |||||||| |||||||||||||||||| ||||||||
Sbjct: 61487 ccaaaggattacccagacgagcttctatatttaatgcgggataggcacaatgtttgcaaa 61428

                                                                         
Query: 422   cttattcacttgcctgcacaatcaggcagcacagaggtgctggaacgaatgaagcggggt 481
             ||||||||  |||| || |||||||||||| |||  ||||||||||| |||   ||||||
Sbjct: 61427 cttattcatatgccagctcaatcaggcagctcagcagtgctggaacgtatgcgtcggggt 61368

                                                                         
Query: 482   tatactcgagaagcatatttggagcttgtacagaaaatccgtaatgtcattccagatgtt 541
             |||||| |||| ||||| ||||||||||| ||||||||||||| | ||||||||||||||
Sbjct: 61367 tatactagagaggcatacttggagcttgtgcagaaaatccgtagtatcattccagatgtt 61308

                                       
Query: 542   gggctaagcagtgatttcataagtgg 567
             ||| ||||||||||||||||||||||
Sbjct: 61307 gggttaagcagtgatttcataagtgg 61282
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  575 bits (290), Expect = e-161
 Identities = 497/566 (87%)
 Strand = Plus / Minus

                                                                            
Query: 2        tctgacaattcggttacggcgttcgtgtcagttatgaggggttgtaacaatatgtgctcg 61
                ||||||||||| || || || || || ||| ||||||||||||| |||||||||||||| 
Sbjct: 21709794 tctgacaattcagtgaccgcatttgtatcaattatgaggggttgcaacaatatgtgctcc 21709735

                                                                            
Query: 62       ttttgcattgttcccttcactagaggcagggagaggtcacgcccagtatcttctgttgtc 121
                ||||| || ||||| ||||||||||| ||||| ||||| || ||||| || ||  |||||
Sbjct: 21709734 ttttgtatcgttcctttcactagaggtagggaaaggtcccgtccagtgtcctcaattgtc 21709675

                                                                            
Query: 122      cgagaagttggtgagctctggtatgctggcgtaaaagaagtaatgcttcttggtcagaat 181
                ||||||||||| ||||||||| | || ||||| || ||||||||||||||||||||||| 
Sbjct: 21709674 cgagaagttggggagctctggaaagcaggcgtgaaggaagtaatgcttcttggtcagaac 21709615

                                                                            
Query: 182      gtaaacagttataatgatacttctgaagttgaggagttagagcctggtaaaaactggcag 241
                |||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 21709614 gtaaacagttataacgacacttctgaagttgaggaattagaacctggtaaaaactgggag 21709555

                                                                            
Query: 242      ctcagcgaaggattttccagcaggtgcaaagtgaagaatacggggttgcgctttgccgat 301
                ||||| ||||| ||||| |||| |||||| |||||||||| ||||||||| ||||| |||
Sbjct: 21709554 ctcagtgaagggttttctagcatgtgcaaggtgaagaatatggggttgcgttttgctgat 21709495

                                                                            
Query: 302      ctcctggatcagttgtctctggaataccctgagatgcgattcaggtttacctctccacat 361
                |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 21709494 ctcctggatcagttatctttggaataccctgagatgcggttcaggtttacctctccgcat 21709435

                                                                            
Query: 362      ccaaaggattttcctgatgagctgctatatttgatgcgggataggcacaatatttgcaaa 421
                ||||||||||  || || ||||| |||||||| |||||||||||||||||| ||||||||
Sbjct: 21709434 ccaaaggattacccagacgagcttctatatttaatgcgggataggcacaatgtttgcaaa 21709375

                                                                            
Query: 422      cttattcacttgcctgcacaatcaggcagcacagaggtgctggaacgaatgaagcggggt 481
                ||||||||  |||| || |||||||||||| |||  ||||||||||| |||   ||||||
Sbjct: 21709374 cttattcatatgccagctcaatcaggcagctcagcagtgctggaacgtatgcgtcggggt 21709315

                                                                            
Query: 482      tatactcgagaagcatatttggagcttgtacagaaaatccgtaatgtcattccagatgtt 541
                |||||| |||| ||||| ||||||||||| ||||||||||||| | ||||||||||||||
Sbjct: 21709314 tatactagagaggcatacttggagcttgtgcagaaaatccgtagtatcattccagatgtt 21709255

                                          
Query: 542      gggctaagcagtgatttcataagtgg 567
                ||| ||||||||||||||||||||||
Sbjct: 21709254 gggttaagcagtgatttcataagtgg 21709229
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  575 bits (290), Expect = e-161
 Identities = 497/566 (87%)
 Strand = Plus / Minus

                                                                            
Query: 2        tctgacaattcggttacggcgttcgtgtcagttatgaggggttgtaacaatatgtgctcg 61
                ||||||||||| || || || || || ||| ||||||||||||| |||||||||||||| 
Sbjct: 22019993 tctgacaattcagtgaccgcatttgtatcaattatgaggggttgcaacaatatgtgctcc 22019934

                                                                            
Query: 62       ttttgcattgttcccttcactagaggcagggagaggtcacgcccagtatcttctgttgtc 121
                ||||| || ||||| ||||||||||| ||||| ||||| || ||||| || ||  |||||
Sbjct: 22019933 ttttgtatcgttcctttcactagaggtagggaaaggtcccgtccagtgtcctcaattgtc 22019874

                                                                            
Query: 122      cgagaagttggtgagctctggtatgctggcgtaaaagaagtaatgcttcttggtcagaat 181
                ||||||||||| ||||||||| | || ||||| || ||||||||||||||||||||||| 
Sbjct: 22019873 cgagaagttggggagctctggaaagcaggcgtgaaggaagtaatgcttcttggtcagaac 22019814

                                                                            
Query: 182      gtaaacagttataatgatacttctgaagttgaggagttagagcctggtaaaaactggcag 241
                |||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 22019813 gtaaacagttataacgacacttctgaagttgaggaattagaacctggtaaaaactgggag 22019754

                                                                            
Query: 242      ctcagcgaaggattttccagcaggtgcaaagtgaagaatacggggttgcgctttgccgat 301
                ||||| ||||| ||||| |||| |||||| |||||||||| ||||||||| ||||| |||
Sbjct: 22019753 ctcagtgaagggttttctagcatgtgcaaggtgaagaatatggggttgcgttttgctgat 22019694

                                                                            
Query: 302      ctcctggatcagttgtctctggaataccctgagatgcgattcaggtttacctctccacat 361
                |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 22019693 ctcctggatcagttatctttggaataccctgagatgcggttcaggtttacctctccgcat 22019634

                                                                            
Query: 362      ccaaaggattttcctgatgagctgctatatttgatgcgggataggcacaatatttgcaaa 421
                ||||||||||  || || ||||| |||||||| |||||||||||||||||| ||||||||
Sbjct: 22019633 ccaaaggattacccagacgagcttctatatttaatgcgggataggcacaatgtttgcaaa 22019574

                                                                            
Query: 422      cttattcacttgcctgcacaatcaggcagcacagaggtgctggaacgaatgaagcggggt 481
                ||||||||  |||| || |||||||||||| |||  ||||||||||| |||   ||||||
Sbjct: 22019573 cttattcatatgccagctcaatcaggcagctcagcagtgctggaacgtatgcgtcggggt 22019514

                                                                            
Query: 482      tatactcgagaagcatatttggagcttgtacagaaaatccgtaatgtcattccagatgtt 541
                |||||| |||| ||||| ||||||||||| ||||||||||||| | ||||||||||||||
Sbjct: 22019513 tatactagagaggcatacttggagcttgtgcagaaaatccgtagtatcattccagatgtt 22019454

                                          
Query: 542      gggctaagcagtgatttcataagtgg 567
                ||| ||||||||||||||||||||||
Sbjct: 22019453 gggttaagcagtgatttcataagtgg 22019428
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>dbj|AP006712.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT17E09, TM0627,
             complete sequence
          Length = 101220

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                         
Query: 35    atgaggggttgtaacaatatgtgctcgttttgcattgttcccttcactagaggcagggag 94
             ||||||||||| |||||||||||||| ||||| ||||| || |||||||||||||| |||
Sbjct: 84981 atgaggggttgcaacaatatgtgctcattttgtattgtacctttcactagaggcagagag 84922

                     
Query: 95    aggtcacg 102
              |||||||
Sbjct: 84921 cggtcacg 84914



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 186/239 (77%)
 Strand = Plus / Minus

                                                                         
Query: 329   cctgagatgcgattcaggtttacctctccacatccaaaggattttcctgatgagctgcta 388
             ||||||||||||||||| || ||||| ||||| || || |||||||| || ||  |||| 
Sbjct: 84684 cctgagatgcgattcagattcacctccccacaccctaaagattttccagacgaattgctc 84625

                                                                         
Query: 389   tatttgatgcgggataggcacaatatttgcaaacttattcacttgcctgcacaatcaggc 448
             ||| | ||||| || || || ||||| |||||| |||| || || ||||||||| |||| 
Sbjct: 84624 tatcttatgcgagaaagacataatatatgcaaagttatacatttacctgcacaaacaggt 84565

                                                                         
Query: 449   agcacagaggtgctggaacgaatgaagcggggttatactcgagaagcatatttggagctt 508
             || |     ||||| ||  ||||||  || || || |||||||| || || ||||| |||
Sbjct: 84564 agtagcactgtgcttgagagaatgagacgaggatacactcgagaggcttacttggatctt 84505

                                                                        
Query: 509   gtacagaaaatccgtaatgtcattccagatgttgggctaagcagtgatttcataagtgg 567
             || || ||||| || | ||| ||||||||||| ||  ||||||||||||| ||| ||||
Sbjct: 84504 gtgcacaaaattcgaagtgttattccagatgtgggcttaagcagtgattttatatgtgg 84446



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                 
Query: 155   aaagaagtaatgcttcttggtcagaatgtaaacagttataatgatacttctg 206
             ||||||||||  |||||||| ||||| || ||||| ||||||||||| ||||
Sbjct: 84861 aaagaagtaacacttcttggccagaacgtgaacagctataatgatacatctg 84810
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>dbj|AB120535.2| Nicotiana tabacum NtCAPL mRNA, complete cds
          Length = 2160

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                       
Query: 35  atgaggggttgtaacaatatgtgctcgttttgcattgttcccttcactagaggcagggag 94
           ||||||||||| || ||||||||||| || ||||||||||||||||||||||| || || 
Sbjct: 891 atgaggggttgcaataatatgtgctcattctgcattgttcccttcactagagggagagaa 950

                         
Query: 95  aggtcacgcccagt 108
            |||| ||||||||
Sbjct: 951 cggtctcgcccagt 964



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                           
Query: 167  cttcttggtcagaatgtaaacagttataatgatacttctgaagttga 213
            |||||||| ||||||||||| || ||||||||||| |||| ||||||
Sbjct: 1023 cttcttggccagaatgtaaatagctataatgatacatctggagttga 1069
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>gb|BT013845.1| Lycopersicon esculentum clone 132802F, mRNA sequence
          Length = 2181

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                       
Query: 35  atgaggggttgtaacaatatgtgctcgttttgcattgttcccttcactagaggcagggag 94
           ||||||||||| || |||||||| || || ||||||||||||||||||||||| || || 
Sbjct: 891 atgaggggttgcaataatatgtgttcattctgcattgttcccttcactagagggagagaa 950

                         
Query: 95  aggtcacgcccagt 108
            |||| ||||||||
Sbjct: 951 cggtctcgcccagt 964



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 80/97 (82%)
 Strand = Plus / Plus

                                                                        
Query: 356  ccacatccaaaggattttcctgatgagctgctatatttgatgcgggataggcacaatatt 415
            |||||||| || |||||||| |||||  || | ||| | |||||||| ||| ||||||| 
Sbjct: 1215 ccacatcctaaagattttccagatgatttgttgtatgtaatgcgggacaggtacaatatc 1274

                                                 
Query: 416  tgcaaacttattcacttgcctgcacaatcaggcagca 452
            ||||||   ||||| ||||| ||||||||||||||||
Sbjct: 1275 tgcaaaagcattcatttgccagcacaatcaggcagca 1311



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                            
Query: 166  gcttcttggtcagaatgtaaacagttataatgatacttctgaagttga 213
            |||||| || || |||||||| || ||||||||||| |||| ||||||
Sbjct: 1022 gcttctcggccaaaatgtaaatagctataatgatacatctggagttga 1069
to top
>gb|AC136451.9| Medicago truncatula clone mth2-17d19, complete sequence
          Length = 132473

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                        
Query: 29    tcagttatgaggggttgtaacaatatgtgctcgttttgcattgttcccttcactagagg 87
             ||||| ||||||||||| ||||||||||| |||||||| ||||| || || ||||||||
Sbjct: 30446 tcagtgatgaggggttgcaacaatatgtgttcgttttgtattgtaccttttactagagg 30388



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 96/119 (80%)
 Strand = Plus / Minus

                                                                         
Query: 329   cctgagatgcgattcaggtttacctctccacatccaaaggattttcctgatgagctgcta 388
             ||||||||||| ||||| || || |||||||| || || |||| ||| ||||| ||||| 
Sbjct: 30143 cctgagatgcgtttcagattcacgtctccacaccctaaagattatccagatgaactgctt 30084

                                                                        
Query: 389   tatttgatgcgggataggcacaatatttgcaaacttattcacttgcctgcacaatcagg 447
             ||| | |||||||| || || ||||| |||||| | || || || ||||| ||||||||
Sbjct: 30083 tatattatgcgggaaagacataatatatgcaaattgatacatttacctgcccaatcagg 30025



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 530   attccagatgttgggctaagcagtgatttcat 561
             ||||||||||| |  |||||||||||||||||
Sbjct: 29942 attccagatgtggccctaagcagtgatttcat 29911
to top
>gb|AY462284.1| Homo sapiens CDK5 regulatory subunit associated protein 1 transcript
            variant 4 mRNA, complete cds, alternatively spliced
          Length = 1792

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 347  tttacctctccacatccaaaggattttcctgatgag 382
            ||||||||||| || || ||||||||||||||||||
Sbjct: 1185 tttacctctccccaccccaaggattttcctgatgag 1220
to top
>gb|AY462283.1| Homo sapiens CDK5 regulatory subunit associated protein 1 transcript
            variant 3 mRNA, complete cds, alternatively spliced
          Length = 1923

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 347  tttacctctccacatccaaaggattttcctgatgag 382
            ||||||||||| || || ||||||||||||||||||
Sbjct: 1185 tttacctctccccaccccaaggattttcctgatgag 1220
to top
>ref|NM_016408.2| Homo sapiens CDK5 regulatory subunit associated protein 1 (CDK5RAP1),
            transcript variant 1, mRNA
          Length = 2104

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 347  tttacctctccacatccaaaggattttcctgatgag 382
            ||||||||||| || || ||||||||||||||||||
Sbjct: 1196 tttacctctccccaccccaaggattttcctgatgag 1231
to top
>ref|NM_016082.3| Homo sapiens CDK5 regulatory subunit associated protein 1 (CDK5RAP1),
            transcript variant 2, mRNA
          Length = 1944

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 347  tttacctctccacatccaaaggattttcctgatgag 382
            ||||||||||| || || ||||||||||||||||||
Sbjct: 1048 tttacctctccccaccccaaggattttcctgatgag 1083
to top
>emb|AL355392.7| Human DNA sequence from clone RP5-1187J4 on chromosome 20q11.1-11.23
             Contains the gene for a novel protein similar to mouse von
             Ebner salivary gland protein, a novel pseudogene, the gene
             for a novel protein similar to rat RYF3, the CDK5RAP1 gene
             for CDK5 regulatory subunit associated protein 1, the
             SNTA1 gene for alpha syntrophin (dystrophin-associated
             protein A1, 59kD, acidic component) and two CpG islands,
             complete sequence
          Length = 159440

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 347   tttacctctccacatccaaaggattttcctgatgag 382
             ||||||||||| || || ||||||||||||||||||
Sbjct: 85379 tttacctctccccaccccaaggattttcctgatgag 85344
to top
>dbj|AK027449.1| Homo sapiens cDNA FLJ14543 fis, clone NT2RM2001524
          Length = 1928

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 347  tttacctctccacatccaaaggattttcctgatgag 382
            ||||||||||| || || ||||||||||||||||||
Sbjct: 1034 tttacctctccccaccccaaggattttcctgatgag 1069
to top
>dbj|AK023992.1| Homo sapiens cDNA FLJ13930 fis, clone Y79AA1000748, moderately
            similar to Rattus norvegicus clone C42 CDK5
            activator-binding protein mRNA
          Length = 2078

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 347  tttacctctccacatccaaaggattttcctgatgag 382
            ||||||||||| || || ||||||||||||||||||
Sbjct: 1184 tttacctctccccaccccaaggattttcctgatgag 1219
to top
>emb|CR592631.1| full-length cDNA clone CS0DD008YA07 of Neuroblastoma Cot
            50-normalized of Homo sapiens (human)
          Length = 1918

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 347  tttacctctccacatccaaaggattttcctgatgag 382
            ||||||||||| || || ||||||||||||||||||
Sbjct: 1047 tttacctctccccaccccaaggattttcctgatgag 1082
to top
>gb|AF161516.1|AF161516 Homo sapiens HSPC167 mRNA, complete cds
          Length = 2091

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 347  tttacctctccacatccaaaggattttcctgatgag 382
            ||||||||||| || || ||||||||||||||||||
Sbjct: 1182 tttacctctccccaccccaaggattttcctgatgag 1217
to top
>dbj|AK222745.1| Homo sapiens mRNA for CDK5 regulatory subunit associated protein 1
            isoform a variant, clone: DMC05378
          Length = 2095

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 347  tttacctctccacatccaaaggattttcctgatgag 382
            ||||||||||| || || ||||||||||||||||||
Sbjct: 1184 tttacctctccccaccccaaggattttcctgatgag 1219
to top
>gb|AF152097.1|AF152097 Homo sapiens CGI-05 protein mRNA, complete cds
          Length = 2115

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 347  tttacctctccacatccaaaggattttcctgatgag 382
            ||||||||||| || || ||||||||||||||||||
Sbjct: 1212 tttacctctccccaccccaaggattttcctgatgag 1247
to top
>gb|BC050706.1| Homo sapiens CDK5 regulatory subunit associated protein 1, transcript
            variant 1, mRNA (cDNA clone MGC:60311 IMAGE:4418659),
            complete cds
          Length = 2082

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 347  tttacctctccacatccaaaggattttcctgatgag 382
            ||||||||||| || || ||||||||||||||||||
Sbjct: 1177 tttacctctccccaccccaaggattttcctgatgag 1212
to top
>dbj|AK113975.1| Ciona intestinalis cDNA, clone:cicl019l23, full insert sequence
          Length = 2142

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 353  tctccacatccaaaggattttcctgatgagctgct 387
            ||||| |||||||| ||||||||||||||| ||||
Sbjct: 1225 tctccgcatccaaaagattttcctgatgaggtgct 1259
to top
>ref|NM_001017192.2| Xenopus tropicalis hypothetical protein LOC549946 (LOC549946), mRNA
          Length = 2111

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 548  agcagtgatttcataagtggcttctgtgaagagacaga 585
            |||||||||||||| | ||| |||||||| ||||||||
Sbjct: 1404 agcagtgatttcattactggtttctgtgaggagacaga 1441
to top
>gb|AC097500.3| Homo sapiens BAC clone RP11-335G13 from 2, complete sequence
          Length = 180215

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 160    agtaatgcttcttggtcagaat 181
              ||||||||||||||||||||||
Sbjct: 167239 agtaatgcttcttggtcagaat 167218
to top
>emb|CR760597.2| Xenopus tropicalis finished cDNA, clone TEgg054g12
          Length = 2111

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 548  agcagtgatttcataagtggcttctgtgaagagacaga 585
            |||||||||||||| | ||| |||||||| ||||||||
Sbjct: 1404 agcagtgatttcattactggtttctgtgaggagacaga 1441
to top
>gb|BC025132.1| Mus musculus CDK5 regulatory subunit associated protein 1, mRNA (cDNA
            clone MGC:35699 IMAGE:3666341), complete cds
          Length = 1951

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 350  acctctccacatccaaaggattttcctgatgag 382
            |||||||| || || ||||||||||||||||||
Sbjct: 1095 acctctcctcaccccaaggattttcctgatgag 1127
to top
>gb|AY266303.2| Bacteriophage Aeh1, complete genome
          Length = 233234

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 382    gctgctatatttgatgcggga 402
              |||||||||||||||||||||
Sbjct: 224595 gctgctatatttgatgcggga 224615
to top
>emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85
          Length = 198750

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 90/113 (79%)
 Strand = Plus / Minus

                                                                         
Query: 332   gagatgcgattcaggtttacctctccacatccaaaggattttcctgatgagctgctatat 391
             |||||||| || |||||||| || || ||||| || ||||  ||||| ||| |||| |||
Sbjct: 76914 gagatgcggtttaggtttacatcgcctcatcctaaagattaccctgacgagttgctgtat 76855

                                                                  
Query: 392   ttgatgcgggataggcacaatatttgcaaacttattcacttgcctgcacaatc 444
             |||||| | ||||| || ||||| ||||| || || ||  | |||||||||||
Sbjct: 76854 ttgatgagagatagacataatatctgcaatctcatccatcttcctgcacaatc 76802
to top
>gb|BT008395.1| Arabidopsis thaliana At4g36390 gene, complete cds
          Length = 1923

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 90/113 (79%)
 Strand = Plus / Plus

                                                                        
Query: 332  gagatgcgattcaggtttacctctccacatccaaaggattttcctgatgagctgctatat 391
            |||||||| || |||||||| || || ||||| || ||||  ||||| ||| |||| |||
Sbjct: 1168 gagatgcggtttaggtttacatcgcctcatcctaaagattaccctgacgagttgctgtat 1227

                                                                 
Query: 392  ttgatgcgggataggcacaatatttgcaaacttattcacttgcctgcacaatc 444
            |||||| | ||||| || ||||| ||||| || || ||  | |||||||||||
Sbjct: 1228 ttgatgagagatagacataatatctgcaatctcatccatcttcctgcacaatc 1280
to top
>dbj|AK132982.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4930542I17 product:unclassifiable, full
            insert sequence
          Length = 2311

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 188  agttataatgatacttctgaa 208
            |||||||||||||||||||||
Sbjct: 2082 agttataatgatacttctgaa 2102
to top
>ref|NM_025876.1| Mus musculus CDK5 regulatory subunit associated protein 1 (Cdk5rap1),
            mRNA
          Length = 1970

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 350  acctctccacatccaaaggattttcctgatgag 382
            |||||||| || || ||||||||||||||||||
Sbjct: 1130 acctctcctcaccccaaggattttcctgatgag 1162
to top
>gb|AC160415.4| Mus musculus 10 BAC RP24-410I24 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 144561

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 164   atgcttcttggtcagaatgta 184
             |||||||||||||||||||||
Sbjct: 67431 atgcttcttggtcagaatgta 67451
to top
>dbj|AK088517.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430019F04
            product:CDK5 regulatory subunit associated protein 1,
            full insert sequence
          Length = 1985

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 350  acctctccacatccaaaggattttcctgatgag 382
            |||||||| || || ||||||||||||||||||
Sbjct: 1139 acctctcctcaccccaaggattttcctgatgag 1171
to top
>dbj|AK010097.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
            library, clone:2310067M10 product:CDK5 ACTIVATOR-BINDING
            PROTEIN homolog [Rattus norvegicus], full insert sequence
          Length = 1970

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 350  acctctccacatccaaaggattttcctgatgag 382
            |||||||| || || ||||||||||||||||||
Sbjct: 1130 acctctcctcaccccaaggattttcctgatgag 1162
to top
>dbj|AK010081.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
            library, clone:2310066P17 product:CDK5 ACTIVATOR-BINDING
            PROTEIN homolog [Rattus norvegicus], full insert sequence
          Length = 1970

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 350  acctctccacatccaaaggattttcctgatgag 382
            |||||||| || || ||||||||||||||||||
Sbjct: 1130 acctctcctcaccccaaggattttcctgatgag 1162
to top
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 347     tttacctctccacatccaaaggattttcc 375
               ||||| ||||| |||||||||||||||||
Sbjct: 1108226 tttacttctccccatccaaaggattttcc 1108254
to top
>gb|AC129935.8| Mus musculus chromosome 15, clone RP23-269P8, complete sequence
          Length = 183894

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 188    agttataatgatacttctgaa 208
              |||||||||||||||||||||
Sbjct: 122075 agttataatgatacttctgaa 122095
to top
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 347     tttacctctccacatccaaaggattttcc 375
               ||||| ||||| |||||||||||||||||
Sbjct: 3117186 tttacttctccccatccaaaggattttcc 3117158
to top
>emb|AL732601.16| Mouse DNA sequence from clone RP23-154J12 on chromosome 2, complete
              sequence
          Length = 192345

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 350    acctctccacatccaaaggattttcctgatgag 382
              |||||||| || || ||||||||||||||||||
Sbjct: 173857 acctctcctcaccccaaggattttcctgatgag 173825
to top
>gb|AC106834.9| Mus musculus chromosome 19, clone RP24-132H7, complete sequence
          Length = 177277

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 188   agttataatgatacttctgaagtt 211
             ||||||||||||| ||||||||||
Sbjct: 14585 agttataatgataattctgaagtt 14562
to top
>gb|AC147098.2| Mus musculus BAC clone RP23-452E7 from chromosome 9, complete sequence
          Length = 199612

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 406    gcacaatatttgcaaacttattca 429
              |||| |||||||||||||||||||
Sbjct: 127460 gcaccatatttgcaaacttattca 127437
to top
>gb|AC162612.2| Mus musculus chromosome 19, clone RP24-334K20, complete sequence
          Length = 145561

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 188    agttataatgatacttctgaagtt 211
              ||||||||||||| ||||||||||
Sbjct: 118399 agttataatgataattctgaagtt 118376
to top
>gb|AC110090.6| Mus musculus BAC clone RP23-27L4 from chromosome 1, complete sequence
          Length = 218518

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    cagaatgtaaacagttataa 195
              ||||||||||||||||||||
Sbjct: 192008 cagaatgtaaacagttataa 192027
to top
>gb|AC015658.11| Mus musculus chromosome 1, clone RP23-130F18, complete sequence
          Length = 177016

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    cagaatgtaaacagttataa 195
              ||||||||||||||||||||
Sbjct: 170668 cagaatgtaaacagttataa 170649
to top
>emb|AL590989.15| Human DNA sequence from clone RP11-149P14 on chromosome 1 Contains a
             pseudogene similar to part of cytochrome b, the 5' end of
             a novel gene and a CpG island, complete sequence
          Length = 110121

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 451   cacagaggtgctggaacgaatgaa 474
             |||||||||||||||| |||||||
Sbjct: 53976 cacagaggtgctggaaggaatgaa 53953
to top
>gb|AC131565.1| Homo sapiens chromosome 5 clone RP11-1273L8, complete sequence
          Length = 181283

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    agttataatgatacttctga 207
              ||||||||||||||||||||
Sbjct: 126931 agttataatgatacttctga 126950
to top
>gb|AC151836.3| Mus musculus BAC clone RP23-359F5 from chromosome 14, complete sequence
          Length = 230502

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 573    gtgaagagacagaagatgac 592
              ||||||||||||||||||||
Sbjct: 153511 gtgaagagacagaagatgac 153492
to top
>gb|AC114959.2| Homo sapiens chromosome 5 clone RP11-170L13, complete sequence
          Length = 163805

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   agttataatgatacttctga 207
             ||||||||||||||||||||
Sbjct: 55535 agttataatgatacttctga 55516
to top
>dbj|AK143143.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130115M17 product:unclassifiable, full
            insert sequence
          Length = 5366

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 573  gtgaagagacagaagatgac 592
            ||||||||||||||||||||
Sbjct: 2221 gtgaagagacagaagatgac 2202
to top
>gb|AC011368.5| Homo sapiens chromosome 5 clone CTB-104K23, complete sequence
          Length = 113582

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  agttataatgatacttctga 207
            ||||||||||||||||||||
Sbjct: 6693 agttataatgatacttctga 6674
to top
>emb|CR361553.4| Mouse DNA sequence from clone RP24-456I14 on chromosome X, complete
             sequence
          Length = 52670

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 424   tattcacttgcctgcacaat 443
             ||||||||||||||||||||
Sbjct: 31575 tattcacttgcctgcacaat 31594
to top
>gb|AC022410.5| Homo sapiens chromosome 5 clone CTB-17K15, complete sequence
          Length = 68234

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   agttataatgatacttctga 207
             ||||||||||||||||||||
Sbjct: 35063 agttataatgatacttctga 35082
to top
>gb|AC140677.1| Homo sapiens chromosome 5 clone CTC-778L3, complete sequence
          Length = 121010

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   agttataatgatacttctga 207
             ||||||||||||||||||||
Sbjct: 56472 agttataatgatacttctga 56453
to top
>gb|AC083897.4| Homo sapiens BAC clone CTD-2174D21 from 2, complete sequence
          Length = 25316

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 370   ttttcctgatgagctgctatattt 393
             ||||||||| ||||||||||||||
Sbjct: 15516 ttttcctgaagagctgctatattt 15493
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 573     gtgaagagacagaagatgac 592
               ||||||||||||||||||||
Sbjct: 2196640 gtgaagagacagaagatgac 2196621
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>emb|BX119975.7| Zebrafish DNA sequence from clone CH211-200A16 in linkage group 8,
              complete sequence
          Length = 154904

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 224    cctggtaaaaactggcagct 243
              ||||||||||||||||||||
Sbjct: 130888 cctggtaaaaactggcagct 130869
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>gb|AC116475.7| Mus musculus chromosome 8, clone RP23-386N2, complete sequence
          Length = 184741

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    aacaatatgtgctcgttttg 66
             ||||||||||||||||||||
Sbjct: 84163 aacaatatgtgctcgttttg 84182
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>gb|AC139294.4| Mus musculus BAC clone RP24-239E14 from 14, complete sequence
          Length = 183363

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 573   gtgaagagacagaagatgac 592
             ||||||||||||||||||||
Sbjct: 36108 gtgaagagacagaagatgac 36089
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>gb|AC111202.5| Mus musculus BAC clone RP23-338I3 from 9, complete sequence
          Length = 200266

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 406   gcacaatatttgcaaacttattca 429
             |||| |||||||||||||||||||
Sbjct: 57363 gcaccatatttgcaaacttattca 57340


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,230,843
Number of Sequences: 3902068
Number of extensions: 5230843
Number of successful extensions: 105812
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105574
Number of HSP's gapped (non-prelim): 238
length of query: 607
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 584
effective length of database: 17,143,297,704
effective search space: 10011685859136
effective search space used: 10011685859136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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