ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags10g14 |
|---|---|
| Clone Library Name | barley_pub |
>DME_ARATH (Q8LK56) Transcriptional activator DEMETER (DNA glycosylase-related| protein DME) Length = 1729 Score = 177 bits (448), Expect = 3e-44 Identities = 99/217 (45%), Positives = 124/217 (57%), Gaps = 4/217 (1%) Frame = +2 Query: 2 DTNVGRICVRLGWVXXXXXXXXXXXXXXXXXXMLENIQKYLWPRLCKLDQRTLYELHYQM 181 DTNVGRI VR+GWV +LE+IQK+LWPRLCKLDQRTLYELHYQ+ Sbjct: 1304 DTNVGRIAVRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQL 1363 Query: 182 ITFGKVFCTKSKPNCNACPMRAECKHXXXXXXXXXXXXPGPEEKSLVTSGNPIASGSCQQ 361 ITFGKVFCTKS+PNCNACPMR EC+H P PEE+SL ++ P+ S Sbjct: 1364 ITFGKVFCTKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESF-P 1422 Query: 362 PYISPMRLNQLDWN---AHAHDHILDNCQXXXXXXXXXXXXXXXXXMRESAIEDIFL-DD 529 P PM L A +NC+ + ES IED + +D Sbjct: 1423 PVAIPMIELPLPLEKSLASGAPSNRENCE--PIIEEPASPGQECTEITESDIEDAYYNED 1480 Query: 530 PEEIPTIKLNFEEFAQNLKNYMQVNNIEMEDADMSSA 640 P+EIPTIKLN E+F L+ +M+ N+E+++ DMS A Sbjct: 1481 PDEIPTIKLNIEQFGMTLREHME-RNMELQEGDMSKA 1516
>ROS1_ARATH (Q9SJQ6) ROS1 protein (Repressor of silencing 1) (DEMETER-like| protein 1) Length = 1393 Score = 169 bits (428), Expect = 6e-42 Identities = 94/213 (44%), Positives = 117/213 (54%) Frame = +2 Query: 2 DTNVGRICVRLGWVXXXXXXXXXXXXXXXXXXMLENIQKYLWPRLCKLDQRTLYELHYQM 181 DTNVGRI VRLGWV MLE+IQKYLWPRLCKLDQ+TLYELHYQM Sbjct: 971 DTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPMLESIQKYLWPRLCKLDQKTLYELHYQM 1030 Query: 182 ITFGKVFCTKSKPNCNACPMRAECKHXXXXXXXXXXXXPGPEEKSLVTSGNPIASGSCQQ 361 ITFGKVFCTKSKPNCNACPM+ EC+H P E+ NP+ + Sbjct: 1031 ITFGKVFCTKSKPNCNACPMKGECRHFASAFASARLALPSTEKGMGTPDKNPLPL-HLPE 1089 Query: 362 PYISPMRLNQLDWNAHAHDHILDNCQXXXXXXXXXXXXXXXXXMRESAIEDIFLDDPEEI 541 P+ + + A + C+ + + IE+ F +DPEEI Sbjct: 1090 PFQREQGSEVVQHSEPAKK--VTCCEPIIEEPASPEPETAEVSIAD--IEEAFFEDPEEI 1145 Query: 542 PTIKLNFEEFAQNLKNYMQVNNIEMEDADMSSA 640 PTI+LN + F NLK M+ +N E++D +MSSA Sbjct: 1146 PTIRLNMDAFTSNLKKIME-HNKELQDGNMSSA 1177
>DML3_ARATH (O49498) DEMETER-like protein 3| Length = 1044 Score = 122 bits (307), Expect = 7e-28 Identities = 59/104 (56%), Positives = 66/104 (63%) Frame = +2 Query: 2 DTNVGRICVRLGWVXXXXXXXXXXXXXXXXXXMLENIQKYLWPRLCKLDQRTLYELHYQM 181 DTNVGRI VRLG V +++IQKYLWPRLCKL Q TLYELHYQM Sbjct: 611 DTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSMDSIQKYLWPRLCKLPQETLYELHYQM 670 Query: 182 ITFGKVFCTKSKPNCNACPMRAECKHXXXXXXXXXXXXPGPEEK 313 ITFGKVFCTK+ PNCNACPM++ECK+ PEEK Sbjct: 671 ITFGKVFCTKTIPNCNACPMKSECKYFASAYVSSKVLLESPEEK 714
>DML2_ARATH (Q9SR66) DEMETER-like protein 2| Length = 1309 Score = 92.0 bits (227), Expect = 1e-18 Identities = 49/103 (47%), Positives = 55/103 (53%) Frame = +2 Query: 2 DTNVGRICVRLGWVXXXXXXXXXXXXXXXXXXMLENIQKYLWPRLCKLDQRTLYELHYQM 181 DTNVGRI VRLGWV + + +Q +L LYELHY M Sbjct: 903 DTNVGRIAVRLGWV--------------PLQPLPDELQMHL---------LELYELHYHM 939 Query: 182 ITFGKVFCTKSKPNCNACPMRAECKHXXXXXXXXXXXXPGPEE 310 ITFGKVFCTK KPNCNACPM+AEC+H P PEE Sbjct: 940 ITFGKVFCTKVKPNCNACPMKAECRHYSSARASARLALPEPEE 982
>END3_RICPR (O05956) Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or| apyrimidinic site) lyase) Length = 212 Score = 38.5 bits (88), Expect = 0.017 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = +2 Query: 143 LDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRAECKH 259 +D++ L H+ +I G+ C KP CN CP++ C++ Sbjct: 167 IDEKWLTYAHHWLILHGRYICKARKPGCNICPIKEYCEY 205
>MUTY_BUCBP (Q89A45) A/G-specific adenine glycosylase (EC 3.2.2.-)| Length = 351 Score = 37.7 bits (86), Expect = 0.029 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Frame = +2 Query: 110 IQKYLWPRLCKLDQRTLY---ELHYQMITFGKVFCTKSKPNCNACPMRAECK 256 I+K LW + + +Y + + +I G + C KS P CN CP+++ CK Sbjct: 158 IEKLLWKTIESITP--IYHTNKFNQALIDIGALICLKSNPKCNICPLKSTCK 207
>END3_RICCN (Q92GH4) Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or| apyrimidinic site) lyase) Length = 210 Score = 35.8 bits (81), Expect = 0.11 Identities = 12/39 (30%), Positives = 22/39 (56%) Frame = +2 Query: 143 LDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRAECKH 259 +D + L H+ +I G+ C KP+C+ CP++ C + Sbjct: 167 IDTKWLTHAHHWLILHGRYICKARKPDCDICPIKEYCDY 205
>MUTY_ECOLI (P17802) A/G-specific adenine glycosylase (EC 3.2.2.-)| Length = 350 Score = 33.9 bits (76), Expect = 0.42 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +2 Query: 179 MITFGKVFCTKSKPNCNACPMRAEC 253 M+ G + CT+SKP C+ CP++ C Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC 208
>MUTY_SALTY (Q05869) A/G-specific adenine glycosylase (EC 3.2.2.-)| Length = 350 Score = 33.5 bits (75), Expect = 0.55 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +2 Query: 152 RTLYELHYQMITFGKVFCTKSKPNCNACPMRAEC 253 R + + M+ G + CT+SKP C CP++ C Sbjct: 175 RGVERFNQAMMDLGAMVCTRSKPKCTLCPLQNGC 208
>END3_RICTY (Q68W04) Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or| apyrimidinic site) lyase) Length = 212 Score = 33.5 bits (75), Expect = 0.55 Identities = 10/39 (25%), Positives = 22/39 (56%) Frame = +2 Query: 143 LDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRAECKH 259 +D++ L H+ ++ G+ C KP+C C ++ C++ Sbjct: 167 IDEKWLTHAHHWLVLHGRYICKARKPSCRICHIKEYCEY 205
>NTH1_CAEEL (P54137) Probable endonuclease III homolog (EC 4.2.99.18)| (DNA-(Apurinic or apyrimidinic site) lyase) Length = 259 Score = 33.1 bits (74), Expect = 0.71 Identities = 24/84 (28%), Positives = 34/84 (40%) Frame = +2 Query: 2 DTNVGRICVRLGWVXXXXXXXXXXXXXXXXXXMLENIQKYLWPRLCKLDQRTLYELHYQM 181 DT+V RI RLGW+ E QK L L K + + + L + Sbjct: 138 DTHVHRISNRLGWIKTSTP---------------EKTQKALEILLPKSEWQPINHL---L 179 Query: 182 ITFGKVFCTKSKPNCNACPMRAEC 253 + FG++ C +P C C R C Sbjct: 180 VGFGQMQCQPVRPKCGTCLCRFTC 203
>MUTY_HAEIN (P44320) A/G-specific adenine glycosylase (EC 3.2.2.-)| Length = 378 Score = 32.7 bits (73), Expect = 0.93 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +2 Query: 104 ENIQKYLWPRLCKLDQRT-LYELHYQMITFGKVFCTKSKPNCNACPMRAEC 253 + ++ LW ++ T + + + M+ G + C ++KP C+ CP+ +C Sbjct: 163 KKVENRLWALTEQVTPTTRVADFNQAMMDIGAMVCMRTKPKCDLCPLNIDC 213
>END3_BACSU (P39788) Probable endonuclease III (EC 4.2.99.18) (DNA-(apurinic or| apyrimidinic site) lyase) Length = 219 Score = 32.3 bits (72), Expect = 1.2 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = +2 Query: 170 HYQMITFGKVFCTKSKPNCNACPMRAECK 256 H+++I FG+ C P C CP+ + C+ Sbjct: 178 HHRLIFFGRYHCKAQSPRCAECPLLSLCR 206
>CYTD_HUMAN (P28325) Cystatin D precursor| Length = 142 Score = 32.0 bits (71), Expect = 1.6 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +2 Query: 170 HYQMITFGKVFCTKSKPNCNACPMRAECK 256 +Y + FG+ CTKS+PN + CP + K Sbjct: 84 YYFNVKFGRTTCTKSQPNLDNCPFNDQPK 112
>AFLR_ASPPA (P43651) Aflatoxin biosynthesis regulatory protein| Length = 444 Score = 31.2 bits (69), Expect = 2.7 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 6/80 (7%) Frame = +2 Query: 194 KVFCTKSKPNCNACPMRA-ECKHXXXXXXXXXXXXPGPEEKSLVTSGNPIASGSCQ---- 358 KV CTK KP C C R C++ P P + + S + ++GS Q Sbjct: 36 KVRCTKEKPACARCIERGLACQYMVSKRMGRNPRAPSPLDSTRRPSESLPSAGSEQGLPA 95 Query: 359 -QPYISPMRLNQLDWNAHAH 415 Y +P Q +AH+H Sbjct: 96 HNTYSTPHAHTQAHTHAHSH 115
>MUTY_BUCAI (P57617) A/G-specific adenine glycosylase (EC 3.2.2.-)| Length = 350 Score = 30.8 bits (68), Expect = 3.5 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Frame = +2 Query: 104 ENIQKYLWPRLCKLDQ-RTLYELHYQMITFGKVFCTKSKPNCNACPMRAEC 253 + I+K LW + + + + M+ G C KP C CP++ EC Sbjct: 158 KKIEKKLWNIIESITPIHNTGKFNQGMMDIGASICISIKPKCTICPLKKEC 208
>FAD3E_BRANA (P48624) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 383 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 10/38 (26%) Frame = +3 Query: 30 GWDGSHFNPYPSLF----------SCICWSCIRCWRTY 113 G +GSHFNPY SLF S CWS + Y Sbjct: 189 GKEGSHFNPYSSLFAPSERKLIATSTTCWSIMLATLVY 226
>POLN_MAYAB (Q8QZ73) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2436 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Frame = +2 Query: 311 KSLVTSGNPIASG---SCQQPYISPMRLNQLDWNAHAHDHILDN 433 KSLVT G+ +ASG +CQ+ + R LD A D +L N Sbjct: 733 KSLVTRGDLVASGKKENCQEIMLDVKRYRDLDMTAKTVDSVLLN 776
>FAD3E_ARATH (P48623) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 386 Score = 30.4 bits (67), Expect = 4.6 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 10/30 (33%) Frame = +3 Query: 30 GWDGSHFNPYPSLF----------SCICWS 89 G +GSHFNPY SLF S CWS Sbjct: 192 GKEGSHFNPYSSLFAPSERKLIATSTTCWS 221
>MUTYH_RAT (Q8R5G2) A/G-specific adenine DNA glycosylase (EC 3.2.2.-) (MutY| homolog) (rMYH) Length = 516 Score = 30.0 bits (66), Expect = 6.0 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Frame = +2 Query: 110 IQKYLWPRLCKL-DQRTLYELHYQMITFGKVFCTKSKPNCNACPMRAECKHXXXXXXXXX 286 + +LW +L D + + + G CT +P CN CP+++ C+ Sbjct: 229 VSHHLWDLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCNHCPVQSLCRAHQRVGQGRL 288 Query: 287 XXXPG 301 PG Sbjct: 289 SALPG 293
>NTHL1_HUMAN (P78549) Endonuclease III-like protein 1 (EC 4.2.99.18)| Length = 312 Score = 29.6 bits (65), Expect = 7.9 Identities = 21/84 (25%), Positives = 33/84 (39%) Frame = +2 Query: 2 DTNVGRICVRLGWVXXXXXXXXXXXXXXXXXXMLENIQKYLWPRLCKLDQRTLYELHYQM 181 DT+V RI RL W + E + + LW +E++ + Sbjct: 239 DTHVHRIANRLRWTKKATKSPEETRAA-----LEEWLPRELW-----------HEINGLL 282 Query: 182 ITFGKVFCTKSKPNCNACPMRAEC 253 + FG+ C P C+AC +A C Sbjct: 283 VGFGQQTCLPVHPRCHACLNQALC 306
>MUTY_BUCAP (Q8K926) A/G-specific adenine glycosylase (EC 3.2.2.-)| Length = 347 Score = 29.6 bits (65), Expect = 7.9 Identities = 9/25 (36%), Positives = 14/25 (56%) Frame = +2 Query: 179 MITFGKVFCTKSKPNCNACPMRAEC 253 ++ G + CT P CN CP+ +C Sbjct: 184 IMDIGALICTPKNPKCNLCPLIQKC 208
>FAD3E_PHAAU (P32291) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) (Indole-3-acetic acid-induced protein ARG1) Length = 380 Score = 29.6 bits (65), Expect = 7.9 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 10/32 (31%) Frame = +3 Query: 30 GWDGSHFNPYPSLF----------SCICWSCI 95 G +GSHFNPY +LF S +CW + Sbjct: 188 GKEGSHFNPYSNLFSPGERKGVVTSTLCWGIV 219
>PURA_PROAC (Q6A6A3) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 428 Score = 29.6 bits (65), Expect = 7.9 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +2 Query: 320 VTSGNPIASGSCQQPYISPMRLNQLDWNAHAH 415 VTS NPIA+G+C + P R++++ A A+ Sbjct: 237 VTSSNPIAAGACTGSGVGPTRIDRIVGIAKAY 268
>MYH1_SCHPO (Q10159) A/G-specific adenine DNA glycosylase (EC 3.2.2.-)| Length = 461 Score = 29.6 bits (65), Expect = 7.9 Identities = 9/31 (29%), Positives = 16/31 (51%) Frame = +2 Query: 164 ELHYQMITFGKVFCTKSKPNCNACPMRAECK 256 + + ++ G + CT P C+ CP+ CK Sbjct: 213 DFNQALMELGAITCTPQSPRCSVCPISEICK 243 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,833,441 Number of Sequences: 219361 Number of extensions: 1570132 Number of successful extensions: 4004 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3856 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4000 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
