No.
Definition
Score (bits)
E Value
1 dbj|AK066948.1| Oryza sativa (japonica cultivar-group) cDNA clon...
527
e-146
2 gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome...
125
2e-25
3 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
125
2e-25
4 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
125
2e-25
5 gb|AY110314.1| Zea mays CL24410_-1 mRNA sequence
76
2e-10
6 gb|AC183426.2| Populus trichocarpa clone Pop1-45L17, complete se...
74
7e-10
7 gb|AC017004.4| Homo sapiens BAC clone RP11-88C6 from 2, complete...
50
0.009
8 gb|AC110173.11| Mus musculus chromosome 8, clone RP24-396D19, co...
42
2.3
9 gb|AC160465.3| Mus musculus chromosome 8, clone RP23-267N9, comp...
42
2.3
10 gb|AC068042.5| Homo sapiens BAC clone RP11-535B12 from 2, comple...
42
2.3
11 gb|AC161215.6| Mus musculus chromosome 7, clone RP24-185E6, comp...
40
9.1
12 gb|AC162897.4| Mus musculus chromosome 7, clone RP23-371C4, comp...
40
9.1
13 gb|AC122488.3| Mus musculus BAC clone RP24-383B2 from chromosome...
40
9.1
14 gb|AC165343.3| Mus musculus BAC clone RP23-476C24 from chromosom...
40
9.1
15 emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete ...
40
9.1
16 emb|BX640430.1| Bordetella parapertussis strain 12822, complete ...
40
9.1
17 emb|BX640417.1| Bordetella pertussis strain Tohama I, complete g...
40
9.1
18 gb|U77671.1|BBU77671 Bordetella bronchiseptica putative ferric s...
40
9.1
19 gb|AC069418.15| Homo sapiens 3 BAC RP11-464F3 (Roswell Park Canc...
40
9.1
20 emb|BX571825.6| Zebrafish DNA sequence from clone DKEY-158E13 in...
40
9.1
21 gb|AC116892.10| Mus musculus chromosome 8, clone RP24-529J16, co...
40
9.1
22 emb|CT573229.8| Zebrafish DNA sequence from clone DKEY-11D7 in l...
40
9.1
23 gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
40
9.1
24 emb|AL590992.12| Mouse DNA sequence from clone RP23-212C14 on ch...
40
9.1
>gb|AC134236.4 | Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0056G13,
complete sequence
Length = 148011
Score = 125 bits (63), Expect = 2e-25
Identities = 123/143 (86%)
Strand = Plus / Plus
Query: 511 aggtcagcgattgattgacaatatccatccactgtttgagggtgctgtaattgaaccatg 570
||||||||||||||| || ||||| |||||||| ||||| || ||||| || || |||||
Sbjct: 111535 aggtcagcgattgatcgagaatatgcatccactttttgaaggcgctgttatggagccatg 111594
Query: 571 cctgcttcatggagatttatggagtggaaatataagctccgatactaatggagatcctgt 630
| |||||||||| ||| ||||||||||||| ||||| || ||||||||||| || |||||
Sbjct: 111595 cttgcttcatggggatctatggagtggaaacataagttctgatactaatggtgaacctgt 111654
Query: 631 aatattggatccagcatgctact 653
|||||||| ||||| |||||||
Sbjct: 111655 tatattggacccagcttgctact 111677
Score = 111 bits (56), Expect = 3e-21
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 302 cagtcagctctagggaggaaactcgctgaaatgcataaagctgcaaaatctgataagggc 361
||||||||| | || |||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 111080 cagtcagctttgggaaggaaactagctgaaatgcataaagctgccaaatctgacaagggc 111139
Query: 362 tatggtttctacgttgaaaataccattggaag 393
||||||||||| ||||| ||||| ||||||||
Sbjct: 111140 tatggtttctatgttgacaatacaattggaag 111171
Score = 97.6 bits (49), Expect = 5e-17
Identities = 85/97 (87%)
Strand = Plus / Plus
Query: 136 caggcgcatcggtccagctatgtttgaaggggaggctctgggcttgaaggcaatgtatga 195
|||||| || |||||| |||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 110337 caggcgtattggtccatctatgtttgaaggggaggctcttggtttgaaggccatgtatga 110396
Query: 196 taccaagtcaattcgtgttcctttgccgtacaaggtt 232
|| || ||||| |||||||| ||||| |||||||||
Sbjct: 110397 cacaaattcaatccgtgttccattgccatacaaggtt 110433
Score = 93.7 bits (47), Expect = 7e-16
Identities = 104/123 (84%)
Strand = Plus / Plus
Query: 392 agcactccacaaatcaacacttggactgctgactggattgagttttactcgaagcataga 451
|||||||| ||||| |||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 111281 agcactccgcaaattaacacttggactgccgactggattgagttttattcaaagcataga 111340
Query: 452 ctgggataccagttgaagttgatatcacagcggttcggagattcagctatatatgaaaaa 511
|||| | ||| || |||||||| | || || || |||||||| || |||||||| |||
Sbjct: 111341 ttgggcttccaattagagttgataacccaacgatttggagattcggcaatatatgataaa 111400
Query: 512 ggt 514
|||
Sbjct: 111401 ggt 111403
Score = 73.8 bits (37), Expect = 7e-10
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 228 aggttggttcgttaccaactggcggttcttttatcatcatggagtttattcagtttggtc 287
||||||| || ||||||||||| ||||||||||| ||||||||||||||| | || |||
Sbjct: 110929 aggttgggtcattaccaactggtggttcttttataatcatggagtttattgaattcggtt 110988
Query: 288 gttctaggggtgaccag 304
| ||||| |||||||||
Sbjct: 110989 gctctagaggtgaccag 111005
Score = 60.0 bits (30), Expect = 1e-05
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 62 tccatcgggggtggctgcatcaacgccgcccagcgctacgacaccgatgccggctccttt 121
|||||||| ||||||||||| ||| | || ||| ||||| | ||||||||| | |||||
Sbjct: 110153 tccatcggcggtggctgcattaactctgctcagtgctacaagaccgatgccagttccttc 110212
Query: 122 tttgtgaagaccaa 135
||||||||||||||
Sbjct: 110213 tttgtgaagaccaa 110226
>gb|DP000009.1 | Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 125 bits (63), Expect = 2e-25
Identities = 123/143 (86%)
Strand = Plus / Plus
Query: 511 aggtcagcgattgattgacaatatccatccactgtttgagggtgctgtaattgaaccatg 570
||||||||||||||| || ||||| |||||||| ||||| || ||||| || || |||||
Sbjct: 956338 aggtcagcgattgatcgagaatatgcatccactttttgaaggcgctgttatggagccatg 956397
Query: 571 cctgcttcatggagatttatggagtggaaatataagctccgatactaatggagatcctgt 630
| |||||||||| ||| ||||||||||||| ||||| || ||||||||||| || |||||
Sbjct: 956398 cttgcttcatggggatctatggagtggaaacataagttctgatactaatggtgaacctgt 956457
Query: 631 aatattggatccagcatgctact 653
|||||||| ||||| |||||||
Sbjct: 956458 tatattggacccagcttgctact 956480
Score = 111 bits (56), Expect = 3e-21
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 302 cagtcagctctagggaggaaactcgctgaaatgcataaagctgcaaaatctgataagggc 361
||||||||| | || |||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 955883 cagtcagctttgggaaggaaactagctgaaatgcataaagctgccaaatctgacaagggc 955942
Query: 362 tatggtttctacgttgaaaataccattggaag 393
||||||||||| ||||| ||||| ||||||||
Sbjct: 955943 tatggtttctatgttgacaatacaattggaag 955974
Score = 97.6 bits (49), Expect = 5e-17
Identities = 85/97 (87%)
Strand = Plus / Plus
Query: 136 caggcgcatcggtccagctatgtttgaaggggaggctctgggcttgaaggcaatgtatga 195
|||||| || |||||| |||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 955140 caggcgtattggtccatctatgtttgaaggggaggctcttggtttgaaggccatgtatga 955199
Query: 196 taccaagtcaattcgtgttcctttgccgtacaaggtt 232
|| || ||||| |||||||| ||||| |||||||||
Sbjct: 955200 cacaaattcaatccgtgttccattgccatacaaggtt 955236
Score = 93.7 bits (47), Expect = 7e-16
Identities = 104/123 (84%)
Strand = Plus / Plus
Query: 392 agcactccacaaatcaacacttggactgctgactggattgagttttactcgaagcataga 451
|||||||| ||||| |||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 956084 agcactccgcaaattaacacttggactgccgactggattgagttttattcaaagcataga 956143
Query: 452 ctgggataccagttgaagttgatatcacagcggttcggagattcagctatatatgaaaaa 511
|||| | ||| || |||||||| | || || || |||||||| || |||||||| |||
Sbjct: 956144 ttgggcttccaattagagttgataacccaacgatttggagattcggcaatatatgataaa 956203
Query: 512 ggt 514
|||
Sbjct: 956204 ggt 956206
Score = 73.8 bits (37), Expect = 7e-10
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 228 aggttggttcgttaccaactggcggttcttttatcatcatggagtttattcagtttggtc 287
||||||| || ||||||||||| ||||||||||| ||||||||||||||| | || |||
Sbjct: 955732 aggttgggtcattaccaactggtggttcttttataatcatggagtttattgaattcggtt 955791
Query: 288 gttctaggggtgaccag 304
| ||||| |||||||||
Sbjct: 955792 gctctagaggtgaccag 955808
Score = 60.0 bits (30), Expect = 1e-05
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 62 tccatcgggggtggctgcatcaacgccgcccagcgctacgacaccgatgccggctccttt 121
|||||||| ||||||||||| ||| | || ||| ||||| | ||||||||| | |||||
Sbjct: 954956 tccatcggcggtggctgcattaactctgctcagtgctacaagaccgatgccagttccttc 955015
Query: 122 tttgtgaagaccaa 135
||||||||||||||
Sbjct: 955016 tttgtgaagaccaa 955029
>dbj|AP008209.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
complete sequence
Length = 36192742
Score = 125 bits (63), Expect = 2e-25
Identities = 123/143 (86%)
Strand = Plus / Plus
Query: 511 aggtcagcgattgattgacaatatccatccactgtttgagggtgctgtaattgaaccatg 570
||||||||||||||| || ||||| |||||||| ||||| || ||||| || || |||||
Sbjct: 956336 aggtcagcgattgatcgagaatatgcatccactttttgaaggcgctgttatggagccatg 956395
Query: 571 cctgcttcatggagatttatggagtggaaatataagctccgatactaatggagatcctgt 630
| |||||||||| ||| ||||||||||||| ||||| || ||||||||||| || |||||
Sbjct: 956396 cttgcttcatggggatctatggagtggaaacataagttctgatactaatggtgaacctgt 956455
Query: 631 aatattggatccagcatgctact 653
|||||||| ||||| |||||||
Sbjct: 956456 tatattggacccagcttgctact 956478
Score = 111 bits (56), Expect = 3e-21
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 302 cagtcagctctagggaggaaactcgctgaaatgcataaagctgcaaaatctgataagggc 361
||||||||| | || |||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 955881 cagtcagctttgggaaggaaactagctgaaatgcataaagctgccaaatctgacaagggc 955940
Query: 362 tatggtttctacgttgaaaataccattggaag 393
||||||||||| ||||| ||||| ||||||||
Sbjct: 955941 tatggtttctatgttgacaatacaattggaag 955972
Score = 97.6 bits (49), Expect = 5e-17
Identities = 85/97 (87%)
Strand = Plus / Plus
Query: 136 caggcgcatcggtccagctatgtttgaaggggaggctctgggcttgaaggcaatgtatga 195
|||||| || |||||| |||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 955138 caggcgtattggtccatctatgtttgaaggggaggctcttggtttgaaggccatgtatga 955197
Query: 196 taccaagtcaattcgtgttcctttgccgtacaaggtt 232
|| || ||||| |||||||| ||||| |||||||||
Sbjct: 955198 cacaaattcaatccgtgttccattgccatacaaggtt 955234
Score = 93.7 bits (47), Expect = 7e-16
Identities = 104/123 (84%)
Strand = Plus / Plus
Query: 392 agcactccacaaatcaacacttggactgctgactggattgagttttactcgaagcataga 451
|||||||| ||||| |||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 956082 agcactccgcaaattaacacttggactgccgactggattgagttttattcaaagcataga 956141
Query: 452 ctgggataccagttgaagttgatatcacagcggttcggagattcagctatatatgaaaaa 511
|||| | ||| || |||||||| | || || || |||||||| || |||||||| |||
Sbjct: 956142 ttgggcttccaattagagttgataacccaacgatttggagattcggcaatatatgataaa 956201
Query: 512 ggt 514
|||
Sbjct: 956202 ggt 956204
Score = 73.8 bits (37), Expect = 7e-10
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 228 aggttggttcgttaccaactggcggttcttttatcatcatggagtttattcagtttggtc 287
||||||| || ||||||||||| ||||||||||| ||||||||||||||| | || |||
Sbjct: 955730 aggttgggtcattaccaactggtggttcttttataatcatggagtttattgaattcggtt 955789
Query: 288 gttctaggggtgaccag 304
| ||||| |||||||||
Sbjct: 955790 gctctagaggtgaccag 955806
Score = 60.0 bits (30), Expect = 1e-05
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 62 tccatcgggggtggctgcatcaacgccgcccagcgctacgacaccgatgccggctccttt 121
|||||||| ||||||||||| ||| | || ||| ||||| | ||||||||| | |||||
Sbjct: 954954 tccatcggcggtggctgcattaactctgctcagtgctacaagaccgatgccagttccttc 955013
Query: 122 tttgtgaagaccaa 135
||||||||||||||
Sbjct: 955014 tttgtgaagaccaa 955027
>emb|AL590992.12 | Mouse DNA sequence from clone RP23-212C14 on chromosome 11, complete
sequence
Length = 118444
Score = 40.1 bits (20), Expect = 9.1
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 618 atggagatcctgtaatattggatc 641
|||||||||||||||| |||||||
Sbjct: 50326 atggagatcctgtaattttggatc 50349
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,174,245
Number of Sequences: 3902068
Number of extensions: 5174245
Number of successful extensions: 91042
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90892
Number of HSP's gapped (non-prelim): 150
length of query: 667
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 644
effective length of database: 17,143,297,704
effective search space: 11040283721376
effective search space used: 11040283721376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)