ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags10g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK066948.1| Oryza sativa (japonica cultivar-group) cDNA clon... 527 e-146
2gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome... 125 2e-25
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 125 2e-25
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
5gb|AY110314.1| Zea mays CL24410_-1 mRNA sequence 76 2e-10
6gb|AC183426.2| Populus trichocarpa clone Pop1-45L17, complete se... 74 7e-10
7gb|AC017004.4| Homo sapiens BAC clone RP11-88C6 from 2, complete... 50 0.009
8gb|AC110173.11| Mus musculus chromosome 8, clone RP24-396D19, co... 42 2.3
9gb|AC160465.3| Mus musculus chromosome 8, clone RP23-267N9, comp... 42 2.3
10gb|AC068042.5| Homo sapiens BAC clone RP11-535B12 from 2, comple... 42 2.3
11gb|AC161215.6| Mus musculus chromosome 7, clone RP24-185E6, comp... 40 9.1
12gb|AC162897.4| Mus musculus chromosome 7, clone RP23-371C4, comp... 40 9.1
13gb|AC122488.3| Mus musculus BAC clone RP24-383B2 from chromosome... 40 9.1
14gb|AC165343.3| Mus musculus BAC clone RP23-476C24 from chromosom... 40 9.1
15emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete ... 40 9.1
16emb|BX640430.1| Bordetella parapertussis strain 12822, complete ... 40 9.1
17emb|BX640417.1| Bordetella pertussis strain Tohama I, complete g... 40 9.1
18gb|U77671.1|BBU77671 Bordetella bronchiseptica putative ferric s... 40 9.1
19gb|AC069418.15| Homo sapiens 3 BAC RP11-464F3 (Roswell Park Canc... 40 9.1
20emb|BX571825.6| Zebrafish DNA sequence from clone DKEY-158E13 in... 40 9.1
21gb|AC116892.10| Mus musculus chromosome 8, clone RP24-529J16, co... 40 9.1
22emb|CT573229.8| Zebrafish DNA sequence from clone DKEY-11D7 in l... 40 9.1
23gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 9.1
24emb|AL590992.12| Mouse DNA sequence from clone RP23-212C14 on ch... 40 9.1

>dbj|AK066948.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089A07, full
           insert sequence
          Length = 1335

 Score =  527 bits (266), Expect = e-146
 Identities = 518/602 (86%)
 Strand = Plus / Plus

                                                                       
Query: 62  tccatcgggggtggctgcatcaacgccgcccagcgctacgacaccgatgccggctccttt 121
           |||||||| ||||||||||| ||| | || ||| ||||| | ||||||||| | ||||| 
Sbjct: 283 tccatcggcggtggctgcattaactctgctcagtgctacaagaccgatgccagttccttc 342

                                                                       
Query: 122 tttgtgaagaccaacaggcgcatcggtccagctatgtttgaaggggaggctctgggcttg 181
           ||||||||||||||  |||| || |||||| |||||||||||||||||||||| || |||
Sbjct: 343 tttgtgaagaccaatgggcgtattggtccatctatgtttgaaggggaggctcttggtttg 402

                                                                       
Query: 182 aaggcaatgtatgataccaagtcaattcgtgttcctttgccgtacaaggttggttcgtta 241
           ||||| |||||||| || || ||||| |||||||| ||||| ||||||||||| || |||
Sbjct: 403 aaggccatgtatgacacaaattcaatccgtgttccattgccatacaaggttgggtcatta 462

                                                                       
Query: 242 ccaactggcggttcttttatcatcatggagtttattcagtttggtcgttctaggggtgac 301
           |||||||| ||||||||||| ||||||||||||||| | || ||| | ||||| ||||||
Sbjct: 463 ccaactggtggttcttttataatcatggagtttattgaattcggttgctctagaggtgac 522

                                                                       
Query: 302 cagtcagctctagggaggaaactcgctgaaatgcataaagctgcaaaatctgataagggc 361
           ||||||||| | || |||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 523 cagtcagctttgggaaggaaactagctgaaatgcataaagctgccaaatctgacaagggc 582

                                                                       
Query: 362 tatggtttctacgttgaaaataccattggaagcactccacaaatcaacacttggactgct 421
           ||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||| 
Sbjct: 583 tatggtttctatgttgacaatacaattggaagcactccgcaaattaacacttggactgcc 642

                                                                       
Query: 422 gactggattgagttttactcgaagcatagactgggataccagttgaagttgatatcacag 481
           ||||||||||||||||| || ||||||||| |||| | ||| ||  |||||||| | || 
Sbjct: 643 gactggattgagttttattcaaagcatagattgggcttccaattagagttgataacccaa 702

                                                                       
Query: 482 cggttcggagattcagctatatatgaaaaaggtcagcgattgattgacaatatccatcca 541
           || || |||||||| || |||||||| ||||||||||||||||| || ||||| ||||||
Sbjct: 703 cgatttggagattcggcaatatatgataaaggtcagcgattgatcgagaatatgcatcca 762

                                                                       
Query: 542 ctgtttgagggtgctgtaattgaaccatgcctgcttcatggagatttatggagtggaaat 601
           || ||||| || ||||| || || |||||| |||||||||| ||| ||||||||||||| 
Sbjct: 763 ctttttgaaggcgctgttatggagccatgcttgcttcatggggatctatggagtggaaac 822

                                                                       
Query: 602 ataagctccgatactaatggagatcctgtaatattggatccagcatgctactatggacac 661
           ||||| || ||||||||||| || ||||| |||||||| ||||| ||||||||||| |||
Sbjct: 823 ataagttctgatactaatggtgaacctgttatattggacccagcttgctactatggccac 882

             
Query: 662 aa 663
           ||
Sbjct: 883 aa 884



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>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0056G13,
              complete sequence
          Length = 148011

 Score =  125 bits (63), Expect = 2e-25
 Identities = 123/143 (86%)
 Strand = Plus / Plus

                                                                          
Query: 511    aggtcagcgattgattgacaatatccatccactgtttgagggtgctgtaattgaaccatg 570
              ||||||||||||||| || ||||| |||||||| ||||| || ||||| || || |||||
Sbjct: 111535 aggtcagcgattgatcgagaatatgcatccactttttgaaggcgctgttatggagccatg 111594

                                                                          
Query: 571    cctgcttcatggagatttatggagtggaaatataagctccgatactaatggagatcctgt 630
              | |||||||||| ||| ||||||||||||| ||||| || ||||||||||| || |||||
Sbjct: 111595 cttgcttcatggggatctatggagtggaaacataagttctgatactaatggtgaacctgt 111654

                                     
Query: 631    aatattggatccagcatgctact 653
               |||||||| ||||| |||||||
Sbjct: 111655 tatattggacccagcttgctact 111677



 Score =  111 bits (56), Expect = 3e-21
 Identities = 83/92 (90%)
 Strand = Plus / Plus

                                                                          
Query: 302    cagtcagctctagggaggaaactcgctgaaatgcataaagctgcaaaatctgataagggc 361
              ||||||||| | || |||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 111080 cagtcagctttgggaaggaaactagctgaaatgcataaagctgccaaatctgacaagggc 111139

                                              
Query: 362    tatggtttctacgttgaaaataccattggaag 393
              ||||||||||| ||||| ||||| ||||||||
Sbjct: 111140 tatggtttctatgttgacaatacaattggaag 111171



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 85/97 (87%)
 Strand = Plus / Plus

                                                                          
Query: 136    caggcgcatcggtccagctatgtttgaaggggaggctctgggcttgaaggcaatgtatga 195
              |||||| || |||||| |||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 110337 caggcgtattggtccatctatgtttgaaggggaggctcttggtttgaaggccatgtatga 110396

                                                   
Query: 196    taccaagtcaattcgtgttcctttgccgtacaaggtt 232
               || || ||||| |||||||| ||||| |||||||||
Sbjct: 110397 cacaaattcaatccgtgttccattgccatacaaggtt 110433



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 104/123 (84%)
 Strand = Plus / Plus

                                                                          
Query: 392    agcactccacaaatcaacacttggactgctgactggattgagttttactcgaagcataga 451
              |||||||| ||||| |||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 111281 agcactccgcaaattaacacttggactgccgactggattgagttttattcaaagcataga 111340

                                                                          
Query: 452    ctgggataccagttgaagttgatatcacagcggttcggagattcagctatatatgaaaaa 511
               |||| | ||| ||  |||||||| | || || || |||||||| || |||||||| |||
Sbjct: 111341 ttgggcttccaattagagttgataacccaacgatttggagattcggcaatatatgataaa 111400

                 
Query: 512    ggt 514
              |||
Sbjct: 111401 ggt 111403



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                          
Query: 228    aggttggttcgttaccaactggcggttcttttatcatcatggagtttattcagtttggtc 287
              ||||||| || ||||||||||| ||||||||||| ||||||||||||||| | || ||| 
Sbjct: 110929 aggttgggtcattaccaactggtggttcttttataatcatggagtttattgaattcggtt 110988

                               
Query: 288    gttctaggggtgaccag 304
              | ||||| |||||||||
Sbjct: 110989 gctctagaggtgaccag 111005



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                          
Query: 62     tccatcgggggtggctgcatcaacgccgcccagcgctacgacaccgatgccggctccttt 121
              |||||||| ||||||||||| ||| | || ||| ||||| | ||||||||| | ||||| 
Sbjct: 110153 tccatcggcggtggctgcattaactctgctcagtgctacaagaccgatgccagttccttc 110212

                            
Query: 122    tttgtgaagaccaa 135
              ||||||||||||||
Sbjct: 110213 tttgtgaagaccaa 110226



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  125 bits (63), Expect = 2e-25
 Identities = 123/143 (86%)
 Strand = Plus / Plus

                                                                          
Query: 511    aggtcagcgattgattgacaatatccatccactgtttgagggtgctgtaattgaaccatg 570
              ||||||||||||||| || ||||| |||||||| ||||| || ||||| || || |||||
Sbjct: 956338 aggtcagcgattgatcgagaatatgcatccactttttgaaggcgctgttatggagccatg 956397

                                                                          
Query: 571    cctgcttcatggagatttatggagtggaaatataagctccgatactaatggagatcctgt 630
              | |||||||||| ||| ||||||||||||| ||||| || ||||||||||| || |||||
Sbjct: 956398 cttgcttcatggggatctatggagtggaaacataagttctgatactaatggtgaacctgt 956457

                                     
Query: 631    aatattggatccagcatgctact 653
               |||||||| ||||| |||||||
Sbjct: 956458 tatattggacccagcttgctact 956480



 Score =  111 bits (56), Expect = 3e-21
 Identities = 83/92 (90%)
 Strand = Plus / Plus

                                                                          
Query: 302    cagtcagctctagggaggaaactcgctgaaatgcataaagctgcaaaatctgataagggc 361
              ||||||||| | || |||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 955883 cagtcagctttgggaaggaaactagctgaaatgcataaagctgccaaatctgacaagggc 955942

                                              
Query: 362    tatggtttctacgttgaaaataccattggaag 393
              ||||||||||| ||||| ||||| ||||||||
Sbjct: 955943 tatggtttctatgttgacaatacaattggaag 955974



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 85/97 (87%)
 Strand = Plus / Plus

                                                                          
Query: 136    caggcgcatcggtccagctatgtttgaaggggaggctctgggcttgaaggcaatgtatga 195
              |||||| || |||||| |||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 955140 caggcgtattggtccatctatgtttgaaggggaggctcttggtttgaaggccatgtatga 955199

                                                   
Query: 196    taccaagtcaattcgtgttcctttgccgtacaaggtt 232
               || || ||||| |||||||| ||||| |||||||||
Sbjct: 955200 cacaaattcaatccgtgttccattgccatacaaggtt 955236



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 104/123 (84%)
 Strand = Plus / Plus

                                                                          
Query: 392    agcactccacaaatcaacacttggactgctgactggattgagttttactcgaagcataga 451
              |||||||| ||||| |||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 956084 agcactccgcaaattaacacttggactgccgactggattgagttttattcaaagcataga 956143

                                                                          
Query: 452    ctgggataccagttgaagttgatatcacagcggttcggagattcagctatatatgaaaaa 511
               |||| | ||| ||  |||||||| | || || || |||||||| || |||||||| |||
Sbjct: 956144 ttgggcttccaattagagttgataacccaacgatttggagattcggcaatatatgataaa 956203

                 
Query: 512    ggt 514
              |||
Sbjct: 956204 ggt 956206



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                          
Query: 228    aggttggttcgttaccaactggcggttcttttatcatcatggagtttattcagtttggtc 287
              ||||||| || ||||||||||| ||||||||||| ||||||||||||||| | || ||| 
Sbjct: 955732 aggttgggtcattaccaactggtggttcttttataatcatggagtttattgaattcggtt 955791

                               
Query: 288    gttctaggggtgaccag 304
              | ||||| |||||||||
Sbjct: 955792 gctctagaggtgaccag 955808



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                          
Query: 62     tccatcgggggtggctgcatcaacgccgcccagcgctacgacaccgatgccggctccttt 121
              |||||||| ||||||||||| ||| | || ||| ||||| | ||||||||| | ||||| 
Sbjct: 954956 tccatcggcggtggctgcattaactctgctcagtgctacaagaccgatgccagttccttc 955015

                            
Query: 122    tttgtgaagaccaa 135
              ||||||||||||||
Sbjct: 955016 tttgtgaagaccaa 955029



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score =  125 bits (63), Expect = 2e-25
 Identities = 123/143 (86%)
 Strand = Plus / Plus

                                                                          
Query: 511    aggtcagcgattgattgacaatatccatccactgtttgagggtgctgtaattgaaccatg 570
              ||||||||||||||| || ||||| |||||||| ||||| || ||||| || || |||||
Sbjct: 956336 aggtcagcgattgatcgagaatatgcatccactttttgaaggcgctgttatggagccatg 956395

                                                                          
Query: 571    cctgcttcatggagatttatggagtggaaatataagctccgatactaatggagatcctgt 630
              | |||||||||| ||| ||||||||||||| ||||| || ||||||||||| || |||||
Sbjct: 956396 cttgcttcatggggatctatggagtggaaacataagttctgatactaatggtgaacctgt 956455

                                     
Query: 631    aatattggatccagcatgctact 653
               |||||||| ||||| |||||||
Sbjct: 956456 tatattggacccagcttgctact 956478



 Score =  111 bits (56), Expect = 3e-21
 Identities = 83/92 (90%)
 Strand = Plus / Plus

                                                                          
Query: 302    cagtcagctctagggaggaaactcgctgaaatgcataaagctgcaaaatctgataagggc 361
              ||||||||| | || |||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 955881 cagtcagctttgggaaggaaactagctgaaatgcataaagctgccaaatctgacaagggc 955940

                                              
Query: 362    tatggtttctacgttgaaaataccattggaag 393
              ||||||||||| ||||| ||||| ||||||||
Sbjct: 955941 tatggtttctatgttgacaatacaattggaag 955972



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 85/97 (87%)
 Strand = Plus / Plus

                                                                          
Query: 136    caggcgcatcggtccagctatgtttgaaggggaggctctgggcttgaaggcaatgtatga 195
              |||||| || |||||| |||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 955138 caggcgtattggtccatctatgtttgaaggggaggctcttggtttgaaggccatgtatga 955197

                                                   
Query: 196    taccaagtcaattcgtgttcctttgccgtacaaggtt 232
               || || ||||| |||||||| ||||| |||||||||
Sbjct: 955198 cacaaattcaatccgtgttccattgccatacaaggtt 955234



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 104/123 (84%)
 Strand = Plus / Plus

                                                                          
Query: 392    agcactccacaaatcaacacttggactgctgactggattgagttttactcgaagcataga 451
              |||||||| ||||| |||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 956082 agcactccgcaaattaacacttggactgccgactggattgagttttattcaaagcataga 956141

                                                                          
Query: 452    ctgggataccagttgaagttgatatcacagcggttcggagattcagctatatatgaaaaa 511
               |||| | ||| ||  |||||||| | || || || |||||||| || |||||||| |||
Sbjct: 956142 ttgggcttccaattagagttgataacccaacgatttggagattcggcaatatatgataaa 956201

                 
Query: 512    ggt 514
              |||
Sbjct: 956202 ggt 956204



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                          
Query: 228    aggttggttcgttaccaactggcggttcttttatcatcatggagtttattcagtttggtc 287
              ||||||| || ||||||||||| ||||||||||| ||||||||||||||| | || ||| 
Sbjct: 955730 aggttgggtcattaccaactggtggttcttttataatcatggagtttattgaattcggtt 955789

                               
Query: 288    gttctaggggtgaccag 304
              | ||||| |||||||||
Sbjct: 955790 gctctagaggtgaccag 955806



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                          
Query: 62     tccatcgggggtggctgcatcaacgccgcccagcgctacgacaccgatgccggctccttt 121
              |||||||| ||||||||||| ||| | || ||| ||||| | ||||||||| | ||||| 
Sbjct: 954954 tccatcggcggtggctgcattaactctgctcagtgctacaagaccgatgccagttccttc 955013

                            
Query: 122    tttgtgaagaccaa 135
              ||||||||||||||
Sbjct: 955014 tttgtgaagaccaa 955027



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>gb|AY110314.1| Zea mays CL24410_-1 mRNA sequence
          Length = 616

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                       
Query: 560 attgaaccatgcctgcttcatggagatttatggagtggaaatataagctccgatactaat 619
           ||||| || ||| |||||||||| ||| | ||||| ||||| |||||||| ||||  |||
Sbjct: 487 attgagccgtgcttgcttcatggtgatctgtggagcggaaacataagctctgatagcaat 428

                                             
Query: 620 ggagatcctgtaatattggatccagcatgctact 653
           || |||||||||||||||||||| || |||||||
Sbjct: 427 ggggatcctgtaatattggatcctgcttgctact 394



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 431 gagttttactcgaagcatagactgggataccagttgaagttg 472
           ||||||||||| ||||||||| |||| ||||||||| |||||
Sbjct: 616 gagttttactccaagcatagattgggttaccagttggagttg 575



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>gb|AC183426.2| Populus trichocarpa clone Pop1-45L17, complete sequence
          Length = 50019

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                         
Query: 310   tctagggaggaaactcgctgaaatgcataaagctgcaaaatctgataagggctatggttt 369
             ||||||||| || || |||||||||||||||||||  |||||||| || |||| ||||||
Sbjct: 12646 tctagggagaaagcttgctgaaatgcataaagctgggaaatctgaaaaaggctttggttt 12587

                                  
Query: 370   ctacgttgaaaataccattgg 390
             | | ||||| |||||||||||
Sbjct: 12586 cgatgttgataataccattgg 12566



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 395   actccacaaatcaacacttggactgctgactggattgagttttac 439
             |||||||| || |||||||||||  | |||||||| |||||||||
Sbjct: 12422 actccacagataaacacttggacatcagactggatagagttttac 12378



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>gb|AC017004.4| Homo sapiens BAC clone RP11-88C6 from 2, complete sequence
          Length = 184850

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 257   tttatcatcatggagtttattcagtttgg 285
             |||||||||||||||| ||||||||||||
Sbjct: 31425 tttatcatcatggagtatattcagtttgg 31397



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>gb|AC110173.11| Mus musculus chromosome 8, clone RP24-396D19, complete sequence
          Length = 136535

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 618    atggagatcctgtaatattggatcc 642
              |||||||||||||||| ||||||||
Sbjct: 133294 atggagatcctgtaattttggatcc 133270



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>gb|AC160465.3| Mus musculus chromosome 8, clone RP23-267N9, complete sequence
          Length = 224985

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 618    atggagatcctgtaatattggatcc 642
              |||||||||||||||| ||||||||
Sbjct: 210540 atggagatcctgtaattttggatcc 210564



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>gb|AC068042.5| Homo sapiens BAC clone RP11-535B12 from 2, complete sequence
          Length = 172617

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 344   gcaaaatctgataagggctat 364
             |||||||||||||||||||||
Sbjct: 72816 gcaaaatctgataagggctat 72796



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>gb|AC161215.6| Mus musculus chromosome 7, clone RP24-185E6, complete sequence
          Length = 165330

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 618   atggagatcctgtaatattggatc 641
             |||||||||||||||| |||||||
Sbjct: 12797 atggagatcctgtaattttggatc 12820



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>gb|AC162897.4| Mus musculus chromosome 7, clone RP23-371C4, complete sequence
          Length = 187677

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 618   atggagatcctgtaatattggatc 641
             |||||||||||||||| |||||||
Sbjct: 53576 atggagatcctgtaattttggatc 53599



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>gb|AC122488.3| Mus musculus BAC clone RP24-383B2 from chromosome 17, complete
            sequence
          Length = 206003

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 618  atggagatcctgtaatattggatc 641
            |||||||||||||||| |||||||
Sbjct: 7317 atggagatcctgtaattttggatc 7294



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>gb|AC165343.3| Mus musculus BAC clone RP23-476C24 from chromosome 17, complete sequence
          Length = 190724

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 618    atggagatcctgtaatattggatc 641
              |||||||||||||||| |||||||
Sbjct: 103565 atggagatcctgtaattttggatc 103542



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>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     gcatcaacgccgcccagcgc 97
              ||||||||||||||||||||
Sbjct: 213372 gcatcaacgccgcccagcgc 213391



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>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     gcatcaacgccgcccagcgc 97
              ||||||||||||||||||||
Sbjct: 125398 gcatcaacgccgcccagcgc 125417



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>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12
          Length = 348934

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    gcatcaacgccgcccagcgc 97
             ||||||||||||||||||||
Sbjct: 46710 gcatcaacgccgcccagcgc 46729



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>gb|U77671.1|BBU77671 Bordetella bronchiseptica putative ferric siderophore receptor
           (bfrB) gene, complete cds
          Length = 2670

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  gcatcaacgccgcccagcgc 97
           ||||||||||||||||||||
Sbjct: 902 gcatcaacgccgcccagcgc 921



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>gb|AC069418.15| Homo sapiens 3 BAC RP11-464F3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 147000

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 495    cagctatatatgaaaaaggt 514
              ||||||||||||||||||||
Sbjct: 100355 cagctatatatgaaaaaggt 100336



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>emb|BX571825.6| Zebrafish DNA sequence from clone DKEY-158E13 in linkage group 18,
              complete sequence
          Length = 200814

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 328    tgaaatgcataaagctgcaaaatc 351
              ||||||| ||||||||||||||||
Sbjct: 157952 tgaaatgaataaagctgcaaaatc 157975



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>gb|AC116892.10| Mus musculus chromosome 8, clone RP24-529J16, complete sequence
          Length = 176340

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   ggctctgggcttgaaggcaa 188
             ||||||||||||||||||||
Sbjct: 97681 ggctctgggcttgaaggcaa 97700



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>emb|CT573229.8| Zebrafish DNA sequence from clone DKEY-11D7 in linkage group 1,
             complete sequence
          Length = 146843

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   agtcagctctagggaggaaa 322
             ||||||||||||||||||||
Sbjct: 63179 agtcagctctagggaggaaa 63160



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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     acgccgcccagcgctacgac 103
              ||||||||||||||||||||
Sbjct: 673683 acgccgcccagcgctacgac 673702



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>emb|AL590992.12| Mouse DNA sequence from clone RP23-212C14 on chromosome 11, complete
             sequence
          Length = 118444

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 618   atggagatcctgtaatattggatc 641
             |||||||||||||||| |||||||
Sbjct: 50326 atggagatcctgtaattttggatc 50349


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,174,245
Number of Sequences: 3902068
Number of extensions: 5174245
Number of successful extensions: 91042
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90892
Number of HSP's gapped (non-prelim): 150
length of query: 667
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 644
effective length of database: 17,143,297,704
effective search space: 11040283721376
effective search space used: 11040283721376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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