| Clone Name | bags10g06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476029.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 921 Score = 563 bits (284), Expect = e-157 Identities = 521/600 (86%) Strand = Plus / Plus Query: 1 tatgccgccaagttaatgcctacataaatcggcccttggatggcgatgcaatttctattg 60 |||| ||||||||||||||||||||||| || || || ||||| || ||| ||||||||| Sbjct: 320 tatgtcgccaagttaatgcctacataaaccgaccattagatggtgaggcagtttctattg 379 Query: 61 aagcagaaatgtcacacgaagatacagctgatgatgacatctcttccagagctgggaatt 120 |||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| Sbjct: 380 aagctgaaatgtcacatgaagacacagctgatgatgacatctcctccagagctgggaatt 439 Query: 121 tagttgatcagagcatgaccgctgatatggctggtgaagtgacttctgccgctggacctg 180 ||||||||||||||||||| |||||| | |||||||| ||||| ||||| ||||| || | Sbjct: 440 tagttgatcagagcatgactgctgatttagctggtgaggtgacatctgctgctgggccag 499 Query: 181 tacgactggctgaccttcagagaatattgagctctatacagccatctgatgctacggcag 240 |||| ||| ||||| ||||||||| |||| ||||||||||||| |||||| ||||| Sbjct: 500 tacggttggaagacctgcagagaatactgagtgctatacagccatcagatgctgtggcag 559 Query: 241 atcctgatgctggattgagactaggagacatcttgaagcctgatttgatattgccactaa 300 | |||||||||||||| || |||||||||||||||||||||||||| | || ||||| | Sbjct: 560 accctgatgctggattaggattaggagacatcttgaagcctgatttggtgttaccactca 619 Query: 301 ttgaaactttgcccattgaacagttggcatcacatcttccggagggttcttggactgctg 360 | |||||||||||||||||||||||||||||| ||||||| ||||| | |||||||||| Sbjct: 620 tggaaactttgcccattgaacagttggcatcatatcttccagagggcccatggactgctg 679 Query: 361 gtgatattcttgagctgctgcaaagtcctcctttgcgacagcaactggatgcttttactc 420 ||||||||||||| || ||||||||||||||||||| |||||| | || || ||||| | Sbjct: 680 gtgatattcttgaactattgcaaagtcctcctttgcggcagcaagtagaagcgtttaccc 739 Query: 421 atgtgctgcagactggccaaatagatcttgctcaatttggagtggaccctagtaaatata 480 ||||||||| |||||| ||||||||||| || ||||||||||| |||||||||||||||| Sbjct: 740 atgtgctgcggactgggcaaatagatctagcacaatttggagttgaccctagtaaatata 799 Query: 481 aattcacagttgcttcgttcctggaggcattggaagactctgtggcaaacgcttgtacag 540 |||||||||| ||||||||||||||||| | |||||||| |||||||| |||| || Sbjct: 800 aattcacagtagcttcgttcctggaggctcttgaagactccgtggcaaaagcttcaggag 859 Query: 541 atggaggcaatgattcaaagaccaagaaagatggtggaaatgatcccatggacgagagtt 600 ||||| ||| |||||| || || ||| || |||||||||||||||||||| ||||||| Sbjct: 860 ctggagacaaggattcagagtcccagagaggcggtggaaatgatcccatggatgagagtt 919
>dbj|AK068013.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129L24, full insert sequence Length = 1356 Score = 563 bits (284), Expect = e-157 Identities = 521/600 (86%) Strand = Plus / Plus Query: 1 tatgccgccaagttaatgcctacataaatcggcccttggatggcgatgcaatttctattg 60 |||| ||||||||||||||||||||||| || || || ||||| || ||| ||||||||| Sbjct: 438 tatgtcgccaagttaatgcctacataaaccgaccattagatggtgaggcagtttctattg 497 Query: 61 aagcagaaatgtcacacgaagatacagctgatgatgacatctcttccagagctgggaatt 120 |||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| Sbjct: 498 aagctgaaatgtcacatgaagacacagctgatgatgacatctcctccagagctgggaatt 557 Query: 121 tagttgatcagagcatgaccgctgatatggctggtgaagtgacttctgccgctggacctg 180 ||||||||||||||||||| |||||| | |||||||| ||||| ||||| ||||| || | Sbjct: 558 tagttgatcagagcatgactgctgatttagctggtgaggtgacatctgctgctgggccag 617 Query: 181 tacgactggctgaccttcagagaatattgagctctatacagccatctgatgctacggcag 240 |||| ||| ||||| ||||||||| |||| ||||||||||||| |||||| ||||| Sbjct: 618 tacggttggaagacctgcagagaatactgagtgctatacagccatcagatgctgtggcag 677 Query: 241 atcctgatgctggattgagactaggagacatcttgaagcctgatttgatattgccactaa 300 | |||||||||||||| || |||||||||||||||||||||||||| | || ||||| | Sbjct: 678 accctgatgctggattaggattaggagacatcttgaagcctgatttggtgttaccactca 737 Query: 301 ttgaaactttgcccattgaacagttggcatcacatcttccggagggttcttggactgctg 360 | |||||||||||||||||||||||||||||| ||||||| ||||| | |||||||||| Sbjct: 738 tggaaactttgcccattgaacagttggcatcatatcttccagagggcccatggactgctg 797 Query: 361 gtgatattcttgagctgctgcaaagtcctcctttgcgacagcaactggatgcttttactc 420 ||||||||||||| || ||||||||||||||||||| |||||| | || || ||||| | Sbjct: 798 gtgatattcttgaactattgcaaagtcctcctttgcggcagcaagtagaagcgtttaccc 857 Query: 421 atgtgctgcagactggccaaatagatcttgctcaatttggagtggaccctagtaaatata 480 ||||||||| |||||| ||||||||||| || ||||||||||| |||||||||||||||| Sbjct: 858 atgtgctgcggactgggcaaatagatctagcacaatttggagttgaccctagtaaatata 917 Query: 481 aattcacagttgcttcgttcctggaggcattggaagactctgtggcaaacgcttgtacag 540 |||||||||| ||||||||||||||||| | |||||||| |||||||| |||| || Sbjct: 918 aattcacagtagcttcgttcctggaggctcttgaagactccgtggcaaaagcttcaggag 977 Query: 541 atggaggcaatgattcaaagaccaagaaagatggtggaaatgatcccatggacgagagtt 600 ||||| ||| |||||| || || ||| || |||||||||||||||||||| ||||||| Sbjct: 978 ctggagacaaggattcagagtcccagagaggcggtggaaatgatcccatggatgagagtt 1037
>dbj|AK058332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-C10, full insert sequence Length = 1701 Score = 563 bits (284), Expect = e-157 Identities = 521/600 (86%) Strand = Plus / Plus Query: 1 tatgccgccaagttaatgcctacataaatcggcccttggatggcgatgcaatttctattg 60 |||| ||||||||||||||||||||||| || || || ||||| || ||| ||||||||| Sbjct: 457 tatgtcgccaagttaatgcctacataaaccgaccattagatggtgaggcagtttctattg 516 Query: 61 aagcagaaatgtcacacgaagatacagctgatgatgacatctcttccagagctgggaatt 120 |||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| Sbjct: 517 aagctgaaatgtcacatgaagacacagctgatgatgacatctcctccagagctgggaatt 576 Query: 121 tagttgatcagagcatgaccgctgatatggctggtgaagtgacttctgccgctggacctg 180 ||||||||||||||||||| |||||| | |||||||| ||||| ||||| ||||| || | Sbjct: 577 tagttgatcagagcatgactgctgatttagctggtgaggtgacatctgctgctgggccag 636 Query: 181 tacgactggctgaccttcagagaatattgagctctatacagccatctgatgctacggcag 240 |||| ||| ||||| ||||||||| |||| ||||||||||||| |||||| ||||| Sbjct: 637 tacggttggaagacctgcagagaatactgagtgctatacagccatcagatgctgtggcag 696 Query: 241 atcctgatgctggattgagactaggagacatcttgaagcctgatttgatattgccactaa 300 | |||||||||||||| || |||||||||||||||||||||||||| | || ||||| | Sbjct: 697 accctgatgctggattaggattaggagacatcttgaagcctgatttggtgttaccactca 756 Query: 301 ttgaaactttgcccattgaacagttggcatcacatcttccggagggttcttggactgctg 360 | |||||||||||||||||||||||||||||| ||||||| ||||| | |||||||||| Sbjct: 757 tggaaactttgcccattgaacagttggcatcatatcttccagagggcccatggactgctg 816 Query: 361 gtgatattcttgagctgctgcaaagtcctcctttgcgacagcaactggatgcttttactc 420 ||||||||||||| || ||||||||||||||||||| |||||| | || || ||||| | Sbjct: 817 gtgatattcttgaactattgcaaagtcctcctttgcggcagcaagtagaagcgtttaccc 876 Query: 421 atgtgctgcagactggccaaatagatcttgctcaatttggagtggaccctagtaaatata 480 ||||||||| |||||| ||||||||||| || ||||||||||| |||||||||||||||| Sbjct: 877 atgtgctgcggactgggcaaatagatctagcacaatttggagttgaccctagtaaatata 936 Query: 481 aattcacagttgcttcgttcctggaggcattggaagactctgtggcaaacgcttgtacag 540 |||||||||| ||||||||||||||||| | |||||||| |||||||| |||| || Sbjct: 937 aattcacagtagcttcgttcctggaggctcttgaagactccgtggcaaaagcttcaggag 996 Query: 541 atggaggcaatgattcaaagaccaagaaagatggtggaaatgatcccatggacgagagtt 600 ||||| ||| |||||| || || ||| || |||||||||||||||||||| ||||||| Sbjct: 997 ctggagacaaggattcagagtcccagagaggcggtggaaatgatcccatggatgagagtt 1056
>gb|AY104877.1| Zea mays PCO129004 mRNA sequence Length = 1659 Score = 331 bits (167), Expect = 2e-87 Identities = 395/469 (84%), Gaps = 9/469 (1%) Strand = Plus / Plus Query: 55 ctattgaagcagaaatgtcacacgaagatacagctgatgatgacatctcttccagagctg 114 ||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| Sbjct: 626 ctattgaagcagaaatgtct---gaagatacggctgatgatgatatctcttccagagctg 682 Query: 115 ggaatttagttgatcagagcatgaccgctgatatggctggtgaagtgacttctgccgctg 174 ||||| ||||||| |||||||||||||||| |||||||||||||||| ||||| |||| Sbjct: 683 ggaatctagttga---gagcatgaccgctgatttggctggtgaagtgacgtctgctgctg 739 Query: 175 gacctgtacgactggctgaccttcagagaatattgagctctatacagccatctgatgcta 234 |||||||||| ||| || || |||||||| |||| | |||||| |||| | |||| Sbjct: 740 gacctgtacgcttggaggatctgcagagaattctgagtgcaatacagtcatcaggtgctg 799 Query: 235 cggcagatcctgatgctggattgagactaggagacatcttgaagcctgatttgatattgc 294 | || || |||||||||||| | |||||||||||||||||||||||||| || | |||| Sbjct: 800 cagctgaccctgatgctggagtaggactaggagacatcttgaagcctgatctggtcttgc 859 Query: 295 cactaattgaaactttgcccattgaacagttggcatcacatcttccggagggt---tctt 351 || ||||||| |||||||||||||| |||||||||||||||||||||||| || | Sbjct: 860 cattaattgaggacttgcccattgaacaattggcatcacatcttccggagggtggctcat 919 Query: 352 ggactgctggtgatattcttgagctgctgcaaagtcctcctttgcgacagcaactggatg 411 ||| | |||||||||| ||||||| || ||||||||||||||||| || ||| | |||| Sbjct: 920 ggagtcctggtgatatcgttgagcttctccaaagtcctcctttgcgccaacaattagatg 979 Query: 412 cttttactcatgtgctgcagactggccaaatagatcttgctcaatttggagtggacccta 471 | || || || || |||| |||||| || ||||||||||||||||||||||| |||||| Sbjct: 980 cattcacccacgttctgcggactgggcagatagatcttgctcaatttggagttgaccctg 1039 Query: 472 gtaaatataaattcacagttgcttcgttcctggaggcattggaagactc 520 |||||||| ||||| || | |||||||||||||||||||||||||| Sbjct: 1040 acaaatataagttcacggtggtgtcgttcctggaggcattggaagactc 1088 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 574 gtggaaatgatcccatggacgagagttgat 603 ||||||||||| |||||||||||||||||| Sbjct: 1145 gtggaaatgatgccatggacgagagttgat 1174 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 9 caagttaatgcctacataaatcg 31 ||||||||||||||||||||||| Sbjct: 571 caagttaatgcctacataaatcg 593
>gb|DQ196183.1|DQ196183S1 Triticum monococcum cultivar DV92 putative adhesion regulating protein gene, partial cds Length = 1348 Score = 218 bits (110), Expect = 2e-53 Identities = 119/122 (97%) Strand = Plus / Minus Query: 107 cagagctgggaatttagttgatcagagcatgaccgctgatatggctggtgaagtgacttc 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 393 cagagctgggaatttagttgatcagagcatgaccgctgatatggctggtgaagtgacttc 334 Query: 167 tgccgctggacctgtacgactggctgaccttcagagaatattgagctctatacagccatc 226 |||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| Sbjct: 333 tgccgctggacctgtacgactgtctgaccttcagagaatattgagttctatacaaccatc 274 Query: 227 tg 228 || Sbjct: 273 tg 272 Score = 135 bits (68), Expect = 2e-28 Identities = 80/84 (95%) Strand = Plus / Minus Query: 252 ggattgagactaggagacatcttgaagcctgatttgatattgccactaattgaaactttg 311 |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 84 ggattgagactaggagacatcttgaaacctgaattgatattgcccctaattgaaactttg 25 Query: 312 cccattgaacagttggcatcacat 335 ||||||| |||||||||||||||| Sbjct: 24 cccattggacagttggcatcacat 1 Score = 133 bits (67), Expect = 8e-28 Identities = 70/71 (98%) Strand = Plus / Minus Query: 39 gatggcgatgcaatttctattgaagcagaaatgtcacacgaagatacagctgatgatgac 98 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1216 gatggcgatgcaatttctattgaagcagaaatgtcacatgaagatacagctgatgatgac 1157 Query: 99 atctcttccag 109 ||||||||||| Sbjct: 1156 atctcttccag 1146 Score = 77.8 bits (39), Expect = 4e-11 Identities = 39/39 (100%) Strand = Plus / Minus Query: 1 tatgccgccaagttaatgcctacataaatcggcccttgg 39 ||||||||||||||||||||||||||||||||||||||| Sbjct: 1321 tatgccgccaagttaatgcctacataaatcggcccttgg 1283 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 228 gatgctacggcagatcctgatgctgg 253 ||||||| |||||||||||||||||| Sbjct: 185 gatgctatggcagatcctgatgctgg 160
>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0030I14, complete sequence Length = 159035 Score = 111 bits (56), Expect = 3e-21 Identities = 104/120 (86%) Strand = Plus / Minus Query: 107 cagagctgggaatttagttgatcagagcatgaccgctgatatggctggtgaagtgacttc 166 ||||||||||||||||||||||||||||||||| |||||| | |||||||| ||||| || Sbjct: 47499 cagagctgggaatttagttgatcagagcatgactgctgatttagctggtgaggtgacatc 47440 Query: 167 tgccgctggacctgtacgactggctgaccttcagagaatattgagctctatacagccatc 226 ||| ||||| || ||||| ||| ||||| ||||||||| |||| ||||||||||||| Sbjct: 47439 tgctgctgggccagtacggttggaagacctgcagagaatactgagtgctatacagccatc 47380 Score = 111 bits (56), Expect = 3e-21 Identities = 77/84 (91%) Strand = Plus / Minus Query: 262 taggagacatcttgaagcctgatttgatattgccactaattgaaactttgcccattgaac 321 |||||||||||||||||||||||||| | || ||||| || ||||||||||||||||||| Sbjct: 47170 taggagacatcttgaagcctgatttggtgttaccactcatggaaactttgcccattgaac 47111 Query: 322 agttggcatcacatcttccggagg 345 ||||||||||| ||||||| |||| Sbjct: 47110 agttggcatcatatcttccagagg 47087 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Minus Query: 39 gatggcgatgcaatttctattgaagcagaaatgtcacacgaagatacagctgatgatgac 98 ||||| || ||| ||||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct: 47934 gatggtgaggcagtttctattgaagctgaaatgtcacatgaagacacagctgatgatgac 47875 Query: 99 atctcttccag 109 ||||| ||||| Sbjct: 47874 atctcctccag 47864 Score = 85.7 bits (43), Expect = 2e-13 Identities = 103/123 (83%) Strand = Plus / Minus Query: 478 ataaattcacagttgcttcgttcctggaggcattggaagactctgtggcaaacgcttgta 537 ||||||||||||| ||||||||||||||||| | |||||||| |||||||| |||| Sbjct: 46370 ataaattcacagtagcttcgttcctggaggctcttgaagactccgtggcaaaagcttcag 46311 Query: 538 cagatggaggcaatgattcaaagaccaagaaagatggtggaaatgatcccatggacgaga 597 || ||||| ||| |||||| || || ||| || |||||||||||||||||||| |||| Sbjct: 46310 gagctggagacaaggattcagagtcccagagaggcggtggaaatgatcccatggatgaga 46251 Query: 598 gtt 600 ||| Sbjct: 46250 gtt 46248 Score = 75.8 bits (38), Expect = 2e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 351 tggactgctggtgatattcttgagctgctgcaaagtcctcctttgcgacagcaa 404 ||||||||||||||||||||||| || ||||||||||||||||||| |||||| Sbjct: 47000 tggactgctggtgatattcttgaactattgcaaagtcctcctttgcggcagcaa 46947 Score = 69.9 bits (35), Expect = 1e-08 Identities = 50/55 (90%) Strand = Plus / Minus Query: 423 gtgctgcagactggccaaatagatcttgctcaatttggagtggaccctagtaaat 477 ||||||| |||||| ||||||||||| || ||||||||||| ||||||||||||| Sbjct: 46836 gtgctgcggactgggcaaatagatctagcacaatttggagttgaccctagtaaat 46782 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Minus Query: 1 tatgccgccaagttaatgcctacataaa 28 |||| ||||||||||||||||||||||| Sbjct: 48048 tatgtcgccaagttaatgcctacataaa 48021
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 111 bits (56), Expect = 3e-21 Identities = 104/120 (86%) Strand = Plus / Minus Query: 107 cagagctgggaatttagttgatcagagcatgaccgctgatatggctggtgaagtgacttc 166 ||||||||||||||||||||||||||||||||| |||||| | |||||||| ||||| || Sbjct: 29399474 cagagctgggaatttagttgatcagagcatgactgctgatttagctggtgaggtgacatc 29399415 Query: 167 tgccgctggacctgtacgactggctgaccttcagagaatattgagctctatacagccatc 226 ||| ||||| || ||||| ||| ||||| ||||||||| |||| ||||||||||||| Sbjct: 29399414 tgctgctgggccagtacggttggaagacctgcagagaatactgagtgctatacagccatc 29399355 Score = 111 bits (56), Expect = 3e-21 Identities = 77/84 (91%) Strand = Plus / Minus Query: 262 taggagacatcttgaagcctgatttgatattgccactaattgaaactttgcccattgaac 321 |||||||||||||||||||||||||| | || ||||| || ||||||||||||||||||| Sbjct: 29399145 taggagacatcttgaagcctgatttggtgttaccactcatggaaactttgcccattgaac 29399086 Query: 322 agttggcatcacatcttccggagg 345 ||||||||||| ||||||| |||| Sbjct: 29399085 agttggcatcatatcttccagagg 29399062 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Minus Query: 39 gatggcgatgcaatttctattgaagcagaaatgtcacacgaagatacagctgatgatgac 98 ||||| || ||| ||||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct: 29399909 gatggtgaggcagtttctattgaagctgaaatgtcacatgaagacacagctgatgatgac 29399850 Query: 99 atctcttccag 109 ||||| ||||| Sbjct: 29399849 atctcctccag 29399839 Score = 85.7 bits (43), Expect = 2e-13 Identities = 103/123 (83%) Strand = Plus / Minus Query: 478 ataaattcacagttgcttcgttcctggaggcattggaagactctgtggcaaacgcttgta 537 ||||||||||||| ||||||||||||||||| | |||||||| |||||||| |||| Sbjct: 29398345 ataaattcacagtagcttcgttcctggaggctcttgaagactccgtggcaaaagcttcag 29398286 Query: 538 cagatggaggcaatgattcaaagaccaagaaagatggtggaaatgatcccatggacgaga 597 || ||||| ||| |||||| || || ||| || |||||||||||||||||||| |||| Sbjct: 29398285 gagctggagacaaggattcagagtcccagagaggcggtggaaatgatcccatggatgaga 29398226 Query: 598 gtt 600 ||| Sbjct: 29398225 gtt 29398223 Score = 75.8 bits (38), Expect = 2e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 351 tggactgctggtgatattcttgagctgctgcaaagtcctcctttgcgacagcaa 404 ||||||||||||||||||||||| || ||||||||||||||||||| |||||| Sbjct: 29398975 tggactgctggtgatattcttgaactattgcaaagtcctcctttgcggcagcaa 29398922 Score = 69.9 bits (35), Expect = 1e-08 Identities = 50/55 (90%) Strand = Plus / Minus Query: 423 gtgctgcagactggccaaatagatcttgctcaatttggagtggaccctagtaaat 477 ||||||| |||||| ||||||||||| || ||||||||||| ||||||||||||| Sbjct: 29398811 gtgctgcggactgggcaaatagatctagcacaatttggagttgaccctagtaaat 29398757 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Minus Query: 1 tatgccgccaagttaatgcctacataaa 28 |||| ||||||||||||||||||||||| Sbjct: 29400023 tatgtcgccaagttaatgcctacataaa 29399996
>gb|AC148238.4| Medicago truncatula clone mth2-4a11, complete sequence Length = 98424 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 267 gacatcttgaagcctgatttgatattgcca 296 ||||| |||||||||||| ||||||||||| Sbjct: 70402 gacattttgaagcctgatctgatattgcca 70431
>gb|AC131079.11| Mus musculus chromosome 14, clone RP23-434L17, complete sequence Length = 203276 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 tgaccttcagagaatattgag 211 ||||||||||||||||||||| Sbjct: 66592 tgaccttcagagaatattgag 66612
>gb|AC146277.2| Pan troglodytes BAC clone CH251-17J20 from X, complete sequence Length = 160219 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 438 caaatagatcttgctcaatttggag 462 |||||||||||| |||||||||||| Sbjct: 90660 caaatagatctttctcaatttggag 90684
>gb|AC146276.2| Pan troglodytes BAC clone CH251-149B14 from X, complete sequence Length = 180335 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 438 caaatagatcttgctcaatttggag 462 |||||||||||| |||||||||||| Sbjct: 107482 caaatagatctttctcaatttggag 107458
>gb|AC144386.2| Pan troglodytes BAC clone CH251-313C12 from X, complete sequence Length = 202661 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 438 caaatagatcttgctcaatttggag 462 |||||||||||| |||||||||||| Sbjct: 202237 caaatagatctttctcaatttggag 202213
>emb|Z70689.2|HSU19D8 Human DNA sequence from clone LL0XNC01-19D8 on chromosome X Contains the 5' end of the NXF2 gene for nuclear RNA export factor 2, complete sequence Length = 33884 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 438 caaatagatcttgctcaatttggag 462 |||||||||||| |||||||||||| Sbjct: 6067 caaatagatctttctcaatttggag 6043
>emb|AL590069.5| Human DNA sequence from clone RP11-353J17 on chromosome X, complete sequence Length = 158828 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 438 caaatagatcttgctcaatttggag 462 |||||||||||| |||||||||||| Sbjct: 129126 caaatagatctttctcaatttggag 129102
>gb|AC132217.15| Homo sapiens chromosome 11, clone RP11-889I17, complete sequence Length = 170027 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 542 tggaggcaatgattcaaagac 562 ||||||||||||||||||||| Sbjct: 145922 tggaggcaatgattcaaagac 145902
>emb|AJ601384.1| Paracentrotus lividus mRNA for alpha-5 collagen (coll5alpha gene) Length = 8401 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 tacagctgatgatgacatctc 103 ||||||||||||||||||||| Sbjct: 3352 tacagctgatgatgacatctc 3332
>gb|AC151524.2| Medicago truncatula chromosome 7 BAC clone mth2-67a20, complete sequence Length = 99692 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 tgattcaaagaccaagaaag 570 |||||||||||||||||||| Sbjct: 11149 tgattcaaagaccaagaaag 11168
>gb|AC154426.2| Mus musculus BAC clone RP24-199A21 from chromosome 14, complete sequence Length = 210568 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 472 gtaaatataaattcacagttgctt 495 |||||||||||||||||| ||||| Sbjct: 43733 gtaaatataaattcacagctgctt 43710
>gb|AC116781.9| Mus musculus chromosome 16, clone RP24-134G20, complete sequence Length = 166568 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 tctcttccagagctgggaat 119 |||||||||||||||||||| Sbjct: 165903 tctcttccagagctgggaat 165884
>ref|XR_002961.1| PREDICTED: Mus musculus similar to ribosomal protein L6 (LOC382872), mRNA Length = 1041 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 tcatgtgctgcagactggcc 438 |||||||||||||||||||| Sbjct: 861 tcatgtgctgcagactggcc 880
>gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete sequence Length = 131563 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 tgattcaaagaccaagaaag 570 |||||||||||||||||||| Sbjct: 21759 tgattcaaagaccaagaaag 21740
>emb|AL121931.10|HS1131C10 Human DNA sequence from clone RP5-1131C10 on chromosome 6q12-13, complete sequence Length = 133751 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 agactggccaaatagatctt 449 |||||||||||||||||||| Sbjct: 30092 agactggccaaatagatctt 30073
>gb|AC013587.10| Homo sapiens chromosome 18, clone RP11-7L24, complete sequence Length = 128755 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 gtaaatataaattcacagtt 491 |||||||||||||||||||| Sbjct: 80148 gtaaatataaattcacagtt 80129
>emb|BX571771.5| Zebrafish DNA sequence from clone CH211-160F8 in linkage group 21, complete sequence Length = 162245 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gcagatcctgatgctggatt 256 |||||||||||||||||||| Sbjct: 66383 gcagatcctgatgctggatt 66364
>gb|AC096769.3| Homo sapiens BAC clone RP11-734O19 from 4, complete sequence Length = 70806 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 473 taaatataaattcacagttgcttc 496 |||||||||| ||||||||||||| Sbjct: 59710 taaatataaaatcacagttgcttc 59733
>gb|AC163699.4| Gallus gallus BAC clone CH261-138A17 from chromosome unknown, complete sequence Length = 240555 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 ctggatgcttttactcatgt 424 |||||||||||||||||||| Sbjct: 39300 ctggatgcttttactcatgt 39281
>gb|AC104830.4| Homo sapiens BAC clone RP11-811O14 from 2, complete sequence Length = 67709 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tagttgatcagagcatgacc 140 |||||||||||||||||||| Sbjct: 39896 tagttgatcagagcatgacc 39915
>gb|AC164654.3| Gallus gallus BAC clone CH261-5H7 from chromosome unknown, complete sequence Length = 250515 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 ctggatgcttttactcatgt 424 |||||||||||||||||||| Sbjct: 214138 ctggatgcttttactcatgt 214119
>gb|AC154333.2| Mus musculus BAC clone RP24-496M21 from 14, complete sequence Length = 163565 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 tcatgtgctgcagactggcc 438 |||||||||||||||||||| Sbjct: 28669 tcatgtgctgcagactggcc 28650
>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome Length = 1884661 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 ttgaacagttggcatcacatcttc 339 |||| ||||||||||||||||||| Sbjct: 1354854 ttgaccagttggcatcacatcttc 1354877
>emb|CT573047.6| Mouse DNA sequence from clone RP23-73L5 on chromosome 14, complete sequence Length = 211944 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 tcatgtgctgcagactggcc 438 |||||||||||||||||||| Sbjct: 101489 tcatgtgctgcagactggcc 101508
>emb|AL672244.15| Mouse DNA sequence from clone RP23-43I8 on chromosome 16, complete sequence Length = 243114 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 tctcttccagagctgggaat 119 |||||||||||||||||||| Sbjct: 140943 tctcttccagagctgggaat 140962
>emb|AL928712.8| Zebrafish DNA sequence from clone CH211-220O11 in linkage group 17, complete sequence Length = 137441 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gactggctgaccttcagaga 203 |||||||||||||||||||| Sbjct: 101990 gactggctgaccttcagaga 101971
>emb|AL626772.10| Mouse DNA sequence from clone RP23-90D4 on chromosome 4, complete sequence Length = 230614 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 agctgctgcaaagtcctcct 392 |||||||||||||||||||| Sbjct: 62861 agctgctgcaaagtcctcct 62842 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,319,711 Number of Sequences: 3902068 Number of extensions: 5319711 Number of successful extensions: 96801 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96679 Number of HSP's gapped (non-prelim): 112 length of query: 627 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 604 effective length of database: 17,143,297,704 effective search space: 10354551813216 effective search space used: 10354551813216 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)