ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags10g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_476029.1| Oryza sativa (japonica cultivar-group), predic... 563 e-157
2dbj|AK068013.1| Oryza sativa (japonica cultivar-group) cDNA clon... 563 e-157
3dbj|AK058332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 563 e-157
4gb|AY104877.1| Zea mays PCO129004 mRNA sequence 331 2e-87
5gb|DQ196183.1|DQ196183S1 Triticum monococcum cultivar DV92 putat... 218 2e-53
6gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome... 111 3e-21
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
8gb|AC148238.4| Medicago truncatula clone mth2-4a11, complete seq... 44 0.55
9gb|AC131079.11| Mus musculus chromosome 14, clone RP23-434L17, c... 42 2.2
10gb|AC146277.2| Pan troglodytes BAC clone CH251-17J20 from X, com... 42 2.2
11gb|AC146276.2| Pan troglodytes BAC clone CH251-149B14 from X, co... 42 2.2
12gb|AC144386.2| Pan troglodytes BAC clone CH251-313C12 from X, co... 42 2.2
13emb|Z70689.2|HSU19D8 Human DNA sequence from clone LL0XNC01-19D8... 42 2.2
14emb|AL590069.5| Human DNA sequence from clone RP11-353J17 on chr... 42 2.2
15gb|AC132217.15| Homo sapiens chromosome 11, clone RP11-889I17, c... 42 2.2
16emb|AJ601384.1| Paracentrotus lividus mRNA for alpha-5 collagen ... 42 2.2
17gb|AC151524.2| Medicago truncatula chromosome 7 BAC clone mth2-6... 40 8.5
18gb|AC154426.2| Mus musculus BAC clone RP24-199A21 from chromosom... 40 8.5
19gb|AC116781.9| Mus musculus chromosome 16, clone RP24-134G20, co... 40 8.5
20ref|XR_002961.1| PREDICTED: Mus musculus similar to ribosomal pr... 40 8.5
21gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete s... 40 8.5
22emb|AL121931.10|HS1131C10 Human DNA sequence from clone RP5-1131... 40 8.5
23gb|AC013587.10| Homo sapiens chromosome 18, clone RP11-7L24, com... 40 8.5
24emb|BX571771.5| Zebrafish DNA sequence from clone CH211-160F8 in... 40 8.5
25gb|AC096769.3| Homo sapiens BAC clone RP11-734O19 from 4, comple... 40 8.5
26gb|AC163699.4| Gallus gallus BAC clone CH261-138A17 from chromos... 40 8.5
27gb|AC104830.4| Homo sapiens BAC clone RP11-811O14 from 2, comple... 40 8.5
28gb|AC164654.3| Gallus gallus BAC clone CH261-5H7 from chromosome... 40 8.5
29gb|AC154333.2| Mus musculus BAC clone RP24-496M21 from 14, compl... 40 8.5
30emb|CR936503.1| Lactobacillus sakei strain 23K complete genome 40 8.5
31emb|CT573047.6| Mouse DNA sequence from clone RP23-73L5 on chrom... 40 8.5
32emb|AL672244.15| Mouse DNA sequence from clone RP23-43I8 on chro... 40 8.5
33emb|AL928712.8| Zebrafish DNA sequence from clone CH211-220O11 i... 40 8.5
34emb|AL626772.10| Mouse DNA sequence from clone RP23-90D4 on chro... 40 8.5

>ref|XM_476029.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 921

 Score =  563 bits (284), Expect = e-157
 Identities = 521/600 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgccgccaagttaatgcctacataaatcggcccttggatggcgatgcaatttctattg 60
           |||| ||||||||||||||||||||||| || || || ||||| || ||| |||||||||
Sbjct: 320 tatgtcgccaagttaatgcctacataaaccgaccattagatggtgaggcagtttctattg 379

                                                                       
Query: 61  aagcagaaatgtcacacgaagatacagctgatgatgacatctcttccagagctgggaatt 120
           |||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 380 aagctgaaatgtcacatgaagacacagctgatgatgacatctcctccagagctgggaatt 439

                                                                       
Query: 121 tagttgatcagagcatgaccgctgatatggctggtgaagtgacttctgccgctggacctg 180
           ||||||||||||||||||| |||||| | |||||||| ||||| ||||| ||||| || |
Sbjct: 440 tagttgatcagagcatgactgctgatttagctggtgaggtgacatctgctgctgggccag 499

                                                                       
Query: 181 tacgactggctgaccttcagagaatattgagctctatacagccatctgatgctacggcag 240
           ||||  |||  ||||| ||||||||| ||||  ||||||||||||| ||||||  |||||
Sbjct: 500 tacggttggaagacctgcagagaatactgagtgctatacagccatcagatgctgtggcag 559

                                                                       
Query: 241 atcctgatgctggattgagactaggagacatcttgaagcctgatttgatattgccactaa 300
           | ||||||||||||||  || |||||||||||||||||||||||||| | || ||||| |
Sbjct: 560 accctgatgctggattaggattaggagacatcttgaagcctgatttggtgttaccactca 619

                                                                       
Query: 301 ttgaaactttgcccattgaacagttggcatcacatcttccggagggttcttggactgctg 360
           | |||||||||||||||||||||||||||||| ||||||| |||||  | ||||||||||
Sbjct: 620 tggaaactttgcccattgaacagttggcatcatatcttccagagggcccatggactgctg 679

                                                                       
Query: 361 gtgatattcttgagctgctgcaaagtcctcctttgcgacagcaactggatgcttttactc 420
           ||||||||||||| ||  ||||||||||||||||||| |||||| | || || ||||| |
Sbjct: 680 gtgatattcttgaactattgcaaagtcctcctttgcggcagcaagtagaagcgtttaccc 739

                                                                       
Query: 421 atgtgctgcagactggccaaatagatcttgctcaatttggagtggaccctagtaaatata 480
           ||||||||| |||||| ||||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 740 atgtgctgcggactgggcaaatagatctagcacaatttggagttgaccctagtaaatata 799

                                                                       
Query: 481 aattcacagttgcttcgttcctggaggcattggaagactctgtggcaaacgcttgtacag 540
           |||||||||| |||||||||||||||||  | |||||||| |||||||| ||||    ||
Sbjct: 800 aattcacagtagcttcgttcctggaggctcttgaagactccgtggcaaaagcttcaggag 859

                                                                       
Query: 541 atggaggcaatgattcaaagaccaagaaagatggtggaaatgatcccatggacgagagtt 600
            ||||| ||| |||||| || || ||| ||  |||||||||||||||||||| |||||||
Sbjct: 860 ctggagacaaggattcagagtcccagagaggcggtggaaatgatcccatggatgagagtt 919



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>dbj|AK068013.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129L24, full
            insert sequence
          Length = 1356

 Score =  563 bits (284), Expect = e-157
 Identities = 521/600 (86%)
 Strand = Plus / Plus

                                                                        
Query: 1    tatgccgccaagttaatgcctacataaatcggcccttggatggcgatgcaatttctattg 60
            |||| ||||||||||||||||||||||| || || || ||||| || ||| |||||||||
Sbjct: 438  tatgtcgccaagttaatgcctacataaaccgaccattagatggtgaggcagtttctattg 497

                                                                        
Query: 61   aagcagaaatgtcacacgaagatacagctgatgatgacatctcttccagagctgggaatt 120
            |||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 498  aagctgaaatgtcacatgaagacacagctgatgatgacatctcctccagagctgggaatt 557

                                                                        
Query: 121  tagttgatcagagcatgaccgctgatatggctggtgaagtgacttctgccgctggacctg 180
            ||||||||||||||||||| |||||| | |||||||| ||||| ||||| ||||| || |
Sbjct: 558  tagttgatcagagcatgactgctgatttagctggtgaggtgacatctgctgctgggccag 617

                                                                        
Query: 181  tacgactggctgaccttcagagaatattgagctctatacagccatctgatgctacggcag 240
            ||||  |||  ||||| ||||||||| ||||  ||||||||||||| ||||||  |||||
Sbjct: 618  tacggttggaagacctgcagagaatactgagtgctatacagccatcagatgctgtggcag 677

                                                                        
Query: 241  atcctgatgctggattgagactaggagacatcttgaagcctgatttgatattgccactaa 300
            | ||||||||||||||  || |||||||||||||||||||||||||| | || ||||| |
Sbjct: 678  accctgatgctggattaggattaggagacatcttgaagcctgatttggtgttaccactca 737

                                                                        
Query: 301  ttgaaactttgcccattgaacagttggcatcacatcttccggagggttcttggactgctg 360
            | |||||||||||||||||||||||||||||| ||||||| |||||  | ||||||||||
Sbjct: 738  tggaaactttgcccattgaacagttggcatcatatcttccagagggcccatggactgctg 797

                                                                        
Query: 361  gtgatattcttgagctgctgcaaagtcctcctttgcgacagcaactggatgcttttactc 420
            ||||||||||||| ||  ||||||||||||||||||| |||||| | || || ||||| |
Sbjct: 798  gtgatattcttgaactattgcaaagtcctcctttgcggcagcaagtagaagcgtttaccc 857

                                                                        
Query: 421  atgtgctgcagactggccaaatagatcttgctcaatttggagtggaccctagtaaatata 480
            ||||||||| |||||| ||||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 858  atgtgctgcggactgggcaaatagatctagcacaatttggagttgaccctagtaaatata 917

                                                                        
Query: 481  aattcacagttgcttcgttcctggaggcattggaagactctgtggcaaacgcttgtacag 540
            |||||||||| |||||||||||||||||  | |||||||| |||||||| ||||    ||
Sbjct: 918  aattcacagtagcttcgttcctggaggctcttgaagactccgtggcaaaagcttcaggag 977

                                                                        
Query: 541  atggaggcaatgattcaaagaccaagaaagatggtggaaatgatcccatggacgagagtt 600
             ||||| ||| |||||| || || ||| ||  |||||||||||||||||||| |||||||
Sbjct: 978  ctggagacaaggattcagagtcccagagaggcggtggaaatgatcccatggatgagagtt 1037



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>dbj|AK058332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-C10, full
            insert sequence
          Length = 1701

 Score =  563 bits (284), Expect = e-157
 Identities = 521/600 (86%)
 Strand = Plus / Plus

                                                                        
Query: 1    tatgccgccaagttaatgcctacataaatcggcccttggatggcgatgcaatttctattg 60
            |||| ||||||||||||||||||||||| || || || ||||| || ||| |||||||||
Sbjct: 457  tatgtcgccaagttaatgcctacataaaccgaccattagatggtgaggcagtttctattg 516

                                                                        
Query: 61   aagcagaaatgtcacacgaagatacagctgatgatgacatctcttccagagctgggaatt 120
            |||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 517  aagctgaaatgtcacatgaagacacagctgatgatgacatctcctccagagctgggaatt 576

                                                                        
Query: 121  tagttgatcagagcatgaccgctgatatggctggtgaagtgacttctgccgctggacctg 180
            ||||||||||||||||||| |||||| | |||||||| ||||| ||||| ||||| || |
Sbjct: 577  tagttgatcagagcatgactgctgatttagctggtgaggtgacatctgctgctgggccag 636

                                                                        
Query: 181  tacgactggctgaccttcagagaatattgagctctatacagccatctgatgctacggcag 240
            ||||  |||  ||||| ||||||||| ||||  ||||||||||||| ||||||  |||||
Sbjct: 637  tacggttggaagacctgcagagaatactgagtgctatacagccatcagatgctgtggcag 696

                                                                        
Query: 241  atcctgatgctggattgagactaggagacatcttgaagcctgatttgatattgccactaa 300
            | ||||||||||||||  || |||||||||||||||||||||||||| | || ||||| |
Sbjct: 697  accctgatgctggattaggattaggagacatcttgaagcctgatttggtgttaccactca 756

                                                                        
Query: 301  ttgaaactttgcccattgaacagttggcatcacatcttccggagggttcttggactgctg 360
            | |||||||||||||||||||||||||||||| ||||||| |||||  | ||||||||||
Sbjct: 757  tggaaactttgcccattgaacagttggcatcatatcttccagagggcccatggactgctg 816

                                                                        
Query: 361  gtgatattcttgagctgctgcaaagtcctcctttgcgacagcaactggatgcttttactc 420
            ||||||||||||| ||  ||||||||||||||||||| |||||| | || || ||||| |
Sbjct: 817  gtgatattcttgaactattgcaaagtcctcctttgcggcagcaagtagaagcgtttaccc 876

                                                                        
Query: 421  atgtgctgcagactggccaaatagatcttgctcaatttggagtggaccctagtaaatata 480
            ||||||||| |||||| ||||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 877  atgtgctgcggactgggcaaatagatctagcacaatttggagttgaccctagtaaatata 936

                                                                        
Query: 481  aattcacagttgcttcgttcctggaggcattggaagactctgtggcaaacgcttgtacag 540
            |||||||||| |||||||||||||||||  | |||||||| |||||||| ||||    ||
Sbjct: 937  aattcacagtagcttcgttcctggaggctcttgaagactccgtggcaaaagcttcaggag 996

                                                                        
Query: 541  atggaggcaatgattcaaagaccaagaaagatggtggaaatgatcccatggacgagagtt 600
             ||||| ||| |||||| || || ||| ||  |||||||||||||||||||| |||||||
Sbjct: 997  ctggagacaaggattcagagtcccagagaggcggtggaaatgatcccatggatgagagtt 1056



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>gb|AY104877.1| Zea mays PCO129004 mRNA sequence
          Length = 1659

 Score =  331 bits (167), Expect = 2e-87
 Identities = 395/469 (84%), Gaps = 9/469 (1%)
 Strand = Plus / Plus

                                                                        
Query: 55   ctattgaagcagaaatgtcacacgaagatacagctgatgatgacatctcttccagagctg 114
            |||||||||||||||||||    |||||||| ||||||||||| ||||||||||||||||
Sbjct: 626  ctattgaagcagaaatgtct---gaagatacggctgatgatgatatctcttccagagctg 682

                                                                        
Query: 115  ggaatttagttgatcagagcatgaccgctgatatggctggtgaagtgacttctgccgctg 174
            ||||| |||||||   |||||||||||||||| |||||||||||||||| ||||| ||||
Sbjct: 683  ggaatctagttga---gagcatgaccgctgatttggctggtgaagtgacgtctgctgctg 739

                                                                        
Query: 175  gacctgtacgactggctgaccttcagagaatattgagctctatacagccatctgatgcta 234
            ||||||||||  |||  || || ||||||||  ||||  | |||||| |||| | |||| 
Sbjct: 740  gacctgtacgcttggaggatctgcagagaattctgagtgcaatacagtcatcaggtgctg 799

                                                                        
Query: 235  cggcagatcctgatgctggattgagactaggagacatcttgaagcctgatttgatattgc 294
            | || || |||||||||||| |  |||||||||||||||||||||||||| || | ||||
Sbjct: 800  cagctgaccctgatgctggagtaggactaggagacatcttgaagcctgatctggtcttgc 859

                                                                        
Query: 295  cactaattgaaactttgcccattgaacagttggcatcacatcttccggagggt---tctt 351
            || |||||||    |||||||||||||| ||||||||||||||||||||||||   || |
Sbjct: 860  cattaattgaggacttgcccattgaacaattggcatcacatcttccggagggtggctcat 919

                                                                        
Query: 352  ggactgctggtgatattcttgagctgctgcaaagtcctcctttgcgacagcaactggatg 411
            ||| | ||||||||||  ||||||| || ||||||||||||||||| || ||| | ||||
Sbjct: 920  ggagtcctggtgatatcgttgagcttctccaaagtcctcctttgcgccaacaattagatg 979

                                                                        
Query: 412  cttttactcatgtgctgcagactggccaaatagatcttgctcaatttggagtggacccta 471
            | || || || || |||| |||||| || ||||||||||||||||||||||| |||||| 
Sbjct: 980  cattcacccacgttctgcggactgggcagatagatcttgctcaatttggagttgaccctg 1039

                                                             
Query: 472  gtaaatataaattcacagttgcttcgttcctggaggcattggaagactc 520
              |||||||| ||||| || |  ||||||||||||||||||||||||||
Sbjct: 1040 acaaatataagttcacggtggtgtcgttcctggaggcattggaagactc 1088



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                          
Query: 574  gtggaaatgatcccatggacgagagttgat 603
            ||||||||||| ||||||||||||||||||
Sbjct: 1145 gtggaaatgatgccatggacgagagttgat 1174



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 9   caagttaatgcctacataaatcg 31
           |||||||||||||||||||||||
Sbjct: 571 caagttaatgcctacataaatcg 593



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>gb|DQ196183.1|DQ196183S1 Triticum monococcum cultivar DV92 putative adhesion regulating
           protein gene, partial cds
          Length = 1348

 Score =  218 bits (110), Expect = 2e-53
 Identities = 119/122 (97%)
 Strand = Plus / Minus

                                                                       
Query: 107 cagagctgggaatttagttgatcagagcatgaccgctgatatggctggtgaagtgacttc 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cagagctgggaatttagttgatcagagcatgaccgctgatatggctggtgaagtgacttc 334

                                                                       
Query: 167 tgccgctggacctgtacgactggctgaccttcagagaatattgagctctatacagccatc 226
           |||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||
Sbjct: 333 tgccgctggacctgtacgactgtctgaccttcagagaatattgagttctatacaaccatc 274

             
Query: 227 tg 228
           ||
Sbjct: 273 tg 272



 Score =  135 bits (68), Expect = 2e-28
 Identities = 80/84 (95%)
 Strand = Plus / Minus

                                                                       
Query: 252 ggattgagactaggagacatcttgaagcctgatttgatattgccactaattgaaactttg 311
           |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct: 84  ggattgagactaggagacatcttgaaacctgaattgatattgcccctaattgaaactttg 25

                                   
Query: 312 cccattgaacagttggcatcacat 335
           ||||||| ||||||||||||||||
Sbjct: 24  cccattggacagttggcatcacat 1



 Score =  133 bits (67), Expect = 8e-28
 Identities = 70/71 (98%)
 Strand = Plus / Minus

                                                                        
Query: 39   gatggcgatgcaatttctattgaagcagaaatgtcacacgaagatacagctgatgatgac 98
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1216 gatggcgatgcaatttctattgaagcagaaatgtcacatgaagatacagctgatgatgac 1157

                       
Query: 99   atctcttccag 109
            |||||||||||
Sbjct: 1156 atctcttccag 1146



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                   
Query: 1    tatgccgccaagttaatgcctacataaatcggcccttgg 39
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 tatgccgccaagttaatgcctacataaatcggcccttgg 1283



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 228 gatgctacggcagatcctgatgctgg 253
           ||||||| ||||||||||||||||||
Sbjct: 185 gatgctatggcagatcctgatgctgg 160



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>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0030I14, complete sequence
          Length = 159035

 Score =  111 bits (56), Expect = 3e-21
 Identities = 104/120 (86%)
 Strand = Plus / Minus

                                                                         
Query: 107   cagagctgggaatttagttgatcagagcatgaccgctgatatggctggtgaagtgacttc 166
             ||||||||||||||||||||||||||||||||| |||||| | |||||||| ||||| ||
Sbjct: 47499 cagagctgggaatttagttgatcagagcatgactgctgatttagctggtgaggtgacatc 47440

                                                                         
Query: 167   tgccgctggacctgtacgactggctgaccttcagagaatattgagctctatacagccatc 226
             ||| ||||| || |||||  |||  ||||| ||||||||| ||||  |||||||||||||
Sbjct: 47439 tgctgctgggccagtacggttggaagacctgcagagaatactgagtgctatacagccatc 47380



 Score =  111 bits (56), Expect = 3e-21
 Identities = 77/84 (91%)
 Strand = Plus / Minus

                                                                         
Query: 262   taggagacatcttgaagcctgatttgatattgccactaattgaaactttgcccattgaac 321
             |||||||||||||||||||||||||| | || ||||| || |||||||||||||||||||
Sbjct: 47170 taggagacatcttgaagcctgatttggtgttaccactcatggaaactttgcccattgaac 47111

                                     
Query: 322   agttggcatcacatcttccggagg 345
             ||||||||||| ||||||| ||||
Sbjct: 47110 agttggcatcatatcttccagagg 47087



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                         
Query: 39    gatggcgatgcaatttctattgaagcagaaatgtcacacgaagatacagctgatgatgac 98
             ||||| || ||| ||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 47934 gatggtgaggcagtttctattgaagctgaaatgtcacatgaagacacagctgatgatgac 47875

                        
Query: 99    atctcttccag 109
             ||||| |||||
Sbjct: 47874 atctcctccag 47864



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 103/123 (83%)
 Strand = Plus / Minus

                                                                         
Query: 478   ataaattcacagttgcttcgttcctggaggcattggaagactctgtggcaaacgcttgta 537
             ||||||||||||| |||||||||||||||||  | |||||||| |||||||| ||||   
Sbjct: 46370 ataaattcacagtagcttcgttcctggaggctcttgaagactccgtggcaaaagcttcag 46311

                                                                         
Query: 538   cagatggaggcaatgattcaaagaccaagaaagatggtggaaatgatcccatggacgaga 597
              || ||||| ||| |||||| || || ||| ||  |||||||||||||||||||| ||||
Sbjct: 46310 gagctggagacaaggattcagagtcccagagaggcggtggaaatgatcccatggatgaga 46251

                
Query: 598   gtt 600
             |||
Sbjct: 46250 gtt 46248



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                   
Query: 351   tggactgctggtgatattcttgagctgctgcaaagtcctcctttgcgacagcaa 404
             ||||||||||||||||||||||| ||  ||||||||||||||||||| ||||||
Sbjct: 47000 tggactgctggtgatattcttgaactattgcaaagtcctcctttgcggcagcaa 46947



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                    
Query: 423   gtgctgcagactggccaaatagatcttgctcaatttggagtggaccctagtaaat 477
             ||||||| |||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct: 46836 gtgctgcggactgggcaaatagatctagcacaatttggagttgaccctagtaaat 46782



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 1     tatgccgccaagttaatgcctacataaa 28
             |||| |||||||||||||||||||||||
Sbjct: 48048 tatgtcgccaagttaatgcctacataaa 48021



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  111 bits (56), Expect = 3e-21
 Identities = 104/120 (86%)
 Strand = Plus / Minus

                                                                            
Query: 107      cagagctgggaatttagttgatcagagcatgaccgctgatatggctggtgaagtgacttc 166
                ||||||||||||||||||||||||||||||||| |||||| | |||||||| ||||| ||
Sbjct: 29399474 cagagctgggaatttagttgatcagagcatgactgctgatttagctggtgaggtgacatc 29399415

                                                                            
Query: 167      tgccgctggacctgtacgactggctgaccttcagagaatattgagctctatacagccatc 226
                ||| ||||| || |||||  |||  ||||| ||||||||| ||||  |||||||||||||
Sbjct: 29399414 tgctgctgggccagtacggttggaagacctgcagagaatactgagtgctatacagccatc 29399355



 Score =  111 bits (56), Expect = 3e-21
 Identities = 77/84 (91%)
 Strand = Plus / Minus

                                                                            
Query: 262      taggagacatcttgaagcctgatttgatattgccactaattgaaactttgcccattgaac 321
                |||||||||||||||||||||||||| | || ||||| || |||||||||||||||||||
Sbjct: 29399145 taggagacatcttgaagcctgatttggtgttaccactcatggaaactttgcccattgaac 29399086

                                        
Query: 322      agttggcatcacatcttccggagg 345
                ||||||||||| ||||||| ||||
Sbjct: 29399085 agttggcatcatatcttccagagg 29399062



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                            
Query: 39       gatggcgatgcaatttctattgaagcagaaatgtcacacgaagatacagctgatgatgac 98
                ||||| || ||| ||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 29399909 gatggtgaggcagtttctattgaagctgaaatgtcacatgaagacacagctgatgatgac 29399850

                           
Query: 99       atctcttccag 109
                ||||| |||||
Sbjct: 29399849 atctcctccag 29399839



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 103/123 (83%)
 Strand = Plus / Minus

                                                                            
Query: 478      ataaattcacagttgcttcgttcctggaggcattggaagactctgtggcaaacgcttgta 537
                ||||||||||||| |||||||||||||||||  | |||||||| |||||||| ||||   
Sbjct: 29398345 ataaattcacagtagcttcgttcctggaggctcttgaagactccgtggcaaaagcttcag 29398286

                                                                            
Query: 538      cagatggaggcaatgattcaaagaccaagaaagatggtggaaatgatcccatggacgaga 597
                 || ||||| ||| |||||| || || ||| ||  |||||||||||||||||||| ||||
Sbjct: 29398285 gagctggagacaaggattcagagtcccagagaggcggtggaaatgatcccatggatgaga 29398226

                   
Query: 598      gtt 600
                |||
Sbjct: 29398225 gtt 29398223



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                      
Query: 351      tggactgctggtgatattcttgagctgctgcaaagtcctcctttgcgacagcaa 404
                ||||||||||||||||||||||| ||  ||||||||||||||||||| ||||||
Sbjct: 29398975 tggactgctggtgatattcttgaactattgcaaagtcctcctttgcggcagcaa 29398922



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                       
Query: 423      gtgctgcagactggccaaatagatcttgctcaatttggagtggaccctagtaaat 477
                ||||||| |||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct: 29398811 gtgctgcggactgggcaaatagatctagcacaatttggagttgaccctagtaaat 29398757



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 1        tatgccgccaagttaatgcctacataaa 28
                |||| |||||||||||||||||||||||
Sbjct: 29400023 tatgtcgccaagttaatgcctacataaa 29399996



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>gb|AC148238.4| Medicago truncatula clone mth2-4a11, complete sequence
          Length = 98424

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 267   gacatcttgaagcctgatttgatattgcca 296
             ||||| |||||||||||| |||||||||||
Sbjct: 70402 gacattttgaagcctgatctgatattgcca 70431



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>gb|AC131079.11| Mus musculus chromosome 14, clone RP23-434L17, complete sequence
          Length = 203276

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 191   tgaccttcagagaatattgag 211
             |||||||||||||||||||||
Sbjct: 66592 tgaccttcagagaatattgag 66612



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>gb|AC146277.2| Pan troglodytes BAC clone CH251-17J20 from X, complete sequence
          Length = 160219

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 438   caaatagatcttgctcaatttggag 462
             |||||||||||| ||||||||||||
Sbjct: 90660 caaatagatctttctcaatttggag 90684



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>gb|AC146276.2| Pan troglodytes BAC clone CH251-149B14 from X, complete sequence
          Length = 180335

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 438    caaatagatcttgctcaatttggag 462
              |||||||||||| ||||||||||||
Sbjct: 107482 caaatagatctttctcaatttggag 107458



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>gb|AC144386.2| Pan troglodytes BAC clone CH251-313C12 from X, complete sequence
          Length = 202661

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 438    caaatagatcttgctcaatttggag 462
              |||||||||||| ||||||||||||
Sbjct: 202237 caaatagatctttctcaatttggag 202213



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>emb|Z70689.2|HSU19D8 Human DNA sequence from clone LL0XNC01-19D8 on chromosome X Contains
            the 5' end of the NXF2 gene for nuclear RNA export factor
            2, complete sequence
          Length = 33884

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 438  caaatagatcttgctcaatttggag 462
            |||||||||||| ||||||||||||
Sbjct: 6067 caaatagatctttctcaatttggag 6043



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>emb|AL590069.5| Human DNA sequence from clone RP11-353J17 on chromosome X, complete
              sequence
          Length = 158828

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 438    caaatagatcttgctcaatttggag 462
              |||||||||||| ||||||||||||
Sbjct: 129126 caaatagatctttctcaatttggag 129102



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>gb|AC132217.15| Homo sapiens chromosome 11, clone RP11-889I17, complete sequence
          Length = 170027

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 542    tggaggcaatgattcaaagac 562
              |||||||||||||||||||||
Sbjct: 145922 tggaggcaatgattcaaagac 145902



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>emb|AJ601384.1| Paracentrotus lividus mRNA for alpha-5 collagen (coll5alpha gene)
          Length = 8401

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 83   tacagctgatgatgacatctc 103
            |||||||||||||||||||||
Sbjct: 3352 tacagctgatgatgacatctc 3332



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>gb|AC151524.2| Medicago truncatula chromosome 7 BAC clone mth2-67a20, complete
             sequence
          Length = 99692

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 551   tgattcaaagaccaagaaag 570
             ||||||||||||||||||||
Sbjct: 11149 tgattcaaagaccaagaaag 11168



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>gb|AC154426.2| Mus musculus BAC clone RP24-199A21 from chromosome 14, complete
             sequence
          Length = 210568

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 472   gtaaatataaattcacagttgctt 495
             |||||||||||||||||| |||||
Sbjct: 43733 gtaaatataaattcacagctgctt 43710



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>gb|AC116781.9| Mus musculus chromosome 16, clone RP24-134G20, complete sequence
          Length = 166568

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    tctcttccagagctgggaat 119
              ||||||||||||||||||||
Sbjct: 165903 tctcttccagagctgggaat 165884



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>ref|XR_002961.1| PREDICTED: Mus musculus similar to ribosomal protein L6
           (LOC382872), mRNA
          Length = 1041

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 419 tcatgtgctgcagactggcc 438
           ||||||||||||||||||||
Sbjct: 861 tcatgtgctgcagactggcc 880



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>gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete sequence
          Length = 131563

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 551   tgattcaaagaccaagaaag 570
             ||||||||||||||||||||
Sbjct: 21759 tgattcaaagaccaagaaag 21740



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>emb|AL121931.10|HS1131C10 Human DNA sequence from clone RP5-1131C10 on chromosome 6q12-13,
             complete sequence
          Length = 133751

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 430   agactggccaaatagatctt 449
             ||||||||||||||||||||
Sbjct: 30092 agactggccaaatagatctt 30073



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>gb|AC013587.10| Homo sapiens chromosome 18, clone RP11-7L24, complete sequence
          Length = 128755

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 472   gtaaatataaattcacagtt 491
             ||||||||||||||||||||
Sbjct: 80148 gtaaatataaattcacagtt 80129



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>emb|BX571771.5| Zebrafish DNA sequence from clone CH211-160F8 in linkage group 21,
             complete sequence
          Length = 162245

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   gcagatcctgatgctggatt 256
             ||||||||||||||||||||
Sbjct: 66383 gcagatcctgatgctggatt 66364



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>gb|AC096769.3| Homo sapiens BAC clone RP11-734O19 from 4, complete sequence
          Length = 70806

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 473   taaatataaattcacagttgcttc 496
             |||||||||| |||||||||||||
Sbjct: 59710 taaatataaaatcacagttgcttc 59733



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>gb|AC163699.4| Gallus gallus BAC clone CH261-138A17 from chromosome unknown, complete
             sequence
          Length = 240555

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 405   ctggatgcttttactcatgt 424
             ||||||||||||||||||||
Sbjct: 39300 ctggatgcttttactcatgt 39281



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>gb|AC104830.4| Homo sapiens BAC clone RP11-811O14 from 2, complete sequence
          Length = 67709

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   tagttgatcagagcatgacc 140
             ||||||||||||||||||||
Sbjct: 39896 tagttgatcagagcatgacc 39915



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>gb|AC164654.3| Gallus gallus BAC clone CH261-5H7 from chromosome unknown, complete
              sequence
          Length = 250515

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 405    ctggatgcttttactcatgt 424
              ||||||||||||||||||||
Sbjct: 214138 ctggatgcttttactcatgt 214119



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>gb|AC154333.2| Mus musculus BAC clone RP24-496M21 from 14, complete sequence
          Length = 163565

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 419   tcatgtgctgcagactggcc 438
             ||||||||||||||||||||
Sbjct: 28669 tcatgtgctgcagactggcc 28650



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>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome
          Length = 1884661

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 316     ttgaacagttggcatcacatcttc 339
               |||| |||||||||||||||||||
Sbjct: 1354854 ttgaccagttggcatcacatcttc 1354877



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>emb|CT573047.6| Mouse DNA sequence from clone RP23-73L5 on chromosome 14, complete
              sequence
          Length = 211944

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 419    tcatgtgctgcagactggcc 438
              ||||||||||||||||||||
Sbjct: 101489 tcatgtgctgcagactggcc 101508



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>emb|AL672244.15| Mouse DNA sequence from clone RP23-43I8 on chromosome 16, complete
              sequence
          Length = 243114

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    tctcttccagagctgggaat 119
              ||||||||||||||||||||
Sbjct: 140943 tctcttccagagctgggaat 140962



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>emb|AL928712.8| Zebrafish DNA sequence from clone CH211-220O11 in linkage group 17,
              complete sequence
          Length = 137441

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    gactggctgaccttcagaga 203
              ||||||||||||||||||||
Sbjct: 101990 gactggctgaccttcagaga 101971



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>emb|AL626772.10| Mouse DNA sequence from clone RP23-90D4 on chromosome 4, complete
             sequence
          Length = 230614

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   agctgctgcaaagtcctcct 392
             ||||||||||||||||||||
Sbjct: 62861 agctgctgcaaagtcctcct 62842


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,319,711
Number of Sequences: 3902068
Number of extensions: 5319711
Number of successful extensions: 96801
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96679
Number of HSP's gapped (non-prelim): 112
length of query: 627
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 604
effective length of database: 17,143,297,704
effective search space: 10354551813216
effective search space used: 10354551813216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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