ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags10f09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_194082.1| Oryza sativa (japonica cultivar-group), mRNA 155 2e-34
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 155 2e-34
3gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genom... 155 2e-34
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
5dbj|AK102670.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 2e-34
6ref|XM_476541.1| Oryza sativa (japonica cultivar-group), mRNA 147 4e-32
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 147 4e-32
8dbj|AP004338.4| Oryza sativa (japonica cultivar-group) genomic D... 147 4e-32
9dbj|AP003742.3| Oryza sativa (japonica cultivar-group) genomic D... 147 4e-32
10gb|BT018380.1| Zea mays clone EL01N0307H04.d mRNA sequence 133 6e-28
11gb|DQ013804.1| Phyllostachys praecox RLK1 mRNA, partial cds 101 2e-18
12ref|XM_470602.1| Oryza sativa (japonica cultivar-group), predic... 76 1e-10
13gb|AC099732.2| Oryza sativa (japonica cultivar-group) chromosome... 76 1e-10
14dbj|AK121286.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
15gb|AY110099.1| Zea mays CL3491_1 mRNA sequence 64 4e-07
16gb|AY107551.1| Zea mays PCO090593 mRNA sequence 52 0.002
17gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome... 44 0.41
18gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 44 0.41
19gb|AF229441.2| Sinorhizobium fredii strain USDA257 Y4xI (y4xI), ... 44 0.41
20emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4,... 44 0.41
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
22dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
23emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.41
24gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome... 44 0.41
25gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete se... 42 1.6
26gb|AC132450.3| Mus musculus BAC clone RP23-187N8 from chromosome... 42 1.6
27gb|AC124926.7| Rattus norvegicus X BAC CH230-155H3 (Children's H... 42 1.6
28gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 42 1.6
29emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.6
30ref|XM_450172.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.4
31ref|NM_191805.1| Oryza sativa (japonica cultivar-group), predic... 40 6.4
32gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 6.4
33gb|DQ356948.1| Crocodilepox virus, complete genome 40 6.4
34gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 6.4
35ref|XM_848992.1| PREDICTED: Canis familiaris similar to prothymo... 40 6.4
36gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L... 40 6.4
37ref|XM_860979.1| PREDICTED: Canis familiaris hypothetical protei... 40 6.4
38emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 6.4
39ref|XM_570142.1| Cryptococcus neoformans var. neoformans JEC21 r... 40 6.4
40gb|AC135633.3| Mus musculus BAC clone RP24-84O13 from chromosome... 40 6.4
41emb|CR974448.6| Pig DNA sequence from clone CH242-250F12 on chro... 40 6.4
42gb|AC182460.2| Gallus gallus BAC clone CH261-132N3 from chromoso... 40 6.4
43gb|AC177806.2| Gallus gallus BAC clone CH261-13L12 from chromoso... 40 6.4
44dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
45dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
46dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
47dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
48dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
49dbj|AP005582.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
50dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
51dbj|AK105712.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
52emb|AL831739.10| Mouse DNA sequence from clone RP23-395O3 on chr... 40 6.4
53emb|AL133370.4|CNS01DUV Human chromosome 14 DNA sequence BAC C-2... 40 6.4
54emb|AL844209.6| Mouse DNA sequence from clone RP23-105M20 on chr... 40 6.4 
>ref|NM_194082.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3510

 Score =  155 bits (78), Expect = 2e-34
 Identities = 165/194 (85%)
 Strand = Plus / Plus

                                                                        
Query: 13   atgatgactggcccaagcaaggaacaagtgatgaagatcctggacccgaggctgtcgacc 72
            |||||||| | | ||| ||||||||||||||||||| |||||||||| ||||| || || 
Sbjct: 2740 atgatgaccgactcaaacaaggaacaagtgatgaaggtcctggacccaaggctctcaaca 2799

                                                                        
Query: 73   gtgccggtgcacgaggtgatgcacgtcttctacgtcgccttgctctgcaccgaggagcac 132
            || ||  | || ||||| |||||||||||||| ||||| ||||||||||  |||||||| 
Sbjct: 2800 gttccacttcatgaggtcatgcacgtcttctatgtcgctttgctctgcattgaggagcag 2859

                                                                        
Query: 133  agcgtgcagcgcccgacgatgcgggaggttgtgcagatcctgagcgagctcccaaagcca 192
            ||||||||||| || || |||||||||||||| |||||||| |||||||| ||||||| |
Sbjct: 2860 agcgtgcagcgtccaacaatgcgggaggttgtacagatcctcagcgagcttccaaagcta 2919

                          
Query: 193  gctgccagccaagg 206
            ||| |||| |||||
Sbjct: 2920 gctcccaggcaagg 2933



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                        
Query: 299  atgcaaaagatcatcagcagcagcacacaagctcggagtcgtcgcctcctcctgatctca 358
            |||| |||||||| ||||||||||| ||||  || |||||  |  | |||||||||||||
Sbjct: 3020 atgcgaaagatcaacagcagcagcaaacaaattcagagtcaactacacctcctgatctca 3079

                   
Query: 359  tcagcat 365
            |||||||
Sbjct: 3080 tcagcat 3086
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  155 bits (78), Expect = 2e-34
 Identities = 165/194 (85%)
 Strand = Plus / Plus

                                                                            
Query: 13       atgatgactggcccaagcaaggaacaagtgatgaagatcctggacccgaggctgtcgacc 72
                |||||||| | | ||| ||||||||||||||||||| |||||||||| ||||| || || 
Sbjct: 31777794 atgatgaccgactcaaacaaggaacaagtgatgaaggtcctggacccaaggctctcaaca 31777853

                                                                            
Query: 73       gtgccggtgcacgaggtgatgcacgtcttctacgtcgccttgctctgcaccgaggagcac 132
                || ||  | || ||||| |||||||||||||| ||||| ||||||||||  |||||||| 
Sbjct: 31777854 gttccacttcatgaggtcatgcacgtcttctatgtcgctttgctctgcattgaggagcag 31777913

                                                                            
Query: 133      agcgtgcagcgcccgacgatgcgggaggttgtgcagatcctgagcgagctcccaaagcca 192
                ||||||||||| || || |||||||||||||| |||||||| |||||||| ||||||| |
Sbjct: 31777914 agcgtgcagcgtccaacaatgcgggaggttgtacagatcctcagcgagcttccaaagcta 31777973

                              
Query: 193      gctgccagccaagg 206
                ||| |||| |||||
Sbjct: 31777974 gctcccaggcaagg 31777987



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/90 (85%)
 Strand = Plus / Minus

                                                                           
Query: 82      cacgaggtgatgcacgtcttctacgtcgccttgctctgcaccgaggagcacagcgtgcag 141
               |||||| ||| ||||||||||||||||||| |||| |||  ||  ||||| |||||  ||
Sbjct: 6773392 cacgagctgacgcacgtcttctacgtcgccatgctgtgcgtcgccgagcagagcgtcgag 6773333

                                             
Query: 142     cgcccgacgatgcgggaggttgtgcagatc 171
               || ||||||||||||||||| |||||||||
Sbjct: 6773332 cggccgacgatgcgggaggtcgtgcagatc 6773303



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                            
Query: 299      atgcaaaagatcatcagcagcagcacacaagctcggagtcgtcgcctcctcctgatctca 358
                |||| |||||||| ||||||||||| ||||  || |||||  |  | |||||||||||||
Sbjct: 31778074 atgcgaaagatcaacagcagcagcaaacaaattcagagtcaactacacctcctgatctca 31778133

                       
Query: 359      tcagcat 365
                |||||||
Sbjct: 31778134 tcagcat 31778140
to top
>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete
              sequence
          Length = 134496

 Score =  155 bits (78), Expect = 2e-34
 Identities = 165/194 (85%)
 Strand = Plus / Plus

                                                                          
Query: 13     atgatgactggcccaagcaaggaacaagtgatgaagatcctggacccgaggctgtcgacc 72
              |||||||| | | ||| ||||||||||||||||||| |||||||||| ||||| || || 
Sbjct: 103020 atgatgaccgactcaaacaaggaacaagtgatgaaggtcctggacccaaggctctcaaca 103079

                                                                          
Query: 73     gtgccggtgcacgaggtgatgcacgtcttctacgtcgccttgctctgcaccgaggagcac 132
              || ||  | || ||||| |||||||||||||| ||||| ||||||||||  |||||||| 
Sbjct: 103080 gttccacttcatgaggtcatgcacgtcttctatgtcgctttgctctgcattgaggagcag 103139

                                                                          
Query: 133    agcgtgcagcgcccgacgatgcgggaggttgtgcagatcctgagcgagctcccaaagcca 192
              ||||||||||| || || |||||||||||||| |||||||| |||||||| ||||||| |
Sbjct: 103140 agcgtgcagcgtccaacaatgcgggaggttgtacagatcctcagcgagcttccaaagcta 103199

                            
Query: 193    gctgccagccaagg 206
              ||| |||| |||||
Sbjct: 103200 gctcccaggcaagg 103213



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                          
Query: 299    atgcaaaagatcatcagcagcagcacacaagctcggagtcgtcgcctcctcctgatctca 358
              |||| |||||||| ||||||||||| ||||  || |||||  |  | |||||||||||||
Sbjct: 103300 atgcgaaagatcaacagcagcagcaaacaaattcagagtcaactacacctcctgatctca 103359

                     
Query: 359    tcagcat 365
              |||||||
Sbjct: 103360 tcagcat 103366
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  155 bits (78), Expect = 2e-34
 Identities = 165/194 (85%)
 Strand = Plus / Plus

                                                                            
Query: 13       atgatgactggcccaagcaaggaacaagtgatgaagatcctggacccgaggctgtcgacc 72
                |||||||| | | ||| ||||||||||||||||||| |||||||||| ||||| || || 
Sbjct: 31868310 atgatgaccgactcaaacaaggaacaagtgatgaaggtcctggacccaaggctctcaaca 31868369

                                                                            
Query: 73       gtgccggtgcacgaggtgatgcacgtcttctacgtcgccttgctctgcaccgaggagcac 132
                || ||  | || ||||| |||||||||||||| ||||| ||||||||||  |||||||| 
Sbjct: 31868370 gttccacttcatgaggtcatgcacgtcttctatgtcgctttgctctgcattgaggagcag 31868429

                                                                            
Query: 133      agcgtgcagcgcccgacgatgcgggaggttgtgcagatcctgagcgagctcccaaagcca 192
                ||||||||||| || || |||||||||||||| |||||||| |||||||| ||||||| |
Sbjct: 31868430 agcgtgcagcgtccaacaatgcgggaggttgtacagatcctcagcgagcttccaaagcta 31868489

                              
Query: 193      gctgccagccaagg 206
                ||| |||| |||||
Sbjct: 31868490 gctcccaggcaagg 31868503



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/90 (85%)
 Strand = Plus / Minus

                                                                           
Query: 82      cacgaggtgatgcacgtcttctacgtcgccttgctctgcaccgaggagcacagcgtgcag 141
               |||||| ||| ||||||||||||||||||| |||| |||  ||  ||||| |||||  ||
Sbjct: 6772605 cacgagctgacgcacgtcttctacgtcgccatgctgtgcgtcgccgagcagagcgtcgag 6772546

                                             
Query: 142     cgcccgacgatgcgggaggttgtgcagatc 171
               || ||||||||||||||||| |||||||||
Sbjct: 6772545 cggccgacgatgcgggaggtcgtgcagatc 6772516



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                            
Query: 299      atgcaaaagatcatcagcagcagcacacaagctcggagtcgtcgcctcctcctgatctca 358
                |||| |||||||| ||||||||||| ||||  || |||||  |  | |||||||||||||
Sbjct: 31868590 atgcgaaagatcaacagcagcagcaaacaaattcagagtcaactacacctcctgatctca 31868649

                       
Query: 359      tcagcat 365
                |||||||
Sbjct: 31868650 tcagcat 31868656
to top
>dbj|AK102670.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101P17, full
            insert sequence
          Length = 3031

 Score =  155 bits (78), Expect = 2e-34
 Identities = 165/194 (85%)
 Strand = Plus / Plus

                                                                        
Query: 13   atgatgactggcccaagcaaggaacaagtgatgaagatcctggacccgaggctgtcgacc 72
            |||||||| | | ||| ||||||||||||||||||| |||||||||| ||||| || || 
Sbjct: 2310 atgatgaccgactcaaacaaggaacaagtgatgaaggtcctggacccaaggctctcaaca 2369

                                                                        
Query: 73   gtgccggtgcacgaggtgatgcacgtcttctacgtcgccttgctctgcaccgaggagcac 132
            || ||  | || ||||| |||||||||||||| ||||| ||||||||||  |||||||| 
Sbjct: 2370 gttccacttcatgaggtcatgcacgtcttctatgtcgctttgctctgcattgaggagcag 2429

                                                                        
Query: 133  agcgtgcagcgcccgacgatgcgggaggttgtgcagatcctgagcgagctcccaaagcca 192
            ||||||||||| || || |||||||||||||| |||||||| |||||||| ||||||| |
Sbjct: 2430 agcgtgcagcgtccaacaatgcgggaggttgtacagatcctcagcgagcttccaaagcta 2489

                          
Query: 193  gctgccagccaagg 206
            ||| |||| |||||
Sbjct: 2490 gctcccaggcaagg 2503



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                        
Query: 299  atgcaaaagatcatcagcagcagcacacaagctcggagtcgtcgcctcctcctgatctca 358
            |||| |||||||| ||||||||||| ||||  || |||||  |  | |||||||||||||
Sbjct: 2590 atgcgaaagatcaacagcagcagcaaacaaattcagagtcaactacacctcctgatctca 2649

                   
Query: 359  tcagcat 365
            |||||||
Sbjct: 2650 tcagcat 2656
to top
>ref|XM_476541.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3072

 Score =  147 bits (74), Expect = 4e-32
 Identities = 140/162 (86%)
 Strand = Plus / Plus

                                                                        
Query: 30   caaggaacaagtgatgaagatcctggacccgaggctgtcgaccgtgccggtgcacgaggt 89
            ||||||||| ||||| |||||| ||||||| ||||| || || |||||||| ||||||||
Sbjct: 2754 caaggaacatgtgatcaagatcttggaccctaggctctcaactgtgccggtccacgaggt 2813

                                                                        
Query: 90   gatgcacgtcttctacgtcgccttgctctgcaccgaggagcacagcgtgcagcgcccgac 149
             |||||||||||||||||||| ||||| |||  ||||||||| ||||||||||| |||||
Sbjct: 2814 catgcacgtcttctacgtcgcattgctttgcgtcgaggagcagagcgtgcagcgaccgac 2873

                                                      
Query: 150  gatgcgggaggttgtgcagatcctgagcgagctcccaaagcc 191
             ||| ||||||| ||||||||||| || ||||| || |||||
Sbjct: 2874 aatgagggaggtggtgcagatcctcagtgagcttcccaagcc 2915
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  147 bits (74), Expect = 4e-32
 Identities = 140/162 (86%)
 Strand = Plus / Minus

                                                                           
Query: 30      caaggaacaagtgatgaagatcctggacccgaggctgtcgaccgtgccggtgcacgaggt 89
               ||||||||| ||||| |||||| ||||||| ||||| || || |||||||| ||||||||
Sbjct: 1845212 caaggaacatgtgatcaagatcttggaccctaggctctcaactgtgccggtccacgaggt 1845153

                                                                           
Query: 90      gatgcacgtcttctacgtcgccttgctctgcaccgaggagcacagcgtgcagcgcccgac 149
                |||||||||||||||||||| ||||| |||  ||||||||| ||||||||||| |||||
Sbjct: 1845152 catgcacgtcttctacgtcgcattgctttgcgtcgaggagcagagcgtgcagcgaccgac 1845093

                                                         
Query: 150     gatgcgggaggttgtgcagatcctgagcgagctcccaaagcc 191
                ||| ||||||| ||||||||||| || ||||| || |||||
Sbjct: 1845092 aatgagggaggtggtgcagatcctcagtgagcttcccaagcc 1845051
to top
>dbj|AP004338.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0507H12
          Length = 143030

 Score =  147 bits (74), Expect = 4e-32
 Identities = 140/162 (86%)
 Strand = Plus / Minus

                                                                         
Query: 30    caaggaacaagtgatgaagatcctggacccgaggctgtcgaccgtgccggtgcacgaggt 89
             ||||||||| ||||| |||||| ||||||| ||||| || || |||||||| ||||||||
Sbjct: 49791 caaggaacatgtgatcaagatcttggaccctaggctctcaactgtgccggtccacgaggt 49732

                                                                         
Query: 90    gatgcacgtcttctacgtcgccttgctctgcaccgaggagcacagcgtgcagcgcccgac 149
              |||||||||||||||||||| ||||| |||  ||||||||| ||||||||||| |||||
Sbjct: 49731 catgcacgtcttctacgtcgcattgctttgcgtcgaggagcagagcgtgcagcgaccgac 49672

                                                       
Query: 150   gatgcgggaggttgtgcagatcctgagcgagctcccaaagcc 191
              ||| ||||||| ||||||||||| || ||||| || |||||
Sbjct: 49671 aatgagggaggtggtgcagatcctcagtgagcttcccaagcc 49630
to top
>dbj|AP003742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1118_D07
          Length = 131449

 Score =  147 bits (74), Expect = 4e-32
 Identities = 140/162 (86%)
 Strand = Plus / Minus

                                                                         
Query: 30    caaggaacaagtgatgaagatcctggacccgaggctgtcgaccgtgccggtgcacgaggt 89
             ||||||||| ||||| |||||| ||||||| ||||| || || |||||||| ||||||||
Sbjct: 97431 caaggaacatgtgatcaagatcttggaccctaggctctcaactgtgccggtccacgaggt 97372

                                                                         
Query: 90    gatgcacgtcttctacgtcgccttgctctgcaccgaggagcacagcgtgcagcgcccgac 149
              |||||||||||||||||||| ||||| |||  ||||||||| ||||||||||| |||||
Sbjct: 97371 catgcacgtcttctacgtcgcattgctttgcgtcgaggagcagagcgtgcagcgaccgac 97312

                                                       
Query: 150   gatgcgggaggttgtgcagatcctgagcgagctcccaaagcc 191
              ||| ||||||| ||||||||||| || ||||| || |||||
Sbjct: 97311 aatgagggaggtggtgcagatcctcagtgagcttcccaagcc 97270
to top
>gb|BT018380.1| Zea mays clone EL01N0307H04.d mRNA sequence
          Length = 1381

 Score =  133 bits (67), Expect = 6e-28
 Identities = 142/167 (85%)
 Strand = Plus / Plus

                                                                       
Query: 28  agcaaggaacaagtgatgaagatcctggacccgaggctgtcgaccgtgccggtgcacgag 87
           |||||||| || ||| | ||| || ||||||| |||||||||| ||||||||||||||||
Sbjct: 586 agcaaggagcaggtggtcaaggtcatggaccccaggctgtcgagcgtgccggtgcacgag 645

                                                                       
Query: 88  gtgatgcacgtcttctacgtcgccttgctctgcaccgaggagcacagcgtgcagcgcccg 147
           |||  |||||| |||| ||||||  | ||||||   |||||||| |||||||||||||| 
Sbjct: 646 gtggcgcacgtgttctgcgtcgcgctcctctgcgtggaggagcagagcgtgcagcgcccc 705

                                                          
Query: 148 acgatgcgggaggttgtgcagatcctgagcgagctcccaaagccagc 194
           |||||||||||||| |||||||| ||  |||||||||| ||||||||
Sbjct: 706 acgatgcgggaggtggtgcagatgctcggcgagctccccaagccagc 752



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 ctgatctcatcagcatctga 369
           ||||||||||||||||||||
Sbjct: 917 ctgatctcatcagcatctga 936
to top
>gb|DQ013804.1| Phyllostachys praecox RLK1 mRNA, partial cds
          Length = 2776

 Score =  101 bits (51), Expect = 2e-18
 Identities = 120/143 (83%)
 Strand = Plus / Plus

                                                                        
Query: 40   gtgatgaagatcctggacccgaggctgtcgaccgtgccggtgcacgaggtgatgcacgtc 99
            ||||| || ||| ||||||| ||||| || || || |||||||||||||| |||||||||
Sbjct: 2101 gtgatcaaaatcttggaccccaggctatcaactgttccggtgcacgaggtaatgcacgtc 2160

                                                                        
Query: 100  ttctacgtcgccttgctctgcaccgaggagcacagcgtgcagcgcccgacgatgcgggag 159
            ||||| ||||||||||| ||    |||||||| ||||||||||| || || |||||||||
Sbjct: 2161 ttctatgtcgccttgctttgtgttgaggagcagagcgtgcagcgacctacaatgcgggag 2220

                                   
Query: 160  gttgtgcagatcctgagcgagct 182
            || ||||| ||||| || |||||
Sbjct: 2221 gtggtgcaaatcctcagtgagct 2243



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                        
Query: 326  caagctcggagtcgtcgcctcctcctgatctcatcagcatctga 369
            |||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 2372 caagctcgcagtcttcgcctcctcctgatctcatcagcatctga 2415
to top
>ref|XM_470602.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3006

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/90 (85%)
 Strand = Plus / Plus

                                                                        
Query: 82   cacgaggtgatgcacgtcttctacgtcgccttgctctgcaccgaggagcacagcgtgcag 141
            |||||| ||| ||||||||||||||||||| |||| |||  ||  ||||| |||||  ||
Sbjct: 2770 cacgagctgacgcacgtcttctacgtcgccatgctgtgcgtcgccgagcagagcgtcgag 2829

                                          
Query: 142  cgcccgacgatgcgggaggttgtgcagatc 171
            || ||||||||||||||||| |||||||||
Sbjct: 2830 cggccgacgatgcgggaggtcgtgcagatc 2859
to top
>gb|AC099732.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1203D03,
             complete sequence
          Length = 82352

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 77/90 (85%)
 Strand = Plus / Plus

                                                                         
Query: 82    cacgaggtgatgcacgtcttctacgtcgccttgctctgcaccgaggagcacagcgtgcag 141
             |||||| ||| ||||||||||||||||||| |||| |||  ||  ||||| |||||  ||
Sbjct: 51353 cacgagctgacgcacgtcttctacgtcgccatgctgtgcgtcgccgagcagagcgtcgag 51412

                                           
Query: 142   cgcccgacgatgcgggaggttgtgcagatc 171
             || ||||||||||||||||| |||||||||
Sbjct: 51413 cggccgacgatgcgggaggtcgtgcagatc 51442
to top
>dbj|AK121286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108P09, full
            insert sequence
          Length = 3313

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                        
Query: 88   gtgatgcacgtcttctacgtcgccttgctctgcaccgaggagcacagcgtgcagcgcccg 147
            |||| ||||||||||||||||||| |||| |||  ||  ||||| |||||  |||| |||
Sbjct: 2827 gtgacgcacgtcttctacgtcgccatgctgtgcgtcgccgagcagagcgtcgagcggccg 2886

                                    
Query: 148  acgatgcgggaggttgtgcagatc 171
            |||||||||||||| |||||||||
Sbjct: 2887 acgatgcgggaggtcgtgcagatc 2910
to top
>gb|AY110099.1| Zea mays CL3491_1 mRNA sequence
          Length = 736

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                       
Query: 145 ccgacgatgcgggaggttgtgcagatcctgagcgagctcccaaa 188
           ||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct: 730 ccgacgatgagggaggtggtgcagatcctgagcgagcttccaaa 687
to top
>gb|AY107551.1| Zea mays PCO090593 mRNA sequence
          Length = 798

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 66/78 (84%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                       
Query: 94  cacgtcttctacgtcgccttgctctgcaccgaggagcacagcg-tgcagcgcccgacgat 152
           |||||||||||||||||| |||| |||   | |||||| |||| || ||||||| |||||
Sbjct: 295 cacgtcttctacgtcgccatgctgtgcgtggcggagcagagcgttggagcgccccacgat 354

                             
Query: 153 gcgggaggttgtgcagat 170
           ||| ||||| ||||||||
Sbjct: 355 gcgcgaggtcgtgcagat 372
to top
>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0030I14,
              complete sequence
          Length = 159035

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                            
Query: 125    aggagcacagcgtgcagcgcccgacgatgcgggaggttgtgcagat 170
              |||||||||||||  ||||||| || ||||| ||||| ||||||||
Sbjct: 105605 aggagcacagcgtcgagcgccccaccatgcgcgaggtcgtgcagat 105560
to top
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 135    cgtgcagcgcccgacgatgcgg 156
              ||||||||||||||||||||||
Sbjct: 811142 cgtgcagcgcccgacgatgcgg 811163
to top
>gb|AF229441.2| Sinorhizobium fredii strain USDA257 Y4xI (y4xI), Y4xJ (y4xJ), Y4xK
            (y4xK), Y4xL (y4xL), Y4xM (y4xM), Y4xN (y4xN), Y4xO
            (y4xO), Y4xP (y4xP), Y4yA (y4yA), Y4yB (y4yB), nodulation
            protein NolX (nolX), NolW (nolW), NolB (nolB), NolT
            (nolT), NolU (nolU), NolV (nolV), Y4yI (y4yI), Y4yJ
            (y4yJ), Y4yK (y4yK), Y4yL (y4yL), Y4yM (y4yM), Y4yN
            (y4yN), Y4yO (y4yO), Y4yP (y4yP), Y4yQ (y4yQ), and Y4yR
            (y4yR) genes, complete cds
          Length = 31230

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 135  cgtgcagcgcccgacgatgcgg 156
            ||||||||||||||||||||||
Sbjct: 3945 cgtgcagcgcccgacgatgcgg 3966
to top
>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03,
              complete sequence
          Length = 179798

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 207    tgatggagaggaagagcttcct 228
              ||||||||||||||||||||||
Sbjct: 111164 tgatggagaggaagagcttcct 111185
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 207      tgatggagaggaagagcttcct 228
                ||||||||||||||||||||||
Sbjct: 30843643 tgatggagaggaagagcttcct 30843664
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                              
Query: 125      aggagcacagcgtgcagcgcccgacgatgcgggaggttgtgcagat 170
                |||||||||||||  ||||||| || ||||| ||||| ||||||||
Sbjct: 29457580 aggagcacagcgtcgagcgccccaccatgcgcgaggtcgtgcagat 29457535
to top
>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete
             sequence
          Length = 134586

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 207   tgatggagaggaagagcttcct 228
             ||||||||||||||||||||||
Sbjct: 20893 tgatggagaggaagagcttcct 20914
to top
>gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0086G17, complete sequence
          Length = 134631

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                           
Query: 125   aggagcacagcgtgcagcgcccgacgatgcgggaggttgtgcagat 170
             |||||||||||||  ||||||| || ||||| ||||| ||||||||
Sbjct: 41850 aggagcacagcgtcgagcgccccaccatgcgcgaggtcgtgcagat 41805
to top
>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence
          Length = 285444

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 207   tgatggagaggaagagcttcc 227
             |||||||||||||||||||||
Sbjct: 70186 tgatggagaggaagagcttcc 70166
to top
>gb|AC132450.3| Mus musculus BAC clone RP23-187N8 from chromosome 18, complete sequence
          Length = 201282

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 303   aaaagatcatcagcagcagca 323
             |||||||||||||||||||||
Sbjct: 60451 aaaagatcatcagcagcagca 60471
to top
>gb|AC124926.7| Rattus norvegicus X BAC CH230-155H3 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 217309

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 183   cccaaagccagctgccagcca 203
             |||||||||||||||||||||
Sbjct: 70579 cccaaagccagctgccagcca 70559
to top
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 132    cagcgtgcagcgcccgacgat 152
              |||||||||||||||||||||
Sbjct: 516515 cagcgtgcagcgcccgacgat 516495
to top
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 72      cgtgccggtgcacgaggtgatgcac 96
               ||||| |||||||||||||||||||
Sbjct: 2702344 cgtgctggtgcacgaggtgatgcac 2702368
to top
>ref|XM_450172.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 555

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 304 aaagatcatcagcagcagca 323
           ||||||||||||||||||||
Sbjct: 310 aaagatcatcagcagcagca 291
to top
>ref|NM_191805.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1467

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 57  cccgaggctgtcgaccgtgc 76
           ||||||||||||||||||||
Sbjct: 378 cccgaggctgtcgaccgtgc 359
to top
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
               sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 258     tcctgctccaaccagttcctctactgaa 285
               ||||||||| |||| |||||||||||||
Sbjct: 1492657 tcctgctcccaccacttcctctactgaa 1492630
to top
>gb|DQ356948.1| Crocodilepox virus, complete genome
          Length = 190054

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   ccgaggagcacagcgtgcag 141
             ||||||||||||||||||||
Sbjct: 51259 ccgaggagcacagcgtgcag 51240
to top
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 304     aaagatcatcagcagcagca 323
               ||||||||||||||||||||
Sbjct: 3537013 aaagatcatcagcagcagca 3536994
to top
>ref|XM_848992.1| PREDICTED: Canis familiaris similar to prothymosin, alpha (gene
           sequence 28) (LOC611335), mRNA
          Length = 1560

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 203 aaggtgatggagaggaagag 222
           ||||||||||||||||||||
Sbjct: 716 aaggtgatggagaggaagag 735
to top
>gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L1) gene, complete cds
          Length = 660392

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 179    agctcccaaagccagctgccagcc 202
              ||||||||||| ||||||||||||
Sbjct: 257876 agctcccaaaggcagctgccagcc 257853
to top
>ref|XM_860979.1| PREDICTED: Canis familiaris hypothetical protein LOC610128
           (LOC610128), mRNA
          Length = 1220

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 203 aaggtgatggagaggaagag 222
           ||||||||||||||||||||
Sbjct: 382 aaggtgatggagaggaagag 401
to top
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 305     aagatcatcagcagcagcac 324
               ||||||||||||||||||||
Sbjct: 2360906 aagatcatcagcagcagcac 2360925
to top
>ref|XM_570142.1| Cryptococcus neoformans var. neoformans JEC21 rRNA
           processing-related protein (CND05510) partial mRNA
          Length = 1300

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 258 tcctgctccaaccagttcctctactgaa 285
           ||||||||| |||| |||||||||||||
Sbjct: 909 tcctgctcccaccacttcctctactgaa 936
to top
>gb|AC135633.3| Mus musculus BAC clone RP24-84O13 from chromosome 19, complete sequence
          Length = 185138

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    ccaaccctcctgctccaacc 270
              ||||||||||||||||||||
Sbjct: 134872 ccaaccctcctgctccaacc 134853
to top
>emb|CR974448.6| Pig DNA sequence from clone CH242-250F12 on chromosome 17, complete
             sequence
          Length = 57884

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   ggtgatggagaggaagagct 224
             ||||||||||||||||||||
Sbjct: 49029 ggtgatggagaggaagagct 49048
to top
>gb|AC182460.2| Gallus gallus BAC clone CH261-132N3 from chromosome ul, complete sequence
          Length = 212965

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    catcagcagcagcacacaag 329
              ||||||||||||||||||||
Sbjct: 161742 catcagcagcagcacacaag 161723
to top
>gb|AC177806.2| Gallus gallus BAC clone CH261-13L12 from chromosome ul, complete
             sequence
          Length = 250495

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   catcagcagcagcacacaag 329
             ||||||||||||||||||||
Sbjct: 90963 catcagcagcagcacacaag 90944
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 304     aaagatcatcagcagcagca 323
               ||||||||||||||||||||
Sbjct: 2594067 aaagatcatcagcagcagca 2594048
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 302      caaaagatcatcagcagcagcacacaagctcg 333
                |||||||||| | ||| |||||||||||||||
Sbjct: 23538160 caaaagatcaacggcaacagcacacaagctcg 23538129
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 57       cccgaggctgtcgaccgtgc 76
                ||||||||||||||||||||
Sbjct: 30052915 cccgaggctgtcgaccgtgc 30052896
to top
>dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0690B02
          Length = 153116

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    cccgaggctgtcgaccgtgc 76
             ||||||||||||||||||||
Sbjct: 48905 cccgaggctgtcgaccgtgc 48886
to top
>dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0406E03
          Length = 201069

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    aaagatcatcagcagcagca 323
              ||||||||||||||||||||
Sbjct: 180657 aaagatcatcagcagcagca 180638
to top
>dbj|AP005582.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0006E02
          Length = 141782

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   aaagatcatcagcagcagca 323
             ||||||||||||||||||||
Sbjct: 39345 aaagatcatcagcagcagca 39326
to top
>dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0481H08
          Length = 146841

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 302   caaaagatcatcagcagcagcacacaagctcg 333
             |||||||||| | ||| |||||||||||||||
Sbjct: 19124 caaaagatcaacggcaacagcacacaagctcg 19093
to top
>dbj|AK105712.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E11, full
           insert sequence
          Length = 1607

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 57  cccgaggctgtcgaccgtgc 76
           ||||||||||||||||||||
Sbjct: 396 cccgaggctgtcgaccgtgc 377
to top
>emb|AL831739.10| Mouse DNA sequence from clone RP23-395O3 on chromosome 4, complete
             sequence
          Length = 121869

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 309   tcatcagcagcagcacacaagctc 332
             ||||||||| ||||||||||||||
Sbjct: 43252 tcatcagcaacagcacacaagctc 43275
to top
>emb|AL133370.4|CNS01DUV Human chromosome 14 DNA sequence BAC C-2566J3 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 155822

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 179   agctcccaaagccagctgccagcc 202
             ||||||||||| ||||||||||||
Sbjct: 53375 agctcccaaaggcagctgccagcc 53398
to top
>emb|AL844209.6| Mouse DNA sequence from clone RP23-105M20 on chromosome 2, complete
              sequence
          Length = 200361

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    aaggtgatggagaggaagag 222
              ||||||||||||||||||||
Sbjct: 119894 aaggtgatggagaggaagag 119875


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,350,927
Number of Sequences: 3902068
Number of extensions: 4350927
Number of successful extensions: 88765
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 88146
Number of HSP's gapped (non-prelim): 609
length of query: 477
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 455
effective length of database: 17,147,199,772
effective search space: 7801975896260
effective search space used: 7801975896260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top