ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags10f01 |
|---|---|
| Clone Library Name | barley_pub |
>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding| protein) (NRE-binding protein) (DBP-5) (Bax antagonist selected in saccharomyces 1) (BASS1) Length = 2426 Score = 34.7 bits (78), Expect = 0.25 Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = +3 Query: 420 RRNDDQSPVRRSDERSPVRRNDERSPVRRNDER-SPGSRSP 539 RR+ SPVR R+P+RR RSP+RR R S RSP Sbjct: 2007 RRSFSISPVRLRRSRTPLRRRFSRSPIRRKRSRSSERGRSP 2047 Score = 33.9 bits (76), Expect = 0.43 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +3 Query: 411 SPARRNDDQSPVRR-SDERSPVRRNDERSPVRRNDERSPGSRSPST*AE 554 +P+RR +S VRR S SPVR R+P+RR RSP R S +E Sbjct: 1994 TPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIRRKRSRSSE 2042 Score = 30.0 bits (66), Expect = 6.2 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +3 Query: 411 SPARRNDDQSPVRRSDERSPVRRNDERSPVR 503 SP R ++P+RR RSP+RR RS R Sbjct: 2013 SPVRLRRSRTPLRRRFSRSPIRRKRSRSSER 2043 Score = 29.6 bits (65), Expect = 8.0 Identities = 21/44 (47%), Positives = 30/44 (68%) Frame = +3 Query: 411 SPARRNDDQSPVRRSDERSPVRRNDERSPVRRNDERSPGSRSPS 542 SP+RR+ ++P RRS R+P RR+ R+P RR+ S SR+PS Sbjct: 1952 SPSRRS--RTPSRRS--RTPSRRS--RTPSRRSRTPSRRSRTPS 1989
>SON_MOUSE (Q9QX47) SON protein| Length = 2404 Score = 34.7 bits (78), Expect = 0.25 Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = +3 Query: 420 RRNDDQSPVRRSDERSPVRRNDERSPVRRNDER-SPGSRSP 539 RR+ SPVR R+P+RR RSP+RR R S RSP Sbjct: 1985 RRSFSISPVRLRRSRTPLRRRFSRSPIRRKRSRSSERGRSP 2025 Score = 34.3 bits (77), Expect = 0.33 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +3 Query: 411 SPARRNDDQSPVRR-SDERSPVRRNDERSPVRRNDERSPGSRSPST*AE 554 +P+RR +S VRR S SPVR R+P+RR RSP R S +E Sbjct: 1972 TPSRRRRSRSAVRRRSFSISPVRLRRSRTPLRRRFSRSPIRRKRSRSSE 2020 Score = 30.0 bits (66), Expect = 6.2 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +3 Query: 411 SPARRNDDQSPVRRSDERSPVRRNDERSPVR 503 SP R ++P+RR RSP+RR RS R Sbjct: 1991 SPVRLRRSRTPLRRRFSRSPIRRKRSRSSER 2021 Score = 29.6 bits (65), Expect = 8.0 Identities = 21/44 (47%), Positives = 30/44 (68%) Frame = +3 Query: 411 SPARRNDDQSPVRRSDERSPVRRNDERSPVRRNDERSPGSRSPS 542 SP+RR+ ++P RRS R+P RR+ R+P RR+ S SR+PS Sbjct: 1937 SPSRRS--RTPSRRS--RTPSRRS--RTPSRRSRTPSRRSRTPS 1974
>TMPSD_MOUSE (Q5U405) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic| serine protease) (Membrane-type mosaic serine protease) Length = 543 Score = 33.1 bits (74), Expect = 0.73 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +3 Query: 411 SPARRNDDQSPVRRSDERSPVRRNDERSPVRRNDERSPGSRSPS 542 SPAR SP R S R+P + + R+P + + R+P SP+ Sbjct: 10 SPARTPPQASPARTSPARAPPQASPARTPPQASPARTPPQASPA 53 Score = 32.7 bits (73), Expect = 0.95 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = +3 Query: 405 EGSPARRNDDQSPVRRSDERSPVRRND-ERSPVRRNDERSPGSRSPS 542 + SPAR SP R + SP R + SP R + R+P SRS S Sbjct: 31 QASPARTPPQASPARTPPQASPARAPPPQASPARASPARAPPSRSSS 77
>CSP_PLAVB (P08677) Circumsporozoite protein precursor (CS)| Length = 378 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/42 (38%), Positives = 27/42 (64%) Frame = -2 Query: 535 LREPGDRSSLRLTGDRSSLRLTGDRSSLRLTGDWSSLRLAGD 410 L++PGDR+ + GDR+ + GDR+ + GD ++ + AGD Sbjct: 92 LKQPGDRADGQPAGDRADGQPAGDRADGQPAGDRAAGQPAGD 133
>HRP1_PLAFA (P05227) Histidine-rich protein precursor (Clone PFHRP-II)| Length = 332 Score = 32.0 bits (71), Expect = 1.6 Identities = 15/32 (46%), Positives = 15/32 (46%) Frame = -3 Query: 516 AHHCA*QETAHHCA*QETAHHCA*QETGHHCA 421 AHH A AHH A AHH A HH A Sbjct: 126 AHHAADAHHAHHAADAHHAHHAADAHHAHHAA 157 Score = 32.0 bits (71), Expect = 1.6 Identities = 15/32 (46%), Positives = 15/32 (46%) Frame = -3 Query: 516 AHHCA*QETAHHCA*QETAHHCA*QETGHHCA 421 AHH A AHH A AHH A HH A Sbjct: 117 AHHAADAHHAHHAADAHHAHHAADAHHAHHAA 148 Score = 32.0 bits (71), Expect = 1.6 Identities = 15/32 (46%), Positives = 15/32 (46%) Frame = -3 Query: 516 AHHCA*QETAHHCA*QETAHHCA*QETGHHCA 421 AHH A AHH A AHH A HH A Sbjct: 108 AHHAADAHHAHHAADAHHAHHAADAHHAHHAA 139 Score = 32.0 bits (71), Expect = 1.6 Identities = 15/32 (46%), Positives = 15/32 (46%) Frame = -3 Query: 516 AHHCA*QETAHHCA*QETAHHCA*QETGHHCA 421 AHH A AHH A AHH A HH A Sbjct: 99 AHHAADAHHAHHAADAHHAHHAADAHHAHHAA 130 Score = 32.0 bits (71), Expect = 1.6 Identities = 15/32 (46%), Positives = 15/32 (46%) Frame = -3 Query: 516 AHHCA*QETAHHCA*QETAHHCA*QETGHHCA 421 AHH A AHH A AHH A HH A Sbjct: 90 AHHAADAHHAHHAADAHHAHHAADAHHAHHAA 121 Score = 32.0 bits (71), Expect = 1.6 Identities = 15/32 (46%), Positives = 15/32 (46%) Frame = -3 Query: 516 AHHCA*QETAHHCA*QETAHHCA*QETGHHCA 421 AHH A AHH A AHH A HH A Sbjct: 81 AHHAADAHHAHHAADAHHAHHAADAHHAHHAA 112 Score = 32.0 bits (71), Expect = 1.6 Identities = 15/32 (46%), Positives = 15/32 (46%) Frame = -3 Query: 516 AHHCA*QETAHHCA*QETAHHCA*QETGHHCA 421 AHH A AHH A AHH A HH A Sbjct: 72 AHHAADAHHAHHAADAHHAHHAADAHHAHHAA 103 Score = 30.8 bits (68), Expect = 3.6 Identities = 14/32 (43%), Positives = 15/32 (46%) Frame = -3 Query: 516 AHHCA*QETAHHCA*QETAHHCA*QETGHHCA 421 AHH A AHH A AHH A HH + Sbjct: 135 AHHAADAHHAHHAADAHHAHHAAYAHHAHHAS 166
>CSP_PLAVS (P13826) Circumsporozoite protein (CS) (Fragment)| Length = 343 Score = 32.0 bits (71), Expect = 1.6 Identities = 16/42 (38%), Positives = 26/42 (61%) Frame = -2 Query: 535 LREPGDRSSLRLTGDRSSLRLTGDRSSLRLTGDWSSLRLAGD 410 L++PGDR+ + GDR+ + GDR+ + GD + + AGD Sbjct: 58 LKQPGDRADGQPAGDRADGQPAGDRADGQPAGDRADGQPAGD 99
>CSP_PLASI (Q03110) Circumsporozoite protein precursor (CS)| Length = 386 Score = 32.0 bits (71), Expect = 1.6 Identities = 16/42 (38%), Positives = 26/42 (61%) Frame = -2 Query: 535 LREPGDRSSLRLTGDRSSLRLTGDRSSLRLTGDWSSLRLAGD 410 L++PGDR+ + GDR+ + GDR+ + GD + + AGD Sbjct: 92 LKQPGDRADGQPAGDRADGQPAGDRADGQPAGDRADGQPAGD 133
>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA protein kinase) Length = 1007 Score = 31.6 bits (70), Expect = 2.1 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%) Frame = +3 Query: 423 RNDDQSPVRRSD-----ERSPVRRNDERSPVRRNDERSPGSRSPST*AECQTTEDQWNRA 587 R+ D SP+ R RSP+RR RSP+RR+ SRSP + ++ + R Sbjct: 426 RSKDASPINRWSPTRRRSRSPIRRRS-RSPLRRSRSPRRRSRSPRRRDRSRRSKSRLRRR 484 Query: 588 ARIGG 602 +R G Sbjct: 485 SRSRG 489
>PRGC1_HUMAN (Q9UBK2) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) (Ligand effect modulator 6) Length = 798 Score = 31.2 bits (69), Expect = 2.8 Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = +3 Query: 411 SPARRNDDQSPVR-RSDERSPVR-RNDERSPVRRNDERSPGSRSPS 542 SP + Q P R RS RS R R+ RSP R+ RSPGSRS S Sbjct: 552 SPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSS 597
>PRGC1_RAT (Q9QYK2) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 796 Score = 31.2 bits (69), Expect = 2.8 Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = +3 Query: 411 SPARRNDDQSPVR-RSDERSPVR-RNDERSPVRRNDERSPGSRSPS 542 SP + Q P R RS RS R R+ RSP R+ RSPGSRS S Sbjct: 550 SPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSS 595
>PRGC1_BOVIN (Q865B7) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 796 Score = 31.2 bits (69), Expect = 2.8 Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = +3 Query: 411 SPARRNDDQSPVR-RSDERSPVR-RNDERSPVRRNDERSPGSRSPS 542 SP + Q P R RS RS R R+ RSP R+ RSPGSRS S Sbjct: 551 SPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSS 596
>PRGC1_MOUSE (O70343) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 797 Score = 31.2 bits (69), Expect = 2.8 Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = +3 Query: 411 SPARRNDDQSPVR-RSDERSPVR-RNDERSPVRRNDERSPGSRSPS 542 SP + Q P R RS RS R R+ RSP R+ RSPGSRS S Sbjct: 551 SPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSS 596
>CCAR1_MOUSE (Q8CH18) Cell division cycle and apoptosis regulator protein 1| (Cell cycle and apoptosis regulatory protein 1) (CARP-1) Length = 1146 Score = 30.8 bits (68), Expect = 3.6 Identities = 23/40 (57%), Positives = 25/40 (62%), Gaps = 6/40 (15%) Frame = +3 Query: 423 RNDDQSPVR-----RSDERSPVR-RNDERSPVRRNDERSP 524 R DD+S R RS ERSP R R+ ERSP RR ERSP Sbjct: 311 RKDDRSRERDRERRRSRERSPQRKRSRERSP-RRERERSP 349
>CCAR1_HUMAN (Q8IX12) Cell division cycle and apoptosis regulator protein 1| (Cell cycle and apoptosis regulatory protein 1) (CARP-1) (Death inducer with SAP domain) Length = 1150 Score = 30.8 bits (68), Expect = 3.6 Identities = 23/40 (57%), Positives = 25/40 (62%), Gaps = 6/40 (15%) Frame = +3 Query: 423 RNDDQSPVR-----RSDERSPVR-RNDERSPVRRNDERSP 524 R DD+S R RS ERSP R R+ ERSP RR ERSP Sbjct: 314 RKDDRSRERERERRRSRERSPQRKRSRERSP-RRERERSP 352
>YOD2_CAEEL (P34594) Hypothetical protein ZC262.2| Length = 233 Score = 30.8 bits (68), Expect = 3.6 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = +3 Query: 405 EGSPAR-RNDDQSPVRRSDERSPVRRNDERSPVRRNDERSPGS 530 E SP R R+ +++ RR D+R RR D RR+D R GS Sbjct: 47 ERSPKRDRHPEKNESRRHDDRDQERRRDYGRNDRRDDRRGDGS 89
>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4 kinase) Length = 1007 Score = 30.8 bits (68), Expect = 3.6 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Frame = +3 Query: 411 SPARRNDDQSPVRRSD-----ERSPVRRNDERSPVRRNDERSPGSRSPST*AECQTTEDQ 575 S R+ D SP+ R RSP+RR RSP+RR+ SRSP + + + Sbjct: 422 SRRERSKDASPINRWSPTRRRSRSPIRRRS-RSPLRRSRSPRRRSRSPRRRDRGRRSRSR 480 Query: 576 WNRAARIGG 602 R +R G Sbjct: 481 LRRRSRSRG 489
>VE2_HPV05 (P06921) Regulatory protein E2| Length = 514 Score = 30.4 bits (67), Expect = 4.7 Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = +3 Query: 450 RSDERSPV--RRNDERSPVRRNDERSPGSRSPST*AECQTTEDQWNRA 587 RS RSP RR RSP RR SRSPST + C T Q RA Sbjct: 311 RSRGRSPTTCRRGGGRSPRRR-------SRSPSTSSSCTTQRSQRARA 351
>PRGC1_PIG (Q865B6) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 796 Score = 30.4 bits (67), Expect = 4.7 Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = +3 Query: 411 SPARRNDDQSPVR-RSDERS-PVRRNDERSPVRRNDERSPGSRSPS 542 SP + Q P R RS RS R+ RSP R+ RSPGSRS S Sbjct: 550 SPPKSLFSQRPQRMRSRSRSFSQHRSCSRSPYSRSRSRSPGSRSSS 595
>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2386 Score = 30.4 bits (67), Expect = 4.7 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = -3 Query: 342 LCHPSCHQQDCSCGSCYD*DFCLCH 268 LC P C Q C GSC + D C CH Sbjct: 1759 LCRPVC-AQGCVNGSCVEPDHCRCH 1782
>VE2_HPV5B (P26545) Regulatory protein E2| Length = 514 Score = 30.0 bits (66), Expect = 6.2 Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = +3 Query: 450 RSDERSP--VRRNDERSPVRRNDERSPGSRSPST*AECQTTEDQWNRA 587 RS RSP RR RSP RR SRSPST + C T Q RA Sbjct: 311 RSRGRSPSTCRRGGGRSPRRR-------SRSPSTYSSCTTQRSQRARA 351
>MT_GOBCO (Q800D3) Metallothionein (MT)| Length = 60 Score = 30.0 bits (66), Expect = 6.2 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = -3 Query: 348 NCLCHPSCHQQDCSCGSCYD*DFCLCHASCN 256 NC C SC ++CSC SC C + C+ Sbjct: 11 NCTCGGSCTCKNCSCTSCKKSCCSCCPSGCS 41
>YNE1_CAEEL (P30640) Hypothetical protein R08D7.1| Length = 458 Score = 29.6 bits (65), Expect = 8.0 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = +3 Query: 405 EGSPARRNDDQSPVRRSDERSPVRRNDERSPVRRNDERSPGSRSPST*AECQTTED 572 E SP+ RN +SP R +R + R+ RR+ + SP R PS+ A + +D Sbjct: 169 EESPSARNR-RSPPRTRRDRHDSDNSPPRNRSRRDSDNSPPRRRPSSPARRRKDDD 223
>CCAR1_XENLA (Q641G3) Cell division cycle and apoptosis regulator protein 1| Length = 1157 Score = 29.6 bits (65), Expect = 8.0 Identities = 19/29 (65%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = +3 Query: 420 RRNDDQSPVR-RSDERSPVRRNDERSPVR 503 RR+ D+SP R RS ERSP RR ERSP R Sbjct: 334 RRSRDRSPQRKRSRERSP-RRERERSPRR 361 Score = 29.6 bits (65), Expect = 8.0 Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = +3 Query: 420 RRNDDQSPVRRSDERSPVR-RNDERSPVRRNDERSP 524 R + + RRS +RSP R R+ ERSP RR ERSP Sbjct: 325 RNRERERERRRSRDRSPQRKRSRERSP-RRERERSP 359
>MT_MELGA (P68498) Metallothionein (MT)| Length = 63 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -3 Query: 348 NCLCHPSCHQQDCSCGSCYD*DFCLCHASCNH 253 +C C SC ++C C SC C A CN+ Sbjct: 13 SCSCAGSCKCKNCRCRSCRKSCCSCCPAGCNN 44
>MT_CHICK (P68497) Metallothionein (MT)| Length = 63 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -3 Query: 348 NCLCHPSCHQQDCSCGSCYD*DFCLCHASCNH 253 +C C SC ++C C SC C A CN+ Sbjct: 13 SCSCAGSCKCKNCRCRSCRKSCCSCCPAGCNN 44
>MT_CAIMO (P68495) Metallothionein (MT)| Length = 63 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -3 Query: 348 NCLCHPSCHQQDCSCGSCYD*DFCLCHASCNH 253 +C C SC ++C C SC C A CN+ Sbjct: 13 SCSCAGSCKCKNCRCRSCRKSCCSCCPAGCNN 44
>MT_ANAPL (P68494) Metallothionein (MT)| Length = 63 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -3 Query: 348 NCLCHPSCHQQDCSCGSCYD*DFCLCHASCNH 253 +C C SC ++C C SC C A CN+ Sbjct: 13 SCSCAGSCKCKNCRCRSCRKSCCSCCPAGCNN 44
>HMOC_DROME (P22810) Homeotic protein ocelliless (Protein orthodenticle)| Length = 671 Score = 29.6 bits (65), Expect = 8.0 Identities = 21/65 (32%), Positives = 27/65 (41%) Frame = -1 Query: 536 ATRAWRPLIIAPNRRPLIIAPNRRPLITAPNRRLVIIAPSRRPLARRWCLARRATSASAC 357 A RA RP I+ R P+R P P+ R I RR R WC + +A+ Sbjct: 522 AIRATRPPILVCRHRH----PSRAPCPRRPSPRTAWITCRRRISTRIWCRIYSSNTAAVA 577 Query: 356 GRQTV 342 TV Sbjct: 578 ATTTV 582 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,554,636 Number of Sequences: 219361 Number of extensions: 1156735 Number of successful extensions: 4264 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3711 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4217 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
