ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags10e01 |
|---|---|
| Clone Library Name | barley_pub |
>CHMU_ARATH (P42738) Chorismate mutase, chloroplast precursor (EC 5.4.99.5)| (CM-1) Length = 334 Score = 206 bits (525), Expect(3) = 2e-59 Identities = 96/127 (75%), Positives = 109/127 (85%) Frame = +3 Query: 6 KLHAKVGRYKSPDEHPFFPEDLPETLLPPIQYPTVLHPIADSININKEIWKMYFDEVIPR 185 KLHAKVGR+KSPDEHPFFP+DLPE +LPP+QYP VLH ADSININK+IW MYF +++PR Sbjct: 137 KLHAKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININKKIWNMYFRDLVPR 196 Query: 186 LVKEGSDGNSGSSALCDTTCLQALSKRIHYGKFVAEAKFQESPEAYTPAIKAQDGDQLMQ 365 LVK+G DGN GS+A+CD CLQ LSKRIHYGKFVAEAKFQ SPEAY AIKAQD D LM Sbjct: 197 LVKKGDDGNYGSTAVCDAICLQCLSKRIHYGKFVAEAKFQASPEAYESAIKAQDKDALMD 256 Query: 366 LLTYETV 386 +LT+ TV Sbjct: 257 MLTFPTV 263 Score = 31.6 bits (70), Expect(3) = 2e-59 Identities = 15/22 (68%), Positives = 16/22 (72%) Frame = +2 Query: 476 VYKIRPSLVAGLYSNRIMPLTK 541 VYKI P LV LY + IMPLTK Sbjct: 301 VYKISPILVGDLYGDWIMPLTK 322 Score = 31.6 bits (70), Expect(3) = 2e-59 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +1 Query: 388 ERAIEHRVETKAKIFGQEVNIGAEAK 465 E AI+ RVE K + +GQEV +G E K Sbjct: 264 EDAIKKRVEMKTRTYGQEVKVGMEEK 289
>CHMU_YEAST (P32178) Chorismate mutase (EC 5.4.99.5) (CM)| Length = 256 Score = 120 bits (300), Expect = 3e-27 Identities = 58/127 (45%), Positives = 84/127 (66%), Gaps = 2/127 (1%) Frame = +3 Query: 12 HAKVGRYKSPDEHPFFPEDLPETLLPPIQYPTVLHPIADSININKEIWKMYFDEVIPRLV 191 H+++ R++SPDE PFFP+ + ++ LP I YP +L P A +N N +I K+Y +++IP + Sbjct: 71 HSRIRRFESPDETPFFPDKIQKSFLPSINYPQILAPYAPEVNYNDKIKKVYIEKIIPLIS 130 Query: 192 KEGSD--GNSGSSALCDTTCLQALSKRIHYGKFVAEAKFQESPEAYTPAIKAQDGDQLMQ 365 K D N GS A D CLQ+LS+RIH+GKFVAEAKFQ YT IK++D + +M+ Sbjct: 131 KRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFVAEAKFQSDIPLYTKLIKSKDVEGIMK 190 Query: 366 LLTYETV 386 +T V Sbjct: 191 NITNSAV 197
>CHMU_SCHPO (O13739) Probable chorismate mutase (EC 5.4.99.5) (CM)| Length = 251 Score = 110 bits (274), Expect = 3e-24 Identities = 55/115 (47%), Positives = 79/115 (68%), Gaps = 1/115 (0%) Frame = +3 Query: 6 KLHAKVGRYKSPDEHPFFPEDLPETLLPPIQYPTVLHPIADSININKEIWKMYFDEVIPR 185 K++A V RY SP+E+PF ++LPE +LP LHP +++N+N EI + Y +E++P+ Sbjct: 68 KVYALVRRYASPEEYPF-TDNLPEPILPKFSGKFPLHP--NNVNVNSEILEYYINEIVPK 124 Query: 186 LVKEGSD-GNSGSSALCDTTCLQALSKRIHYGKFVAEAKFQESPEAYTPAIKAQD 347 + G D N GS+ +CD CLQ+LS+RIHYGKFVAEAK+ +PE Y I A+D Sbjct: 125 ISSPGDDFDNYGSTVVCDIRCLQSLSRRIHYGKFVAEAKYLANPEKYKKLILARD 179
>RL1_NITOC (Q3J8Q4) 50S ribosomal protein L1| Length = 231 Score = 34.7 bits (78), Expect = 0.18 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Frame = +3 Query: 102 PTVLHPIADSININKEIWKMYFDEVIPRLVKEGSDGNSGSSALCDTTCL-QALSKRIHYG 278 P L+P+ +++N+ KE+ K+ F+E + V G D + +T L L K + G Sbjct: 17 PGKLYPVEEALNLLKEVAKVKFEESVDVAVNLGVDPRKSDQVVRGSTVLPNGLGKTVRVG 76 Query: 279 KFVAEAKFQESPEAYTPAIKAQD 347 F + + A + +D Sbjct: 77 VFTQGVNAEAAKNAGADVVGLED 99
>RL1_NITWN (Q3SSY3) 50S ribosomal protein L1| Length = 230 Score = 32.3 bits (72), Expect = 0.88 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Frame = +3 Query: 111 LHPIADSININKEIWKMYFDEVIPRLVKEGSDGNSGSSALCDTTCL-QALSKRIHYGKFV 287 L+PIAD+I + KE FDE I + G D + L + + G F Sbjct: 19 LYPIADAIRMVKERATSKFDETIEIAMNLGVDPRHADQMVRGVVTLPNGTGRTLRVGVFA 78 Query: 288 AEAKFQESPEAYTPAIKAQD 347 AK +E+ A + A+D Sbjct: 79 RGAKAEEAKAAGADVVGAED 98
>RL1_BRAJA (Q89J70) 50S ribosomal protein L1| Length = 230 Score = 32.3 bits (72), Expect = 0.88 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Frame = +3 Query: 111 LHPIADSININKEIWKMYFDEVIPRLVKEGSDGNSGSSALCDTTCL-QALSKRIHYGKFV 287 L+P+A++I + KE K FDE I + G D + L + + G F Sbjct: 19 LYPLAEAIKMVKERAKAKFDETIEVAINLGVDPRHADQMVRGVVTLPNGTGRTLRVGVFA 78 Query: 288 AEAKFQESPEAYTPAIKAQD 347 AK E+ A + A+D Sbjct: 79 RGAKADEAKAAGADVVGAED 98
>FXL13_HUMAN (Q8NEE6) F-box/LRR-repeat protein 13 (F-box and leucine-rich repeat| protein 13) Length = 735 Score = 32.3 bits (72), Expect = 0.88 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 13/83 (15%) Frame = -2 Query: 476 QGMPLASAPMFTS---------CPNILAL-VSTRCSMARSDRLVGEELH*LITVLSFYCR 327 Q + ++ P FT CP +L L +S R+ RL+ H L + YCR Sbjct: 248 QELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLAYCR 307 Query: 326 CVSFRGLLKLGL---CHKLPIVD 267 + +GL L L CHKL +D Sbjct: 308 RFTDKGLQYLNLGNGCHKLIYLD 330
>IFNT1_BOVIN (P15696) Interferon tau-1 precursor (IFN-tau1) (Trophoblast protein| 1) (TP-1) (Trophoblastin) (Antiluteolysin) (Trophoblast antiluteolytic protein) Length = 195 Score = 31.6 bits (70), Expect = 1.5 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -1 Query: 543 SLVSGMILLLYSPATRLGLILYTGHALGFSSYVHLLSKYLSLGFHP 406 SL+ ++L+ Y P LG L H LG + LL++ L HP Sbjct: 6 SLLMALVLVSYGPGRSLGCYLSEDHMLGARENLRLLARMNRLSPHP 51
>RPOC_BRUSU (Q8G070) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 30.8 bits (68), Expect = 2.6 Identities = 22/78 (28%), Positives = 33/78 (42%) Frame = +3 Query: 156 KMYFDEVIPRLVKEGSDGNSGSSALCDTTCLQALSKRIHYGKFVAEAKFQESPEAYTPAI 335 ++ +E+ RL++EG SG+ L T + F++ A FQE+ T A Sbjct: 1277 RIELEEINERLIEEGKKPGSGNPVLLGIT-----KASLQTPSFISAASFQETTRVLTEAA 1331 Query: 336 KAQDGDQLMQLLTYETVG 389 A D L L VG Sbjct: 1332 VAGKMDTLQGLKENVIVG 1349
>RPOC_BRUME (Q8YHP7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 30.8 bits (68), Expect = 2.6 Identities = 22/78 (28%), Positives = 33/78 (42%) Frame = +3 Query: 156 KMYFDEVIPRLVKEGSDGNSGSSALCDTTCLQALSKRIHYGKFVAEAKFQESPEAYTPAI 335 ++ +E+ RL++EG SG+ L T + F++ A FQE+ T A Sbjct: 1277 RIELEEINERLIEEGKKPGSGNPVLLGIT-----KASLQTPSFISAASFQETTRVLTEAA 1331 Query: 336 KAQDGDQLMQLLTYETVG 389 A D L L VG Sbjct: 1332 VAGKMDTLQGLKENVIVG 1349
>RPOC_BRUAB (Q57CP9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 30.8 bits (68), Expect = 2.6 Identities = 22/78 (28%), Positives = 33/78 (42%) Frame = +3 Query: 156 KMYFDEVIPRLVKEGSDGNSGSSALCDTTCLQALSKRIHYGKFVAEAKFQESPEAYTPAI 335 ++ +E+ RL++EG SG+ L T + F++ A FQE+ T A Sbjct: 1277 RIELEEINERLIEEGKKPGSGNPVLLGIT-----KASLQTPSFISAASFQETTRVLTEAA 1331 Query: 336 KAQDGDQLMQLLTYETVG 389 A D L L VG Sbjct: 1332 VAGKMDTLQGLKENVIVG 1349
>LUKS_STAAU (P31716) Leukocidin S subunit precursor| Length = 315 Score = 30.8 bits (68), Expect = 2.6 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Frame = -3 Query: 187 NLGI-TSSKYIFQISLLIL--MESAIGCRTVGYWIGGNSVSGRSSGKNG 50 N+G+ T+ KY+ I+ L +ES +T+GY IGGN S S G NG Sbjct: 110 NIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNG 158
>HLGC_STAAW (Q7A019) Gamma-hemolysin component C precursor| Length = 315 Score = 30.8 bits (68), Expect = 2.6 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Frame = -3 Query: 187 NLGI-TSSKYIFQISLLIL--MESAIGCRTVGYWIGGNSVSGRSSGKNG 50 N+G+ T+ KY+ I+ L +ES +T+GY IGGN S S G NG Sbjct: 110 NIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNG 158
>HLGC_STAAU (Q07227) Gamma-hemolysin component C precursor (H-gamma-1)| (H-gamma-I) Length = 315 Score = 30.8 bits (68), Expect = 2.6 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Frame = -3 Query: 187 NLGI-TSSKYIFQISLLIL--MESAIGCRTVGYWIGGNSVSGRSSGKNG 50 N+G+ T+ KY+ I+ L +ES +T+GY IGGN S S G NG Sbjct: 110 NIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNG 158
>HLGC_STAAS (Q6G6Q1) Gamma-hemolysin component C precursor| Length = 315 Score = 30.8 bits (68), Expect = 2.6 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Frame = -3 Query: 187 NLGI-TSSKYIFQISLLIL--MESAIGCRTVGYWIGGNSVSGRSSGKNG 50 N+G+ T+ KY+ I+ L +ES +T+GY IGGN S S G NG Sbjct: 110 NIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNG 158
>HLGC_STAAR (Q6GE13) Gamma-hemolysin component C precursor| Length = 315 Score = 30.8 bits (68), Expect = 2.6 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Frame = -3 Query: 187 NLGI-TSSKYIFQISLLIL--MESAIGCRTVGYWIGGNSVSGRSSGKNG 50 N+G+ T+ KY+ I+ L +ES +T+GY IGGN S S G NG Sbjct: 110 NIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNG 158
>HLGC_STAAN (Q7A3S2) Gamma-hemolysin component C precursor| Length = 315 Score = 30.8 bits (68), Expect = 2.6 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Frame = -3 Query: 187 NLGI-TSSKYIFQISLLIL--MESAIGCRTVGYWIGGNSVSGRSSGKNG 50 N+G+ T+ KY+ I+ L +ES +T+GY IGGN S S G NG Sbjct: 110 NIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNG 158
>HLGC_STAAM (Q99RL1) Gamma-hemolysin component C precursor| Length = 315 Score = 30.8 bits (68), Expect = 2.6 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Frame = -3 Query: 187 NLGI-TSSKYIFQISLLIL--MESAIGCRTVGYWIGGNSVSGRSSGKNG 50 N+G+ T+ KY+ I+ L +ES +T+GY IGGN S S G NG Sbjct: 110 NIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNG 158
>VACA_HELPY (P55981) Vacuolating cytotoxin precursor| Length = 1290 Score = 30.4 bits (67), Expect = 3.3 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = -2 Query: 245 AGRVTKSTGSRISITSFFHQPWNNFIKVHFPNLFVDINGISNRMQNRW 102 +G V +G ++ I F++ PWN F + N+ + S+ +N W Sbjct: 592 SGGVKFKSGEKLVIDEFYYSPWNYFDARNIKNVEITRKFASSTPENPW 639
>VACA2_HELPY (Q48245) Vacuolating cytotoxin precursor| Length = 1287 Score = 30.4 bits (67), Expect = 3.3 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = -2 Query: 245 AGRVTKSTGSRISITSFFHQPWNNFIKVHFPNLFVDINGISNRMQNRW 102 +G V +G ++ I F++ PWN F + N+ + S+ +N W Sbjct: 589 SGGVKFKSGEKLVIDEFYYSPWNYFDARNIKNVEITRKFASSTPENPW 636
>VACA_HELPJ (Q9ZKW5) Vacuolating cytotoxin precursor| Length = 1288 Score = 30.4 bits (67), Expect = 3.3 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = -2 Query: 245 AGRVTKSTGSRISITSFFHQPWNNFIKVHFPNLFVDINGISNRMQNRW 102 +G V +G ++ I F++ PWN F + N+ + S+ +N W Sbjct: 590 SGGVKFKSGEKLVINDFYYSPWNYFDARNVKNVEITRKFASSTPENPW 637
>G3P_ONCMY (O42259) Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)| (GAPDH) Length = 335 Score = 30.4 bits (67), Expect = 3.3 Identities = 18/44 (40%), Positives = 21/44 (47%) Frame = +3 Query: 219 SSALCDTTCLQALSKRIHYGKFVAEAKFQESPEAYTPAIKAQDG 350 S+A C T CL L+K IH F E + AYT K DG Sbjct: 148 SNASCTTNCLAPLAKVIH-DNFGIEEALMTTVHAYTATQKTVDG 190
>ARGE_LEPBI (P13440) Putative acetylornithine deacetylase (EC 3.5.1.16)| (Acetylornithinase) Length = 277 Score = 29.3 bits (64), Expect = 7.5 Identities = 22/82 (26%), Positives = 34/82 (41%) Frame = +3 Query: 144 KEIWKMYFDEVIPRLVKEGSDGNSGSSALCDTTCLQALSKRIHYGKFVAEAKFQESPEAY 323 +++ K FDE R+ KEG G+ L T ++ + + A FQE+ + Sbjct: 139 QQVDKFLFDEENDRVEKEGGSPAQGTPVLLGLT-----KASLNTESYFSAASFQETTKVL 193 Query: 324 TPAIKAQDGDQLMQLLTYETVG 389 T A D LM L +G Sbjct: 194 TDAAIKGKTDNLMGLKENVIIG 215
>SEP2_ARATH (P29384) Developmental protein SEPALLATA2 (Agamous-like MADS-box| protein AGL4) Length = 250 Score = 29.3 bits (64), Expect = 7.5 Identities = 15/59 (25%), Positives = 26/59 (44%) Frame = +3 Query: 345 DGDQLMQLLTYETVGACHRTSGGNQG*DIWTGGEHRS*SQGHALCTRSGPAWSLDCTAT 521 D ++ + + + +G H GG W GG+ ++ + GH G SL+C T Sbjct: 163 DANRALSMKLEDMIGVRHHHIGGG-----WEGGDQQNIAYGHPQAHSQGLYQSLECDPT 216
>G3P_SORMA (Q8WZN0) Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)| (GAPDH) Length = 338 Score = 29.3 bits (64), Expect = 7.5 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = +3 Query: 195 EGSDGNSG--SSALCDTTCLQALSKRIHYGKFVAEAKFQESPEAYTPAIKAQDG 350 E DG++ S+A C T CL L+K IH + E + +YT K DG Sbjct: 137 ESYDGSANVISNASCTTNCLAPLAKVIHDNFTIVEG-LMTTVHSYTATQKTVDG 189
>HRPN_ERWAM (Q01099) Harpin hrpN (Harpin-Ea)| Length = 403 Score = 29.3 bits (64), Expect = 7.5 Identities = 35/124 (28%), Positives = 51/124 (41%) Frame = +3 Query: 123 ADSININKEIWKMYFDEVIPRLVKEGSDGNSGSSALCDTTCLQALSKRIHYGKFVAEAKF 302 +DS + +++ KM F E++ L +G DG GSS+ GK E + Sbjct: 152 SDSSDPMQQLLKM-FSEIMQSLFGDGQDGTQGSSS---------------GGKQPTEGEQ 195 Query: 303 QESPEAYTPAIKAQDGDQLMQLLTYETVGACHRTSGGNQG*DIWTGGEHRS*SQGHALCT 482 + T A+ G+ L QLL + GG QG + TG + S G L Sbjct: 196 NAYKKGVTDALSGLMGNGLSQLLG-------NGGLGGGQGGNAGTGLDGSS-LGGKGLQN 247 Query: 483 RSGP 494 SGP Sbjct: 248 LSGP 251
>FTSX_MYCTU (P96293) Cell division protein ftsX homolog| Length = 297 Score = 28.9 bits (63), Expect = 9.7 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +3 Query: 213 SGSSALCDTTCLQALSKRIHYGKFVAEAKFQESPEAYTPAIK 338 S + + CDTT +AL ++I V +F +AY AI+ Sbjct: 67 SANDSSCDTTACKALREKIETRSDVKAVRFLNRQQAYDDAIR 108
>FTSX_MYCBO (Q7TX91) Cell division protein ftsX homolog| Length = 297 Score = 28.9 bits (63), Expect = 9.7 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +3 Query: 213 SGSSALCDTTCLQALSKRIHYGKFVAEAKFQESPEAYTPAIK 338 S + + CDTT +AL ++I V +F +AY AI+ Sbjct: 67 SANDSSCDTTACKALREKIETRSDVKAVRFLNRQQAYDDAIR 108
>SYD_CAEEL (Q03577) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 531 Score = 28.9 bits (63), Expect = 9.7 Identities = 17/58 (29%), Positives = 28/58 (48%) Frame = -3 Query: 226 ALDPEFPSLPSFTNLGITSSKYIFQISLLILMESAIGCRTVGYWIGGNSVSGRSSGKN 53 A+D E S + + G+ +SK ++ L + E + T W+ G + RS GKN Sbjct: 42 AMDQEDASKDFYGSYGLVNSKEKKVLNFLKVKEINVSNATKDVWVRGRIHTTRSKGKN 99
>RPOC_DESPS (Q6AP77) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1349 Score = 28.9 bits (63), Expect = 9.7 Identities = 23/79 (29%), Positives = 35/79 (44%) Frame = +3 Query: 132 ININKEIWKMYFDEVIPRLVKEGSDGNSGSSALCDTTCLQALSKRIHYGKFVAEAKFQES 311 I N E WK F+E RL+ EG + L T ++ F++ A FQE+ Sbjct: 1258 IGENVEWWK--FEEERDRLLAEGKKPGAAEPLLLGVTKASLSTE-----SFISAASFQET 1310 Query: 312 PEAYTPAIKAQDGDQLMQL 368 + T A + D+L+ L Sbjct: 1311 TKVLTNAAMSGRVDELLGL 1329
>G3P_PHANO (Q9P8C0) Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)| (GAPDH) Length = 337 Score = 28.9 bits (63), Expect = 9.7 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = +3 Query: 219 SSALCDTTCLQALSKRIHYGKFVAEAKFQESPEAYTPAIKAQDG 350 S+A C T CL L+K IH KF + +YT K DG Sbjct: 147 SNASCTTNCLAPLAKVIH-DKFTIIEGLMTTVHSYTATQKVVDG 189
>G3PC_MAIZE (P08735) Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 (EC| 1.2.1.12) Length = 337 Score = 28.9 bits (63), Expect = 9.7 Identities = 20/53 (37%), Positives = 24/53 (45%) Frame = +3 Query: 192 KEGSDGNSGSSALCDTTCLQALSKRIHYGKFVAEAKFQESPEAYTPAIKAQDG 350 K SD N S+A C T CL L+K IH + E + A T K DG Sbjct: 141 KYTSDVNIVSNASCTTNCLAPLAKVIHDNFGIVEG-LMTTVHAITATQKTVDG 192 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,486,167 Number of Sequences: 219361 Number of extensions: 1952506 Number of successful extensions: 5804 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 5606 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5797 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
