ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal8p13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_190883.1| Oryza sativa (japonica cultivar-group), predic... 161 2e-36
2gb|AY108531.1| Zea mays PCO112988 mRNA sequence 161 2e-36
3gb|AY104121.1| Zea mays PCO141133 mRNA sequence 147 2e-32
4ref|XM_475493.1| Oryza sativa (japonica cultivar-group), predic... 131 1e-27
5dbj|AK070301.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 1e-27
6dbj|AK058219.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 1e-27
7gb|BT013323.1| Lycopersicon esculentum clone 135043R, mRNA sequence 101 1e-18
8gb|BT013262.1| Lycopersicon esculentum clone 134804F, mRNA sequence 94 3e-16
9emb|AJ519839.1|CAR519839 Coffea arabica mRNA for SUI1 protein 86 7e-14
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 86 7e-14
11dbj|AP003290.2| Oryza sativa (japonica cultivar-group) genomic D... 86 7e-14
12gb|DQ222518.1| Solanum tuberosum clone 120A06 unknown mRNA 84 3e-13
13gb|AC130605.3| Oryza sativa (japonica cultivar-group) chromosome... 70 4e-09
14gb|AY365040.1| Zea mays translation initiation factor-like gene,... 70 4e-09
15dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 70 4e-09
16dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
17dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
18emb|AJ249397.1|PPR249397 Phleum pratense mRNA for putative prote... 60 4e-06
19ref|XM_478516.1| Oryza sativa (japonica cultivar-group), mRNA 58 2e-05
20gb|AF380357.1|AF380357 Porteresia coarctata translational initia... 58 2e-05
21dbj|AK120697.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
22dbj|AK105037.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
23gb|AF094774.1|AF094774 Oryza sativa translation initiation facto... 58 2e-05
24emb|AJ519840.1|CAR519840 Coffea arabica sui1 gene, exons 1-5 54 3e-04
25emb|AJ309088.1|PPI309088 Pinus pinaster partial mRNA for putativ... 42 1.0
26gb|DQ083223.1| Oryza sativa (indica cultivar-group) clone 5B12A6... 42 1.0
27gb|AC150773.2| Xenopus tropicalis clone CH216-69F7, complete seq... 42 1.0
28gb|AC124722.3| Mus musculus BAC clone RP23-389E7 from chromosome... 40 4.0
29gb|AC097512.2| Homo sapiens BAC clone RP11-412P11 from 4, comple... 40 4.0
30gb|AC090648.5| Genomic sequence for Mus musculus, clone RP23-331... 40 4.0
31dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 40 4.0

>ref|NM_190883.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 360

 Score =  161 bits (81), Expect = 2e-36
 Identities = 150/173 (86%), Gaps = 1/173 (0%)
 Strand = Plus / Minus

                                                                       
Query: 125 gtgttgcctaaaatccgtgaatcttgatactctctttctttgcaagtccagcc-tgcact 183
           |||| |||||||| ||||| || ||||| |||||||||||| ||| ||||||| || |||
Sbjct: 356 gtgtagcctaaaacccgtgtattttgatgctctctttctttacaattccagccctgaact 297

                                                                       
Query: 184 agaaatgtagcaacattcttacnctgatcaccttggagttggatgacctggcctanttct 243
           || || || |||||||| |||| |||||||||||| ||||| |||||||||||||  |||
Sbjct: 296 aggaacgtcgcaacatttttacgctgatcaccttgaagttgaatgacctggcctaactct 237

                                                                
Query: 244 ggatnctggactacagtaccattacagnagaattcctttttgagatccttgag 296
           ||||  ||||||||||||||||||||  ||||||||||||| |||||||||||
Sbjct: 236 ggatcttggactacagtaccattacaacagaattcctttttcagatccttgag 184



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>gb|AY108531.1| Zea mays PCO112988 mRNA sequence
          Length = 792

 Score =  161 bits (81), Expect = 2e-36
 Identities = 143/165 (86%)
 Strand = Plus / Minus

                                                                       
Query: 132 ctaaaatccgtgaatcttgatactctctttctttgcaagtccagcctgcactagaaatgt 191
           ||||||||||||||||||||| || ||||| ||  | | ||| ||||| |||||||| ||
Sbjct: 520 ctaaaatccgtgaatcttgatgctatcttttttcacgattccggcctggactagaaaagt 461

                                                                       
Query: 192 agcaacattcttacnctgatcaccttggagttggatgacctggcctanttctggatnctg 251
           ||| ||||| |||| |||||||||||| ||||| |||||||||||||  ||||||| |||
Sbjct: 460 agcgacatttttacgctgatcaccttgcagttgaatgacctggcctagctctggatcctg 401

                                                        
Query: 252 gactacagtaccattacagnagaattcctttttgagatccttgag 296
           ||||||||||||||| ||| |||| || |||||||||||||||||
Sbjct: 400 gactacagtaccattgcagcagaactcttttttgagatccttgag 356



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>gb|AY104121.1| Zea mays PCO141133 mRNA sequence
          Length = 815

 Score =  147 bits (74), Expect = 2e-32
 Identities = 136/158 (86%)
 Strand = Plus / Minus

                                                                       
Query: 139 ccgtgaatcttgatactctctttctttgcaagtccagcctgcactagaaatgtagcaaca 198
           ||||||||||||||  |||||||||| ||||  |||||||| ||||| || |||||||||
Sbjct: 506 ccgtgaatcttgatgttctctttcttcgcaatcccagcctgaactaggaaagtagcaaca 447

                                                                       
Query: 199 ttcttacnctgatcaccttggagttggatgacctggcctanttctggatnctggactaca 258
           ||||| | ||| ||||||||||| || |||||||||||||  ||||| | ||| ||||||
Sbjct: 446 ttcttgcgctggtcaccttggagctgaatgacctggcctagctctgggtcctgaactaca 387

                                                 
Query: 259 gtaccattacagnagaattcctttttgagatccttgag 296
           |||||||| ||| |||||||||| || |||||||||||
Sbjct: 386 gtaccattgcagcagaattccttcttcagatccttgag 349



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>ref|XM_475493.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 348

 Score =  131 bits (66), Expect = 1e-27
 Identities = 134/158 (84%)
 Strand = Plus / Minus

                                                                       
Query: 139 ccgtgaatcttgatactctctttctttgcaagtccagcctgcactagaaatgtagcaaca 198
           ||||||||||||||  | || ||||| ||||  |||||||| ||||| || || ||||||
Sbjct: 341 ccgtgaatcttgatgttgtccttcttagcaatcccagcctgaactaggaacgtggcaaca 282

                                                                       
Query: 199 ttcttacnctgatcaccttggagttggatgacctggcctanttctggatnctggactaca 258
           ||||||| |||||||||||| || || ||||||||||| |  |||||||  |||||||||
Sbjct: 281 ttcttacgctgatcaccttgaagctgaatgacctggccaagctctggatcttggactaca 222

                                                 
Query: 259 gtaccattacagnagaattcctttttgagatccttgag 296
           |||||||| ||| |||| |||||||| |||||||||||
Sbjct: 221 gtaccattgcagcagaactcctttttcagatccttgag 184



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>dbj|AK070301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049M22, full
            insert sequence
          Length = 1410

 Score =  131 bits (66), Expect = 1e-27
 Identities = 134/158 (84%)
 Strand = Plus / Minus

                                                                        
Query: 139  ccgtgaatcttgatactctctttctttgcaagtccagcctgcactagaaatgtagcaaca 198
            ||||||||||||||  | || ||||| ||||  |||||||| ||||| || || ||||||
Sbjct: 1178 ccgtgaatcttgatgttgtccttcttagcaatcccagcctgaactaggaacgtggcaaca 1119

                                                                        
Query: 199  ttcttacnctgatcaccttggagttggatgacctggcctanttctggatnctggactaca 258
            ||||||| |||||||||||| || || ||||||||||| |  |||||||  |||||||||
Sbjct: 1118 ttcttacgctgatcaccttgaagctgaatgacctggccaagctctggatcttggactaca 1059

                                                  
Query: 259  gtaccattacagnagaattcctttttgagatccttgag 296
            |||||||| ||| |||| |||||||| |||||||||||
Sbjct: 1058 gtaccattgcagcagaactcctttttcagatccttgag 1021



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>dbj|AK058219.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F05, full
           insert sequence
          Length = 731

 Score =  131 bits (66), Expect = 1e-27
 Identities = 134/158 (84%)
 Strand = Plus / Minus

                                                                       
Query: 139 ccgtgaatcttgatactctctttctttgcaagtccagcctgcactagaaatgtagcaaca 198
           ||||||||||||||  | || ||||| ||||  |||||||| ||||| || || ||||||
Sbjct: 499 ccgtgaatcttgatgttgtccttcttagcaatcccagcctgaactaggaacgtggcaaca 440

                                                                       
Query: 199 ttcttacnctgatcaccttggagttggatgacctggcctanttctggatnctggactaca 258
           ||||||| |||||||||||| || || ||||||||||| |  |||||||  |||||||||
Sbjct: 439 ttcttacgctgatcaccttgaagctgaatgacctggccaagctctggatcttggactaca 380

                                                 
Query: 259 gtaccattacagnagaattcctttttgagatccttgag 296
           |||||||| ||| |||| |||||||| |||||||||||
Sbjct: 379 gtaccattgcagcagaactcctttttcagatccttgag 342



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>gb|BT013323.1| Lycopersicon esculentum clone 135043R, mRNA sequence
          Length = 787

 Score =  101 bits (51), Expect = 1e-18
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                       
Query: 171 tccagcctgcactagaaatgtagcaacattcttacnctgatcaccttggagttggatgac 230
           ||||||||| || |||||||||| ||| ||||| | ||||||||| |||||||| || ||
Sbjct: 472 tccagcctggacaagaaatgtagaaacgttctttctctgatcaccctggagttgaataac 413

                                               
Query: 231 ctggcctanttctggatnctggactacagtaccatt 266
           |||||||| |||||||| |||||| |||||||||||
Sbjct: 412 ctggcctagttctggatcctggacaacagtaccatt 377



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>gb|BT013262.1| Lycopersicon esculentum clone 134804F, mRNA sequence
          Length = 1343

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 103/123 (83%)
 Strand = Plus / Minus

                                                                        
Query: 171  tccagcctgcactagaaatgtagcaacattcttacnctgatcaccttggagttggatgac 230
            ||||||||| || ||||| |||| ||| ||||| | ||| ||||| || ||||| || ||
Sbjct: 1075 tccagcctggacaagaaaggtagaaacgttcttcctctggtcaccctgaagttgaataac 1016

                                                                        
Query: 231  ctggcctanttctggatnctggactacagtaccattacagnagaattcctttttgagatc 290
            |||||||| ||| |||| |||||| ||||||||||| ||| ||||||| || ||||||||
Sbjct: 1015 ctggcctagttcaggatcctggacaacagtaccattgcagcagaattctttcttgagatc 956

               
Query: 291  ctt 293
            |||
Sbjct: 955  ctt 953



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>emb|AJ519839.1|CAR519839 Coffea arabica mRNA for SUI1 protein
          Length = 678

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 64/72 (88%)
 Strand = Plus / Minus

                                                                       
Query: 195 aacattcttacnctgatcaccttggagttggatgacctggcctanttctggatnctggac 254
           ||||||||||| |||||| ||||||||||| ||||||||||||| |||||| |  |||||
Sbjct: 413 aacattcttacgctgatccccttggagttgaatgacctggcctagttctgggtcttggac 354

                       
Query: 255 tacagtaccatt 266
            |||||||||||
Sbjct: 353 aacagtaccatt 342



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                            
Query: 229      acctggcctanttctggatnctggactacagtaccattacagnagaattcctttttgaga 288
                ||||||||||  |||||||  ||||||||||||||||||||  ||||||||||||| |||
Sbjct: 33644913 acctggcctaactctggatcttggactacagtaccattacaacagaattcctttttcaga 33644972

                        
Query: 289      tccttgag 296
                ||||||||
Sbjct: 33644973 tccttgag 33644980



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                          
Query: 176      cctgcactagaaatgtagcaacattcttacnctgatcaccttggagttggatgacctg 233
                |||| ||||| || || |||||||| |||| |||||||||||| ||||| ||||||||
Sbjct: 33644768 cctgaactaggaacgtcgcaacatttttacgctgatcaccttgaagttgaatgacctg 33644825



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                      
Query: 125      gtgttgcctaaaatccgtgaatcttgatactctctttctttgcaagtccagcct 178
                |||| |||||||| ||||| || ||||| |||||||||||| ||| ||||||||
Sbjct: 33644640 gtgtagcctaaaacccgtgtattttgatgctctctttctttacaattccagcct 33644693



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>dbj|AP003290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0684C02
          Length = 80086

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                         
Query: 229   acctggcctanttctggatnctggactacagtaccattacagnagaattcctttttgaga 288
             ||||||||||  |||||||  ||||||||||||||||||||  ||||||||||||| |||
Sbjct: 59785 acctggcctaactctggatcttggactacagtaccattacaacagaattcctttttcaga 59844

                     
Query: 289   tccttgag 296
             ||||||||
Sbjct: 59845 tccttgag 59852



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                       
Query: 176   cctgcactagaaatgtagcaacattcttacnctgatcaccttggagttggatgacctg 233
             |||| ||||| || || |||||||| |||| |||||||||||| ||||| ||||||||
Sbjct: 59640 cctgaactaggaacgtcgcaacatttttacgctgatcaccttgaagttgaatgacctg 59697



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                   
Query: 125   gtgttgcctaaaatccgtgaatcttgatactctctttctttgcaagtccagcct 178
             |||| |||||||| ||||| || ||||| |||||||||||| ||| ||||||||
Sbjct: 59512 gtgtagcctaaaacccgtgtattttgatgctctctttctttacaattccagcct 59565



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>gb|DQ222518.1| Solanum tuberosum clone 120A06 unknown mRNA
          Length = 699

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 113/138 (81%)
 Strand = Plus / Minus

                                                                       
Query: 156 ctctttctttgcaagtccagcctgcactagaaatgtagcaacattcttacnctgatcacc 215
           |||||||||  ||| ||||||||| || |||||||||| ||| ||||| | ||| ||| |
Sbjct: 463 ctctttcttcacaattccagcctggacaagaaatgtagaaacgttcttccgctggtcatc 404

                                                                       
Query: 216 ttggagttggatgacctggcctanttctggatnctggactacagtaccattacagnagaa 275
            || ||||| || |||||||||| ||| |||| ||| || ||||||||||| ||| ||||
Sbjct: 403 ctgaagttgaataacctggcctagttcaggatcctgaacgacagtaccattgcagcagaa 344

                             
Query: 276 ttcctttttgagatcctt 293
            || || |||||||||||
Sbjct: 343 ctctttcttgagatcctt 326



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>gb|AC130605.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0010D04,
             complete sequence
          Length = 122599

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                         
Query: 229   acctggcctanttctggatnctggactacagtaccattacagnagaattcctttttgaga 288
             |||||||| |  |||||||  ||||||||||||||||| ||| |||| |||||||| |||
Sbjct: 79955 acctggccaagctctggatcttggactacagtaccattgcagcagaactcctttttcaga 79896

                     
Query: 289   tccttgag 296
             ||||||||
Sbjct: 79895 tccttgag 79888



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 176   cctgcactagaaatgtagcaacattcttacnctgatcaccttggagttggatgacctg 233
             |||| ||||| || || ||||||||||||| |||||||||||| || || ||||||||
Sbjct: 80087 cctgaactaggaacgtggcaacattcttacgctgatcaccttgaagctgaatgacctg 80030



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>gb|AY365040.1| Zea mays translation initiation factor-like gene, partial sequence
          Length = 656

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                       
Query: 229 acctggcctanttctggatnctggactacagtaccattacagnagaattcctttttgaga 288
           ||||||||||  ||||| | ||| |||||||||||||| ||| |||||||||| || |||
Sbjct: 551 acctggcctagctctgggtcctgaactacagtaccattgcagcagaattccttcttcaga 492

                   
Query: 289 tccttgag 296
           ||||||||
Sbjct: 491 tccttgag 484



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                            
Query: 229      acctggcctanttctggatnctggactacagtaccattacagnagaattcctttttgaga 288
                |||||||| |  |||||||  ||||||||||||||||| ||| |||| |||||||| |||
Sbjct: 24394165 acctggccaagctctggatcttggactacagtaccattgcagcagaactcctttttcaga 24394106

                        
Query: 289      tccttgag 296
                ||||||||
Sbjct: 24394105 tccttgag 24394098



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                          
Query: 176      cctgcactagaaatgtagcaacattcttacnctgatcaccttggagttggatgacctg 233
                |||| ||||| || || ||||||||||||| |||||||||||| || || ||||||||
Sbjct: 24394297 cctgaactaggaacgtggcaacattcttacgctgatcaccttgaagctgaatgacctg 24394240



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                           
Query: 229     acctggcctanttctggatnctggactacagtaccattacagnagaattcctttttgaga 288
               |||||||| |  |||||||  |||| |||||||||||| ||| ||||||||||||| |||
Sbjct: 2840953 acctggccaagctctggatcttggagtacagtaccattgcagcagaattcctttttcaga 2841012

                       
Query: 289     tccttgag 296
               || |||||
Sbjct: 2841013 tcattgag 2841020



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>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0050G13
          Length = 150685

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                          
Query: 229    acctggcctanttctggatnctggactacagtaccattacagnagaattcctttttgaga 288
              |||||||| |  |||||||  |||| |||||||||||| ||| ||||||||||||| |||
Sbjct: 109181 acctggccaagctctggatcttggagtacagtaccattgcagcagaattcctttttcaga 109240

                      
Query: 289    tccttgag 296
              || |||||
Sbjct: 109241 tcattgag 109248



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>emb|AJ249397.1|PPR249397 Phleum pratense mRNA for putative protein translation factor SUI
           (SUI1 gene), partial
          Length = 560

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                       
Query: 199 ttcttacnctgatcaccttggagttggatgacctggcctanttctggatnctggactaca 258
           ||||| | ||||||||| |||||||| ||||||||||| |  ||||| | |||||| || 
Sbjct: 221 ttcttcctctgatcaccctggagttgaatgacctggccaagctctgggtcctggacaact 162

                                                 
Query: 259 gtaccattacagnagaattcctttttgagatccttgag 296
           |||||||| ||| | || || || |||||||| |||||
Sbjct: 161 gtaccattgcagcaaaactctttcttgagatctttgag 124



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>ref|XM_478516.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 348

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 207 ctgatcaccttggagttggatgacctggcctanttctggatnctggactacagtaccatt 266
           ||||||||| || ||||| ||||||||||| |  ||||| | |||||| |||||||||||
Sbjct: 273 ctgatcaccctgaagttgaatgacctggccaagctctgggtcctggacaacagtaccatt 214

                                         
Query: 267 acagnagaattcctttttgagatccttgag 296
            ||| | || || || |||||||| |||||
Sbjct: 213 gcagcaaaactctttcttgagatctttgag 184



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>gb|AF380357.1|AF380357 Porteresia coarctata translational initiation factor eIF1 mRNA,
           complete cds
          Length = 773

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 207 ctgatcaccttggagttggatgacctggcctanttctggatnctggactacagtaccatt 266
           ||||||||| || ||||| ||||||||||| |  ||||| | |||||| |||||||||||
Sbjct: 428 ctgatcaccctgaagttgaatgacctggccaagctctgggtcctggacaacagtaccatt 369

                                         
Query: 267 acagnagaattcctttttgagatccttgag 296
            ||| | || || || |||||||| |||||
Sbjct: 368 gcagcaaaactctttcttgagatctttgag 339



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>dbj|AK120697.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170I05, full
           insert sequence
          Length = 752

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 207 ctgatcaccttggagttggatgacctggcctanttctggatnctggactacagtaccatt 266
           ||||||||| || ||||| ||||||||||| |  ||||| | |||||| |||||||||||
Sbjct: 451 ctgatcaccctgaagttgaatgacctggccaagctctgggtcctggacaacagtaccatt 392

                                         
Query: 267 acagnagaattcctttttgagatccttgag 296
            ||| | || || || |||||||| |||||
Sbjct: 391 gcagcaaaactctttcttgagatctttgag 362



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>dbj|AK105037.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C07, full
           insert sequence
          Length = 1275

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 207 ctgatcaccttggagttggatgacctggcctanttctggatnctggactacagtaccatt 266
           ||||||||| || ||||| ||||||||||| |  ||||| | |||||| |||||||||||
Sbjct: 974 ctgatcaccctgaagttgaatgacctggccaagctctgggtcctggacaacagtaccatt 915

                                         
Query: 267 acagnagaattcctttttgagatccttgag 296
            ||| | || || || |||||||| |||||
Sbjct: 914 gcagcaaaactctttcttgagatctttgag 885



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>gb|AF094774.1|AF094774 Oryza sativa translation initiation factor (GOS2) mRNA, complete
           cds
          Length = 744

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 207 ctgatcaccttggagttggatgacctggcctanttctggatnctggactacagtaccatt 266
           ||||||||| || ||||| ||||||||||| |  ||||| | |||||| |||||||||||
Sbjct: 431 ctgatcaccctgaagttgaatgacctggccaagctctgggtcctggacaacagtaccatt 372

                                         
Query: 267 acagnagaattcctttttgagatccttgag 296
            ||| | || || || |||||||| |||||
Sbjct: 371 gcagcaaaactctttcttgagatctttgag 342



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>emb|AJ519840.1|CAR519840 Coffea arabica sui1 gene, exons 1-5
          Length = 2677

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 195  aacattcttacnctgatcaccttggagttggatgacct 232
            ||||||||||| |||||| ||||||||||| |||||||
Sbjct: 2246 aacattcttacgctgatccccttggagttgaatgacct 2209



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 34/39 (87%)
 Strand = Plus / Minus

                                                   
Query: 228  gacctggcctanttctggatnctggactacagtaccatt 266
            ||||||||||| |||||| |  ||||| |||||||||||
Sbjct: 2127 gacctggcctagttctgggtcttggacaacagtaccatt 2089



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>emb|AJ309088.1|PPI309088 Pinus pinaster partial mRNA for putative translation factor
          Length = 635

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 130/168 (77%)
 Strand = Plus / Minus

                                                                       
Query: 136 aatccgtgaatcttgatactctctttctttgcaagtccagcctgcactagaaatgtagca 195
           |||||||||||||| ||| | || || ||  ||| ||||||||| || || ||  | | |
Sbjct: 532 aatccgtgaatctttatattgtcctttttcacaattccagcctgtacaaggaaatttgaa 473

                                                                       
Query: 196 acattcttacnctgatcaccttggagttggatgacctggcctanttctggatnctggact 255
           ||||| ||||  |||||||| || || || || ||||| || | ||| |||| ||| || 
Sbjct: 472 acatttttacgttgatcaccctgtagctgaatcacctgcccaagttcaggatcctgcaca 413

                                                           
Query: 256 acagtaccattacagnagaattcctttttgagatccttgagaatnttg 303
           ||||| ||||||||  | ||||| |||||||| || |||||||| |||
Sbjct: 412 acagtcccattacaacaaaattcttttttgaggtctttgagaattttg 365



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>gb|DQ083223.1| Oryza sativa (indica cultivar-group) clone 5B12A69 mRNA sequence
          Length = 209

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 51/62 (82%)
 Strand = Plus / Minus

                                                                       
Query: 199 ttcttacnctgatcaccttggagttggatgacctggcctanttctggatnctggactaca 258
           ||||| | ||||||||| || ||||| ||||||||||| |  ||||| | |||||| |||
Sbjct: 62  ttcttcctctgatcaccctgaagttgaatgacctggccaagctctgggtcctggacaaca 3

             
Query: 259 gt 260
           ||
Sbjct: 2   gt 1



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>gb|AC150773.2| Xenopus tropicalis clone CH216-69F7, complete sequence
          Length = 115925

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 147   cttgatactctctttctttgcaagt 171
             |||||| ||||||||||||||||||
Sbjct: 74553 cttgattctctctttctttgcaagt 74577



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>gb|AC124722.3| Mus musculus BAC clone RP23-389E7 from chromosome 6, complete sequence
          Length = 193830

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    tccgtgaatcttgatactct 157
              ||||||||||||||||||||
Sbjct: 107099 tccgtgaatcttgatactct 107118



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>gb|AC097512.2| Homo sapiens BAC clone RP11-412P11 from 4, complete sequence
          Length = 149282

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  atttgagtgttgcctaaaat 138
            ||||||||||||||||||||
Sbjct: 6346 atttgagtgttgcctaaaat 6327



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>gb|AC090648.5| Genomic sequence for Mus musculus, clone RP23-331I23, complete sequence
          Length = 198695

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   tccgtgaatcttgatactct 157
             ||||||||||||||||||||
Sbjct: 87691 tccgtgaatcttgatactct 87672



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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 124     agtgttgcctaaaatccgtg 143
               ||||||||||||||||||||
Sbjct: 1712792 agtgttgcctaaaatccgtg 1712773


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,307,281
Number of Sequences: 3902068
Number of extensions: 2307281
Number of successful extensions: 35264
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 35192
Number of HSP's gapped (non-prelim): 72
length of query: 303
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 281
effective length of database: 17,147,199,772
effective search space: 4818363135932
effective search space used: 4818363135932
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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