| Clone Name | rbaal8p13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190883.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 360 Score = 161 bits (81), Expect = 2e-36 Identities = 150/173 (86%), Gaps = 1/173 (0%) Strand = Plus / Minus Query: 125 gtgttgcctaaaatccgtgaatcttgatactctctttctttgcaagtccagcc-tgcact 183 |||| |||||||| ||||| || ||||| |||||||||||| ||| ||||||| || ||| Sbjct: 356 gtgtagcctaaaacccgtgtattttgatgctctctttctttacaattccagccctgaact 297 Query: 184 agaaatgtagcaacattcttacnctgatcaccttggagttggatgacctggcctanttct 243 || || || |||||||| |||| |||||||||||| ||||| ||||||||||||| ||| Sbjct: 296 aggaacgtcgcaacatttttacgctgatcaccttgaagttgaatgacctggcctaactct 237 Query: 244 ggatnctggactacagtaccattacagnagaattcctttttgagatccttgag 296 |||| |||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct: 236 ggatcttggactacagtaccattacaacagaattcctttttcagatccttgag 184
>gb|AY108531.1| Zea mays PCO112988 mRNA sequence Length = 792 Score = 161 bits (81), Expect = 2e-36 Identities = 143/165 (86%) Strand = Plus / Minus Query: 132 ctaaaatccgtgaatcttgatactctctttctttgcaagtccagcctgcactagaaatgt 191 ||||||||||||||||||||| || ||||| || | | ||| ||||| |||||||| || Sbjct: 520 ctaaaatccgtgaatcttgatgctatcttttttcacgattccggcctggactagaaaagt 461 Query: 192 agcaacattcttacnctgatcaccttggagttggatgacctggcctanttctggatnctg 251 ||| ||||| |||| |||||||||||| ||||| ||||||||||||| ||||||| ||| Sbjct: 460 agcgacatttttacgctgatcaccttgcagttgaatgacctggcctagctctggatcctg 401 Query: 252 gactacagtaccattacagnagaattcctttttgagatccttgag 296 ||||||||||||||| ||| |||| || ||||||||||||||||| Sbjct: 400 gactacagtaccattgcagcagaactcttttttgagatccttgag 356
>gb|AY104121.1| Zea mays PCO141133 mRNA sequence Length = 815 Score = 147 bits (74), Expect = 2e-32 Identities = 136/158 (86%) Strand = Plus / Minus Query: 139 ccgtgaatcttgatactctctttctttgcaagtccagcctgcactagaaatgtagcaaca 198 |||||||||||||| |||||||||| |||| |||||||| ||||| || ||||||||| Sbjct: 506 ccgtgaatcttgatgttctctttcttcgcaatcccagcctgaactaggaaagtagcaaca 447 Query: 199 ttcttacnctgatcaccttggagttggatgacctggcctanttctggatnctggactaca 258 ||||| | ||| ||||||||||| || ||||||||||||| ||||| | ||| |||||| Sbjct: 446 ttcttgcgctggtcaccttggagctgaatgacctggcctagctctgggtcctgaactaca 387 Query: 259 gtaccattacagnagaattcctttttgagatccttgag 296 |||||||| ||| |||||||||| || ||||||||||| Sbjct: 386 gtaccattgcagcagaattccttcttcagatccttgag 349
>ref|XM_475493.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 348 Score = 131 bits (66), Expect = 1e-27 Identities = 134/158 (84%) Strand = Plus / Minus Query: 139 ccgtgaatcttgatactctctttctttgcaagtccagcctgcactagaaatgtagcaaca 198 |||||||||||||| | || ||||| |||| |||||||| ||||| || || |||||| Sbjct: 341 ccgtgaatcttgatgttgtccttcttagcaatcccagcctgaactaggaacgtggcaaca 282 Query: 199 ttcttacnctgatcaccttggagttggatgacctggcctanttctggatnctggactaca 258 ||||||| |||||||||||| || || ||||||||||| | ||||||| ||||||||| Sbjct: 281 ttcttacgctgatcaccttgaagctgaatgacctggccaagctctggatcttggactaca 222 Query: 259 gtaccattacagnagaattcctttttgagatccttgag 296 |||||||| ||| |||| |||||||| ||||||||||| Sbjct: 221 gtaccattgcagcagaactcctttttcagatccttgag 184
>dbj|AK070301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049M22, full insert sequence Length = 1410 Score = 131 bits (66), Expect = 1e-27 Identities = 134/158 (84%) Strand = Plus / Minus Query: 139 ccgtgaatcttgatactctctttctttgcaagtccagcctgcactagaaatgtagcaaca 198 |||||||||||||| | || ||||| |||| |||||||| ||||| || || |||||| Sbjct: 1178 ccgtgaatcttgatgttgtccttcttagcaatcccagcctgaactaggaacgtggcaaca 1119 Query: 199 ttcttacnctgatcaccttggagttggatgacctggcctanttctggatnctggactaca 258 ||||||| |||||||||||| || || ||||||||||| | ||||||| ||||||||| Sbjct: 1118 ttcttacgctgatcaccttgaagctgaatgacctggccaagctctggatcttggactaca 1059 Query: 259 gtaccattacagnagaattcctttttgagatccttgag 296 |||||||| ||| |||| |||||||| ||||||||||| Sbjct: 1058 gtaccattgcagcagaactcctttttcagatccttgag 1021
>dbj|AK058219.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F05, full insert sequence Length = 731 Score = 131 bits (66), Expect = 1e-27 Identities = 134/158 (84%) Strand = Plus / Minus Query: 139 ccgtgaatcttgatactctctttctttgcaagtccagcctgcactagaaatgtagcaaca 198 |||||||||||||| | || ||||| |||| |||||||| ||||| || || |||||| Sbjct: 499 ccgtgaatcttgatgttgtccttcttagcaatcccagcctgaactaggaacgtggcaaca 440 Query: 199 ttcttacnctgatcaccttggagttggatgacctggcctanttctggatnctggactaca 258 ||||||| |||||||||||| || || ||||||||||| | ||||||| ||||||||| Sbjct: 439 ttcttacgctgatcaccttgaagctgaatgacctggccaagctctggatcttggactaca 380 Query: 259 gtaccattacagnagaattcctttttgagatccttgag 296 |||||||| ||| |||| |||||||| ||||||||||| Sbjct: 379 gtaccattgcagcagaactcctttttcagatccttgag 342
>gb|BT013323.1| Lycopersicon esculentum clone 135043R, mRNA sequence Length = 787 Score = 101 bits (51), Expect = 1e-18 Identities = 84/96 (87%) Strand = Plus / Minus Query: 171 tccagcctgcactagaaatgtagcaacattcttacnctgatcaccttggagttggatgac 230 ||||||||| || |||||||||| ||| ||||| | ||||||||| |||||||| || || Sbjct: 472 tccagcctggacaagaaatgtagaaacgttctttctctgatcaccctggagttgaataac 413 Query: 231 ctggcctanttctggatnctggactacagtaccatt 266 |||||||| |||||||| |||||| ||||||||||| Sbjct: 412 ctggcctagttctggatcctggacaacagtaccatt 377
>gb|BT013262.1| Lycopersicon esculentum clone 134804F, mRNA sequence Length = 1343 Score = 93.7 bits (47), Expect = 3e-16 Identities = 103/123 (83%) Strand = Plus / Minus Query: 171 tccagcctgcactagaaatgtagcaacattcttacnctgatcaccttggagttggatgac 230 ||||||||| || ||||| |||| ||| ||||| | ||| ||||| || ||||| || || Sbjct: 1075 tccagcctggacaagaaaggtagaaacgttcttcctctggtcaccctgaagttgaataac 1016 Query: 231 ctggcctanttctggatnctggactacagtaccattacagnagaattcctttttgagatc 290 |||||||| ||| |||| |||||| ||||||||||| ||| ||||||| || |||||||| Sbjct: 1015 ctggcctagttcaggatcctggacaacagtaccattgcagcagaattctttcttgagatc 956 Query: 291 ctt 293 ||| Sbjct: 955 ctt 953
>emb|AJ519839.1|CAR519839 Coffea arabica mRNA for SUI1 protein Length = 678 Score = 85.7 bits (43), Expect = 7e-14 Identities = 64/72 (88%) Strand = Plus / Minus Query: 195 aacattcttacnctgatcaccttggagttggatgacctggcctanttctggatnctggac 254 ||||||||||| |||||| ||||||||||| ||||||||||||| |||||| | ||||| Sbjct: 413 aacattcttacgctgatccccttggagttgaatgacctggcctagttctgggtcttggac 354 Query: 255 tacagtaccatt 266 ||||||||||| Sbjct: 353 aacagtaccatt 342
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 85.7 bits (43), Expect = 7e-14 Identities = 61/68 (89%) Strand = Plus / Plus Query: 229 acctggcctanttctggatnctggactacagtaccattacagnagaattcctttttgaga 288 |||||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| Sbjct: 33644913 acctggcctaactctggatcttggactacagtaccattacaacagaattcctttttcaga 33644972 Query: 289 tccttgag 296 |||||||| Sbjct: 33644973 tccttgag 33644980 Score = 54.0 bits (27), Expect = 3e-04 Identities = 50/58 (86%) Strand = Plus / Plus Query: 176 cctgcactagaaatgtagcaacattcttacnctgatcaccttggagttggatgacctg 233 |||| ||||| || || |||||||| |||| |||||||||||| ||||| |||||||| Sbjct: 33644768 cctgaactaggaacgtcgcaacatttttacgctgatcaccttgaagttgaatgacctg 33644825 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Plus Query: 125 gtgttgcctaaaatccgtgaatcttgatactctctttctttgcaagtccagcct 178 |||| |||||||| ||||| || ||||| |||||||||||| ||| |||||||| Sbjct: 33644640 gtgtagcctaaaacccgtgtattttgatgctctctttctttacaattccagcct 33644693
>dbj|AP003290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684C02 Length = 80086 Score = 85.7 bits (43), Expect = 7e-14 Identities = 61/68 (89%) Strand = Plus / Plus Query: 229 acctggcctanttctggatnctggactacagtaccattacagnagaattcctttttgaga 288 |||||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| Sbjct: 59785 acctggcctaactctggatcttggactacagtaccattacaacagaattcctttttcaga 59844 Query: 289 tccttgag 296 |||||||| Sbjct: 59845 tccttgag 59852 Score = 54.0 bits (27), Expect = 3e-04 Identities = 50/58 (86%) Strand = Plus / Plus Query: 176 cctgcactagaaatgtagcaacattcttacnctgatcaccttggagttggatgacctg 233 |||| ||||| || || |||||||| |||| |||||||||||| ||||| |||||||| Sbjct: 59640 cctgaactaggaacgtcgcaacatttttacgctgatcaccttgaagttgaatgacctg 59697 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Plus Query: 125 gtgttgcctaaaatccgtgaatcttgatactctctttctttgcaagtccagcct 178 |||| |||||||| ||||| || ||||| |||||||||||| ||| |||||||| Sbjct: 59512 gtgtagcctaaaacccgtgtattttgatgctctctttctttacaattccagcct 59565
>gb|DQ222518.1| Solanum tuberosum clone 120A06 unknown mRNA Length = 699 Score = 83.8 bits (42), Expect = 3e-13 Identities = 113/138 (81%) Strand = Plus / Minus Query: 156 ctctttctttgcaagtccagcctgcactagaaatgtagcaacattcttacnctgatcacc 215 ||||||||| ||| ||||||||| || |||||||||| ||| ||||| | ||| ||| | Sbjct: 463 ctctttcttcacaattccagcctggacaagaaatgtagaaacgttcttccgctggtcatc 404 Query: 216 ttggagttggatgacctggcctanttctggatnctggactacagtaccattacagnagaa 275 || ||||| || |||||||||| ||| |||| ||| || ||||||||||| ||| |||| Sbjct: 403 ctgaagttgaataacctggcctagttcaggatcctgaacgacagtaccattgcagcagaa 344 Query: 276 ttcctttttgagatcctt 293 || || ||||||||||| Sbjct: 343 ctctttcttgagatcctt 326
>gb|AC130605.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0010D04, complete sequence Length = 122599 Score = 69.9 bits (35), Expect = 4e-09 Identities = 59/68 (86%) Strand = Plus / Minus Query: 229 acctggcctanttctggatnctggactacagtaccattacagnagaattcctttttgaga 288 |||||||| | ||||||| ||||||||||||||||| ||| |||| |||||||| ||| Sbjct: 79955 acctggccaagctctggatcttggactacagtaccattgcagcagaactcctttttcaga 79896 Query: 289 tccttgag 296 |||||||| Sbjct: 79895 tccttgag 79888 Score = 54.0 bits (27), Expect = 3e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 176 cctgcactagaaatgtagcaacattcttacnctgatcaccttggagttggatgacctg 233 |||| ||||| || || ||||||||||||| |||||||||||| || || |||||||| Sbjct: 80087 cctgaactaggaacgtggcaacattcttacgctgatcaccttgaagctgaatgacctg 80030
>gb|AY365040.1| Zea mays translation initiation factor-like gene, partial sequence Length = 656 Score = 69.9 bits (35), Expect = 4e-09 Identities = 59/68 (86%) Strand = Plus / Minus Query: 229 acctggcctanttctggatnctggactacagtaccattacagnagaattcctttttgaga 288 |||||||||| ||||| | ||| |||||||||||||| ||| |||||||||| || ||| Sbjct: 551 acctggcctagctctgggtcctgaactacagtaccattgcagcagaattccttcttcaga 492 Query: 289 tccttgag 296 |||||||| Sbjct: 491 tccttgag 484
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 69.9 bits (35), Expect = 4e-09 Identities = 59/68 (86%) Strand = Plus / Minus Query: 229 acctggcctanttctggatnctggactacagtaccattacagnagaattcctttttgaga 288 |||||||| | ||||||| ||||||||||||||||| ||| |||| |||||||| ||| Sbjct: 24394165 acctggccaagctctggatcttggactacagtaccattgcagcagaactcctttttcaga 24394106 Query: 289 tccttgag 296 |||||||| Sbjct: 24394105 tccttgag 24394098 Score = 54.0 bits (27), Expect = 3e-04 Identities = 50/58 (86%) Strand = Plus / Minus Query: 176 cctgcactagaaatgtagcaacattcttacnctgatcaccttggagttggatgacctg 233 |||| ||||| || || ||||||||||||| |||||||||||| || || |||||||| Sbjct: 24394297 cctgaactaggaacgtggcaacattcttacgctgatcaccttgaagctgaatgacctg 24394240
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 61.9 bits (31), Expect = 1e-06 Identities = 58/68 (85%) Strand = Plus / Plus Query: 229 acctggcctanttctggatnctggactacagtaccattacagnagaattcctttttgaga 288 |||||||| | ||||||| |||| |||||||||||| ||| ||||||||||||| ||| Sbjct: 2840953 acctggccaagctctggatcttggagtacagtaccattgcagcagaattcctttttcaga 2841012 Query: 289 tccttgag 296 || ||||| Sbjct: 2841013 tcattgag 2841020
>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13 Length = 150685 Score = 61.9 bits (31), Expect = 1e-06 Identities = 58/68 (85%) Strand = Plus / Plus Query: 229 acctggcctanttctggatnctggactacagtaccattacagnagaattcctttttgaga 288 |||||||| | ||||||| |||| |||||||||||| ||| ||||||||||||| ||| Sbjct: 109181 acctggccaagctctggatcttggagtacagtaccattgcagcagaattcctttttcaga 109240 Query: 289 tccttgag 296 || ||||| Sbjct: 109241 tcattgag 109248
>emb|AJ249397.1|PPR249397 Phleum pratense mRNA for putative protein translation factor SUI (SUI1 gene), partial Length = 560 Score = 60.0 bits (30), Expect = 4e-06 Identities = 80/98 (81%) Strand = Plus / Minus Query: 199 ttcttacnctgatcaccttggagttggatgacctggcctanttctggatnctggactaca 258 ||||| | ||||||||| |||||||| ||||||||||| | ||||| | |||||| || Sbjct: 221 ttcttcctctgatcaccctggagttgaatgacctggccaagctctgggtcctggacaact 162 Query: 259 gtaccattacagnagaattcctttttgagatccttgag 296 |||||||| ||| | || || || |||||||| ||||| Sbjct: 161 gtaccattgcagcaaaactctttcttgagatctttgag 124
>ref|XM_478516.1| Oryza sativa (japonica cultivar-group), mRNA Length = 348 Score = 58.0 bits (29), Expect = 2e-05 Identities = 74/90 (82%) Strand = Plus / Minus Query: 207 ctgatcaccttggagttggatgacctggcctanttctggatnctggactacagtaccatt 266 ||||||||| || ||||| ||||||||||| | ||||| | |||||| ||||||||||| Sbjct: 273 ctgatcaccctgaagttgaatgacctggccaagctctgggtcctggacaacagtaccatt 214 Query: 267 acagnagaattcctttttgagatccttgag 296 ||| | || || || |||||||| ||||| Sbjct: 213 gcagcaaaactctttcttgagatctttgag 184
>gb|AF380357.1|AF380357 Porteresia coarctata translational initiation factor eIF1 mRNA, complete cds Length = 773 Score = 58.0 bits (29), Expect = 2e-05 Identities = 74/90 (82%) Strand = Plus / Minus Query: 207 ctgatcaccttggagttggatgacctggcctanttctggatnctggactacagtaccatt 266 ||||||||| || ||||| ||||||||||| | ||||| | |||||| ||||||||||| Sbjct: 428 ctgatcaccctgaagttgaatgacctggccaagctctgggtcctggacaacagtaccatt 369 Query: 267 acagnagaattcctttttgagatccttgag 296 ||| | || || || |||||||| ||||| Sbjct: 368 gcagcaaaactctttcttgagatctttgag 339
>dbj|AK120697.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170I05, full insert sequence Length = 752 Score = 58.0 bits (29), Expect = 2e-05 Identities = 74/90 (82%) Strand = Plus / Minus Query: 207 ctgatcaccttggagttggatgacctggcctanttctggatnctggactacagtaccatt 266 ||||||||| || ||||| ||||||||||| | ||||| | |||||| ||||||||||| Sbjct: 451 ctgatcaccctgaagttgaatgacctggccaagctctgggtcctggacaacagtaccatt 392 Query: 267 acagnagaattcctttttgagatccttgag 296 ||| | || || || |||||||| ||||| Sbjct: 391 gcagcaaaactctttcttgagatctttgag 362
>dbj|AK105037.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C07, full insert sequence Length = 1275 Score = 58.0 bits (29), Expect = 2e-05 Identities = 74/90 (82%) Strand = Plus / Minus Query: 207 ctgatcaccttggagttggatgacctggcctanttctggatnctggactacagtaccatt 266 ||||||||| || ||||| ||||||||||| | ||||| | |||||| ||||||||||| Sbjct: 974 ctgatcaccctgaagttgaatgacctggccaagctctgggtcctggacaacagtaccatt 915 Query: 267 acagnagaattcctttttgagatccttgag 296 ||| | || || || |||||||| ||||| Sbjct: 914 gcagcaaaactctttcttgagatctttgag 885
>gb|AF094774.1|AF094774 Oryza sativa translation initiation factor (GOS2) mRNA, complete cds Length = 744 Score = 58.0 bits (29), Expect = 2e-05 Identities = 74/90 (82%) Strand = Plus / Minus Query: 207 ctgatcaccttggagttggatgacctggcctanttctggatnctggactacagtaccatt 266 ||||||||| || ||||| ||||||||||| | ||||| | |||||| ||||||||||| Sbjct: 431 ctgatcaccctgaagttgaatgacctggccaagctctgggtcctggacaacagtaccatt 372 Query: 267 acagnagaattcctttttgagatccttgag 296 ||| | || || || |||||||| ||||| Sbjct: 371 gcagcaaaactctttcttgagatctttgag 342
>emb|AJ519840.1|CAR519840 Coffea arabica sui1 gene, exons 1-5 Length = 2677 Score = 54.0 bits (27), Expect = 3e-04 Identities = 35/38 (92%) Strand = Plus / Minus Query: 195 aacattcttacnctgatcaccttggagttggatgacct 232 ||||||||||| |||||| ||||||||||| ||||||| Sbjct: 2246 aacattcttacgctgatccccttggagttgaatgacct 2209 Score = 42.1 bits (21), Expect = 1.0 Identities = 34/39 (87%) Strand = Plus / Minus Query: 228 gacctggcctanttctggatnctggactacagtaccatt 266 ||||||||||| |||||| | ||||| ||||||||||| Sbjct: 2127 gacctggcctagttctgggtcttggacaacagtaccatt 2089
>emb|AJ309088.1|PPI309088 Pinus pinaster partial mRNA for putative translation factor Length = 635 Score = 42.1 bits (21), Expect = 1.0 Identities = 130/168 (77%) Strand = Plus / Minus Query: 136 aatccgtgaatcttgatactctctttctttgcaagtccagcctgcactagaaatgtagca 195 |||||||||||||| ||| | || || || ||| ||||||||| || || || | | | Sbjct: 532 aatccgtgaatctttatattgtcctttttcacaattccagcctgtacaaggaaatttgaa 473 Query: 196 acattcttacnctgatcaccttggagttggatgacctggcctanttctggatnctggact 255 ||||| |||| |||||||| || || || || ||||| || | ||| |||| ||| || Sbjct: 472 acatttttacgttgatcaccctgtagctgaatcacctgcccaagttcaggatcctgcaca 413 Query: 256 acagtaccattacagnagaattcctttttgagatccttgagaatnttg 303 ||||| |||||||| | ||||| |||||||| || |||||||| ||| Sbjct: 412 acagtcccattacaacaaaattcttttttgaggtctttgagaattttg 365
>gb|DQ083223.1| Oryza sativa (indica cultivar-group) clone 5B12A69 mRNA sequence Length = 209 Score = 42.1 bits (21), Expect = 1.0 Identities = 51/62 (82%) Strand = Plus / Minus Query: 199 ttcttacnctgatcaccttggagttggatgacctggcctanttctggatnctggactaca 258 ||||| | ||||||||| || ||||| ||||||||||| | ||||| | |||||| ||| Sbjct: 62 ttcttcctctgatcaccctgaagttgaatgacctggccaagctctgggtcctggacaaca 3 Query: 259 gt 260 || Sbjct: 2 gt 1
>gb|AC150773.2| Xenopus tropicalis clone CH216-69F7, complete sequence Length = 115925 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 147 cttgatactctctttctttgcaagt 171 |||||| |||||||||||||||||| Sbjct: 74553 cttgattctctctttctttgcaagt 74577
>gb|AC124722.3| Mus musculus BAC clone RP23-389E7 from chromosome 6, complete sequence Length = 193830 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 tccgtgaatcttgatactct 157 |||||||||||||||||||| Sbjct: 107099 tccgtgaatcttgatactct 107118
>gb|AC097512.2| Homo sapiens BAC clone RP11-412P11 from 4, complete sequence Length = 149282 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 atttgagtgttgcctaaaat 138 |||||||||||||||||||| Sbjct: 6346 atttgagtgttgcctaaaat 6327
>gb|AC090648.5| Genomic sequence for Mus musculus, clone RP23-331I23, complete sequence Length = 198695 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 tccgtgaatcttgatactct 157 |||||||||||||||||||| Sbjct: 87691 tccgtgaatcttgatactct 87672
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 agtgttgcctaaaatccgtg 143 |||||||||||||||||||| Sbjct: 1712792 agtgttgcctaaaatccgtg 1712773 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,307,281 Number of Sequences: 3902068 Number of extensions: 2307281 Number of successful extensions: 35264 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 35192 Number of HSP's gapped (non-prelim): 72 length of query: 303 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 281 effective length of database: 17,147,199,772 effective search space: 4818363135932 effective search space used: 4818363135932 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)