| Clone Name | bags10d04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK105944.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C03, full insert sequence Length = 1715 Score = 690 bits (348), Expect = 0.0 Identities = 496/544 (91%), Gaps = 1/544 (0%) Strand = Plus / Plus Query: 26 cgccttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggc 85 ||||||||| ||||||||||| || ||||| |||||||||||||| ||||||||||| | Sbjct: 193 cgccttcccgtactacctcctcgtcgcgctcgaggccggcagcgtgctccgcgccgtcgt 252 Query: 86 gctgctcctgtcggtgccgttcgtgtacgtgacctacatcttcttctccgagtcgctggc 145 |||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct: 253 gctgctgctgtccgtgccgttcgtctacgtgacctacattttcttctccgagtcgctggc 312 Query: 146 catcagcaccctggtgtacatctccgtggccgggctcaaggtgaggagcatcgagatggc 205 ||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct: 313 catcagcacgctggtgtacatctccgtggcggggctcaaggtgaggaacatcgagatggt 372 Query: 206 ggcgcggtcggtgctgcccaagttctacgcgcaggatgtccacccggagagctggagggt 265 ||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||| Sbjct: 373 ggcgcggtcggtgctgcccaagttctacgcggaggacgtgcacccggagagctggagggt 432 Query: 266 gttcaggtccttcggcaagcggtacatcatcacggccagccccaggatcatggtggagcc 325 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 433 gttcaactccttcggcaagcggtacatcatcacggcgagccccaggatcatggtggagca 492 Query: 326 cttcgccagggagttcctcggtgccgacagggtggtgggcacggagctggaggtcggcaa 385 |||||||| | ||||||||| ||||||| |||||| || |||||||||||||||||||| Sbjct: 493 cttcgccaagacgttcctcggcgccgacaaggtggtcgggacggagctggaggtcggcaa 552 Query: 386 gtccggcaaggccacggggttcatggtgaagcccggggtgctcgtcggcgagcacaagaa 445 | ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct: 553 gaacggcaaggccacggggttcatggtgaagcccggagtgctcgtgggcgaccacaagag 612 Query: 446 gcaggcccgtcgtcaaggagctgggcgacgcggtgccagacgtcggcatgggcgacaggg 505 ||||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||||| Sbjct: 613 gcagg-ccgtcgtcaaggagctacgcgacgcggtgcccgacgtcggcttgggcgacaggg 671 Query: 506 ccaccgatttcaacttcatgtccatatgcaaggaagcctaccttgtgacgtcgaggaagt 565 || |||||| |||||||||||||||||||||| |||||||| ||||| || ||||||| Sbjct: 672 agacggatttcgacttcatgtccatatgcaaggaggcctacctcgtgacatcaaggaagt 731 Query: 566 acag 569 |||| Sbjct: 732 acag 735
>dbj|AK070880.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064I03, full insert sequence Length = 3618 Score = 690 bits (348), Expect = 0.0 Identities = 496/544 (91%), Gaps = 1/544 (0%) Strand = Plus / Plus Query: 26 cgccttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggc 85 ||||||||| ||||||||||| || ||||| |||||||||||||| ||||||||||| | Sbjct: 2059 cgccttcccgtactacctcctcgtcgcgctcgaggccggcagcgtgctccgcgccgtcgt 2118 Query: 86 gctgctcctgtcggtgccgttcgtgtacgtgacctacatcttcttctccgagtcgctggc 145 |||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct: 2119 gctgctgctgtccgtgccgttcgtctacgtgacctacattttcttctccgagtcgctggc 2178 Query: 146 catcagcaccctggtgtacatctccgtggccgggctcaaggtgaggagcatcgagatggc 205 ||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct: 2179 catcagcacgctggtgtacatctccgtggcggggctcaaggtgaggaacatcgagatggt 2238 Query: 206 ggcgcggtcggtgctgcccaagttctacgcgcaggatgtccacccggagagctggagggt 265 ||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||| Sbjct: 2239 ggcgcggtcggtgctgcccaagttctacgcggaggacgtgcacccggagagctggagggt 2298 Query: 266 gttcaggtccttcggcaagcggtacatcatcacggccagccccaggatcatggtggagcc 325 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 2299 gttcaactccttcggcaagcggtacatcatcacggcgagccccaggatcatggtggagca 2358 Query: 326 cttcgccagggagttcctcggtgccgacagggtggtgggcacggagctggaggtcggcaa 385 |||||||| | ||||||||| ||||||| |||||| || |||||||||||||||||||| Sbjct: 2359 cttcgccaagacgttcctcggcgccgacaaggtggtcgggacggagctggaggtcggcaa 2418 Query: 386 gtccggcaaggccacggggttcatggtgaagcccggggtgctcgtcggcgagcacaagaa 445 | ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct: 2419 gaacggcaaggccacggggttcatggtgaagcccggagtgctcgtgggcgaccacaagag 2478 Query: 446 gcaggcccgtcgtcaaggagctgggcgacgcggtgccagacgtcggcatgggcgacaggg 505 ||||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||||| Sbjct: 2479 gcagg-ccgtcgtcaaggagctacgcgacgcggtgcccgacgtcggcttgggcgacaggg 2537 Query: 506 ccaccgatttcaacttcatgtccatatgcaaggaagcctaccttgtgacgtcgaggaagt 565 || |||||| |||||||||||||||||||||| |||||||| ||||| || ||||||| Sbjct: 2538 agacggatttcgacttcatgtccatatgcaaggaggcctacctcgtgacatcaaggaagt 2597 Query: 566 acag 569 |||| Sbjct: 2598 acag 2601
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 660 bits (333), Expect = 0.0 Identities = 469/513 (91%), Gaps = 1/513 (0%) Strand = Plus / Minus Query: 26 cgccttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggc 85 ||||||||| ||||||||||| || ||||| |||||||||||||| ||||||||||| | Sbjct: 36859442 cgccttcccgtactacctcctcgtcgcgctcgaggccggcagcgtgctccgcgccgtcgt 36859383 Query: 86 gctgctcctgtcggtgccgttcgtgtacgtgacctacatcttcttctccgagtcgctggc 145 |||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct: 36859382 gctgctgctgtccgtgccgttcgtctacgtgacctacattttcttctccgagtcgctggc 36859323 Query: 146 catcagcaccctggtgtacatctccgtggccgggctcaaggtgaggagcatcgagatggc 205 ||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct: 36859322 catcagcacgctggtgtacatctccgtggcggggctcaaggtgaggaacatcgagatggt 36859263 Query: 206 ggcgcggtcggtgctgcccaagttctacgcgcaggatgtccacccggagagctggagggt 265 ||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||| Sbjct: 36859262 ggcgcggtcggtgctgcccaagttctacgcggaggacgtgcacccggagagctggagggt 36859203 Query: 266 gttcaggtccttcggcaagcggtacatcatcacggccagccccaggatcatggtggagcc 325 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 36859202 gttcaactccttcggcaagcggtacatcatcacggcgagccccaggatcatggtggagca 36859143 Query: 326 cttcgccagggagttcctcggtgccgacagggtggtgggcacggagctggaggtcggcaa 385 |||||||| | ||||||||| ||||||| |||||| || |||||||||||||||||||| Sbjct: 36859142 cttcgccaagacgttcctcggcgccgacaaggtggtcgggacggagctggaggtcggcaa 36859083 Query: 386 gtccggcaaggccacggggttcatggtgaagcccggggtgctcgtcggcgagcacaagaa 445 | ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct: 36859082 gaacggcaaggccacggggttcatggtgaagcccggagtgctcgtgggcgaccacaagag 36859023 Query: 446 gcaggcccgtcgtcaaggagctgggcgacgcggtgccagacgtcggcatgggcgacaggg 505 ||||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||||| Sbjct: 36859022 gcagg-ccgtcgtcaaggagctacgcgacgcggtgcccgacgtcggcttgggcgacaggg 36858964 Query: 506 ccaccgatttcaacttcatgtccatatgcaagg 538 || |||||| ||||||||||||||||||||| Sbjct: 36858963 agacggatttcgacttcatgtccatatgcaagg 36858931
>dbj|AP003442.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1096A10 Length = 150976 Score = 660 bits (333), Expect = 0.0 Identities = 469/513 (91%), Gaps = 1/513 (0%) Strand = Plus / Minus Query: 26 cgccttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggc 85 ||||||||| ||||||||||| || ||||| |||||||||||||| ||||||||||| | Sbjct: 75020 cgccttcccgtactacctcctcgtcgcgctcgaggccggcagcgtgctccgcgccgtcgt 74961 Query: 86 gctgctcctgtcggtgccgttcgtgtacgtgacctacatcttcttctccgagtcgctggc 145 |||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct: 74960 gctgctgctgtccgtgccgttcgtctacgtgacctacattttcttctccgagtcgctggc 74901 Query: 146 catcagcaccctggtgtacatctccgtggccgggctcaaggtgaggagcatcgagatggc 205 ||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct: 74900 catcagcacgctggtgtacatctccgtggcggggctcaaggtgaggaacatcgagatggt 74841 Query: 206 ggcgcggtcggtgctgcccaagttctacgcgcaggatgtccacccggagagctggagggt 265 ||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||| Sbjct: 74840 ggcgcggtcggtgctgcccaagttctacgcggaggacgtgcacccggagagctggagggt 74781 Query: 266 gttcaggtccttcggcaagcggtacatcatcacggccagccccaggatcatggtggagcc 325 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 74780 gttcaactccttcggcaagcggtacatcatcacggcgagccccaggatcatggtggagca 74721 Query: 326 cttcgccagggagttcctcggtgccgacagggtggtgggcacggagctggaggtcggcaa 385 |||||||| | ||||||||| ||||||| |||||| || |||||||||||||||||||| Sbjct: 74720 cttcgccaagacgttcctcggcgccgacaaggtggtcgggacggagctggaggtcggcaa 74661 Query: 386 gtccggcaaggccacggggttcatggtgaagcccggggtgctcgtcggcgagcacaagaa 445 | ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct: 74660 gaacggcaaggccacggggttcatggtgaagcccggagtgctcgtgggcgaccacaagag 74601 Query: 446 gcaggcccgtcgtcaaggagctgggcgacgcggtgccagacgtcggcatgggcgacaggg 505 ||||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||||| Sbjct: 74600 gcagg-ccgtcgtcaaggagctacgcgacgcggtgcccgacgtcggcttgggcgacaggg 74542 Query: 506 ccaccgatttcaacttcatgtccatatgcaagg 538 || |||||| ||||||||||||||||||||| Sbjct: 74541 agacggatttcgacttcatgtccatatgcaagg 74509
>gb|AY105347.1| Zea mays PCO089398 mRNA sequence Length = 2225 Score = 547 bits (276), Expect = e-152 Identities = 475/540 (87%), Gaps = 1/540 (0%) Strand = Plus / Plus Query: 30 ttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctg 89 ||||||||||||||||| ||||| || ||||||||||||||||||||||||| | |||| Sbjct: 461 ttcccctactacctcctcgtggctctcgaggccggcagcgtcctccgcgccgcgctgctg 520 Query: 90 ctcctgtcggtgccgttcgtgtacgtgacctacatcttcttctccgagtcgctggccatc 149 |||||||| ||||||||||| ||||| |||||| ||||||||||||||||||||||||| Sbjct: 521 ctcctgtccgtgccgttcgtctacgtcacctacgccttcttctccgagtcgctggccatc 580 Query: 150 agcaccctggtgtacatctccgtggccgggctcaaggtgaggagcatcgagatggcggcg 209 ||||| |||||||||||||||||||| |||||||||||| | ||||||||||||| |||| Sbjct: 581 agcacgctggtgtacatctccgtggcggggctcaaggtgcgcagcatcgagatggtggcg 640 Query: 210 cggtcggtgctgcccaagttctacgcgcaggatgtccacccggagagctggagggtgttc 269 || || ||||| |||| |||||||||| || || |||||||||||||||||||||||| Sbjct: 641 cgctccgtgctccccaggttctacgcgggcgacgtgcacccggagagctggagggtgttc 700 Query: 270 aggtccttcggcaagcggtacatcatcacggccagccccaggatcatggtggagcccttc 329 || |||||||||| ||| ||| || ||||||||||||||||| ||||||| ||||||||| Sbjct: 701 agctccttcggcaggcgctacgtcgtcacggccagccccagggtcatggtcgagcccttc 760 Query: 330 gccagggagttcctcggtgccgacagggtggtgggcacggagctggaggtcggcaagtcc 389 ||||||| ||||| || ||||||| ||| || || || |||||||||||||||| | | Sbjct: 761 gccagggccttcctaggcgccgacaaggtcgtcgggaccgagctggaggtcggcagggac 820 Query: 390 ggcaaggccacggggttcatggtgaagcccggggtgctcgtcggcgagcacaagaagcag 449 |||||||||||||| ||||||| | ||| || |||||||||||||| ||||||||| || Sbjct: 821 ggcaaggccacgggcttcatggccaggccaggcgtgctcgtcggcgaccacaagaagaag 880 Query: 450 gcccgtcgtcaaggagctgggcgacgcggtgccagacgtcggcatgggcgacagggccac 509 | |||||||||||||||| ||||||||| |||| |||||||||||||| || |||| || Sbjct: 881 g-ccgtcgtcaaggagctcggcgacgcgctgcccgacgtcggcatgggggatagggagac 939 Query: 510 cgatttcaacttcatgtccatatgcaaggaagcctaccttgtgacgtcgaggaagtacag 569 ||| ||| ||||||||||||| |||||||| |||||||| |||||||||||||||||||| Sbjct: 940 cgacttcgacttcatgtccatctgcaaggaggcctacctggtgacgtcgaggaagtacag 999
>gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0012G21, complete sequence Length = 135750 Score = 240 bits (121), Expect = 4e-60 Identities = 434/537 (80%), Gaps = 1/537 (0%) Strand = Plus / Plus Query: 2 cggcacgctgctccggtcctccaacgccttcccctactacctcctggtggcgctggaggc 61 |||||||||||||| |||| || ||||||||| ||||||||||| || ||||| ||||| Sbjct: 112610 cggcacgctgctcctgtcccgcagcgccttcccgtactacctcctcgtcgcgctcgaggc 112669 Query: 62 cggcagcgtcctccgcgccgtggcgctgctcctgtcggtgccgttcgtgtacgtgaccta 121 |||| || ||||||||| || ||||||||| |||| ||||| ||||| ||| | || || Sbjct: 112670 cggcggccccctccgcgcggtcgcgctgctcatgtccgtgcccttcgtctacctcacgta 112729 Query: 122 catcttcttctccgagtcgctggccatcagcaccctggtgtacatctccgtggccgggct 181 | || | |||||||||| || ||| | || | ||| |||||||| ||||||| || || Sbjct: 112730 cgtcaccatctccgagtccctcgccgtgcgcgcgctgctgtacatcgccgtggcgggtct 112789 Query: 182 caaggtgaggagcatcgagatggcggcgcggtcggtgctgcccaagttctacgcgcagga 241 | |||||||| | ||||| || |||||||||||||||||||| ||||||||| || Sbjct: 112790 cgaggtgagggacgtcgagtcggtggcgcggtcggtgctgcccaggttctacgccggcga 112849 Query: 242 tgtccacccggagagctggagggtgttcaggtccttcggcaagcggtacatcatcacggc 301 |||||||||||| | ||| |||||||||| || ||||||| | ||| | || | ||||| Sbjct: 112850 cgtccacccggaggggtggcgggtgttcagctcgttcggcaggaggtgcgtcgtgacggc 112909 Query: 302 cagccccaggatcatggtggagcccttcgccagggagttcctcggtgccgacagggtggt 361 ||||||||| | ||||||||||| ||||| |||| ||||||||| || |||||||| | Sbjct: 112910 gagccccagggtgatggtggagccgttcgcgagggcgttcctcggcgcggacagggtcat 112969 Query: 362 gggcacggagctggaggtcggcaagtccggcaaggccacggggttcatggtgaagcccgg 421 ||||||||||||||||||||| || ||||| |||||| || ||| | | |||||||| Sbjct: 112970 cggcacggagctggaggtcggcgaggacggcagggccaccggcttcgtcgccaagcccgg 113029 Query: 422 ggtgctcgtcggcgagcacaagaagcaggcccgtcgtcaaggagctgggcgacgcggtgc 481 |||||| || |||||||||||| | | | | || || | |||| | ||||||||| ||| Sbjct: 113030 cgtgctcatccgcgagcacaagaggaacg-cggtggtgagggagttcggcgacgcgctgc 113088 Query: 482 cagacgtcggcatgggcgacagggccaccgatttcaacttcatgtccatatgcaagg 538 | |||||||||||||| ||||||| | ||| ||| |||||||| |||| ||||||| Sbjct: 113089 cggacgtcggcatgggggacagggagagcgacttcgacttcatggccatctgcaagg 113145
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 240 bits (121), Expect = 4e-60 Identities = 434/537 (80%), Gaps = 1/537 (0%) Strand = Plus / Plus Query: 2 cggcacgctgctccggtcctccaacgccttcccctactacctcctggtggcgctggaggc 61 |||||||||||||| |||| || ||||||||| ||||||||||| || ||||| ||||| Sbjct: 21860201 cggcacgctgctcctgtcccgcagcgccttcccgtactacctcctcgtcgcgctcgaggc 21860260 Query: 62 cggcagcgtcctccgcgccgtggcgctgctcctgtcggtgccgttcgtgtacgtgaccta 121 |||| || ||||||||| || ||||||||| |||| ||||| ||||| ||| | || || Sbjct: 21860261 cggcggccccctccgcgcggtcgcgctgctcatgtccgtgcccttcgtctacctcacgta 21860320 Query: 122 catcttcttctccgagtcgctggccatcagcaccctggtgtacatctccgtggccgggct 181 | || | |||||||||| || ||| | || | ||| |||||||| ||||||| || || Sbjct: 21860321 cgtcaccatctccgagtccctcgccgtgcgcgcgctgctgtacatcgccgtggcgggtct 21860380 Query: 182 caaggtgaggagcatcgagatggcggcgcggtcggtgctgcccaagttctacgcgcagga 241 | |||||||| | ||||| || |||||||||||||||||||| ||||||||| || Sbjct: 21860381 cgaggtgagggacgtcgagtcggtggcgcggtcggtgctgcccaggttctacgccggcga 21860440 Query: 242 tgtccacccggagagctggagggtgttcaggtccttcggcaagcggtacatcatcacggc 301 |||||||||||| | ||| |||||||||| || ||||||| | ||| | || | ||||| Sbjct: 21860441 cgtccacccggaggggtggcgggtgttcagctcgttcggcaggaggtgcgtcgtgacggc 21860500 Query: 302 cagccccaggatcatggtggagcccttcgccagggagttcctcggtgccgacagggtggt 361 ||||||||| | ||||||||||| ||||| |||| ||||||||| || |||||||| | Sbjct: 21860501 gagccccagggtgatggtggagccgttcgcgagggcgttcctcggcgcggacagggtcat 21860560 Query: 362 gggcacggagctggaggtcggcaagtccggcaaggccacggggttcatggtgaagcccgg 421 ||||||||||||||||||||| || ||||| |||||| || ||| | | |||||||| Sbjct: 21860561 cggcacggagctggaggtcggcgaggacggcagggccaccggcttcgtcgccaagcccgg 21860620 Query: 422 ggtgctcgtcggcgagcacaagaagcaggcccgtcgtcaaggagctgggcgacgcggtgc 481 |||||| || |||||||||||| | | | | || || | |||| | ||||||||| ||| Sbjct: 21860621 cgtgctcatccgcgagcacaagaggaacg-cggtggtgagggagttcggcgacgcgctgc 21860679 Query: 482 cagacgtcggcatgggcgacagggccaccgatttcaacttcatgtccatatgcaagg 538 | |||||||||||||| ||||||| | ||| ||| |||||||| |||| ||||||| Sbjct: 21860680 cggacgtcggcatgggggacagggagagcgacttcgacttcatggccatctgcaagg 21860736
>ref|XM_463861.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1521 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 30 ttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctg 89 ||||| |||||| |||| ||||| || |||||||||||| ||||||||| |||||||| Sbjct: 130 ttcccgtactacttccttgtggctctcgaggccggcagctacctccgcgcgctggcgctg 189 Query: 90 ct 91 || Sbjct: 190 ct 191 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 518 acttcatgtccatatgcaaggaagcctac 546 |||||||| |||| ||||||||||||||| Sbjct: 617 acttcatggccatctgcaaggaagcctac 645
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 30 ttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctg 89 ||||| |||||| |||| ||||| || |||||||||||| ||||||||| |||||||| Sbjct: 778139 ttcccgtactacttccttgtggctctcgaggccggcagctacctccgcgcgctggcgctg 778080 Query: 90 ct 91 || Sbjct: 778079 ct 778078
>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036E06 Length = 137926 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 30 ttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctg 89 ||||| |||||| |||| ||||| || |||||||||||| ||||||||| |||||||| Sbjct: 56270 ttcccgtactacttccttgtggctctcgaggccggcagctacctccgcgcgctggcgctg 56211 Query: 90 ct 91 || Sbjct: 56210 ct 56209
>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1399_H05 Length = 147670 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 30 ttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctg 89 ||||| |||||| |||| ||||| || |||||||||||| ||||||||| |||||||| Sbjct: 135034 ttcccgtactacttccttgtggctctcgaggccggcagctacctccgcgcgctggcgctg 134975 Query: 90 ct 91 || Sbjct: 134974 ct 134973
>ref|NM_197382.1| Oryza sativa (japonica cultivar-group) putative transporter (OSJNBb0018B10.4), mRNA Length = 1697 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 371 gctggaggtcggcaagtccggcaagg 396 ||||||| |||||||||||||||||| Sbjct: 54 gctggagctcggcaagtccggcaagg 79
>gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 genomic sequence, complete sequence Length = 135789 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 371 gctggaggtcggcaagtccggcaagg 396 ||||||| |||||||||||||||||| Sbjct: 29886 gctggagctcggcaagtccggcaagg 29911
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 371 gctggaggtcggcaagtccggcaagg 396 ||||||| |||||||||||||||||| Sbjct: 19572695 gctggagctcggcaagtccggcaagg 19572720 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 cggtgccgttcgtgtacgtg 116 |||||||||||||||||||| Sbjct: 17911289 cggtgccgttcgtgtacgtg 17911308
>dbj|AK103488.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130M19, full insert sequence Length = 1779 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 371 gctggaggtcggcaagtccggcaagg 396 ||||||| |||||||||||||||||| Sbjct: 136 gctggagctcggcaagtccggcaagg 161
>gb|DQ180314.1| Fragaria x ananassa clone PBCESTFXA9 SSR marker Length = 883 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 276 ttcggcaagcggtacatcatcacggc 301 ||||||||||| |||||||||||||| Sbjct: 471 ttcggcaagcgctacatcatcacggc 496
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 371 gctggaggtcggcaagtccggcaagg 396 ||||||| |||||||||||||||||| Sbjct: 19583971 gctggagctcggcaagtccggcaagg 19583996 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 cggtgccgttcgtgtacgtg 116 |||||||||||||||||||| Sbjct: 17920542 cggtgccgttcgtgtacgtg 17920561
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 44 cctggtggcgctggaggccggcagc 68 ||||||||||||||||| ||||||| Sbjct: 245083 cctggtggcgctggagggcggcagc 245059
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 ctggccatcagcaccctggtg 161 ||||||||||||||||||||| Sbjct: 4451238 ctggccatcagcaccctggtg 4451218
>emb|BX817236.1|CNS0ABN7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH94ZF05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1340 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 ctcctggtggcgctggaggcc 62 ||||||||||||||||||||| Sbjct: 772 ctcctggtggcgctggaggcc 792
>emb|AJ223970.1|MDAJ39670 Streptomyces ambofaciens srmA, mgtA genes Length = 2070 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 417 cccggggtgctcgtcggcgag 437 ||||||||||||||||||||| Sbjct: 732 cccggggtgctcgtcggcgag 752
>ref|NM_129367.3| Arabidopsis thaliana ATGPAT6/GPAT6; 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase AT2G38110 (ATGPAT6/GPAT6) mRNA, complete cds Length = 1845 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 518 acttcatgtccatatgcaaggaag 541 ||||||||||||| |||||||||| Sbjct: 747 acttcatgtccatctgcaaggaag 770
>ref|NM_197089.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0029C15.14), mRNA Length = 642 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cggtgccgttcgtgtacgtg 116 |||||||||||||||||||| Sbjct: 301 cggtgccgttcgtgtacgtg 282
>gb|BC107183.1| Mus musculus vomeronasal 1 receptor, B1, mRNA (cDNA clone MGC:130072 IMAGE:40050746), complete cds Length = 941 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 gcacaagaagcaggcccgtc 456 |||||||||||||||||||| Sbjct: 639 gcacaagaagcaggcccgtc 658
>gb|AY743675.1| Bos taurus alpha-1 type II collagen (COL2A1) gene, complete sequence Length = 30941 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 gctggccatcagcaccctgg 159 |||||||||||||||||||| Sbjct: 23233 gctggccatcagcaccctgg 23214
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 gagcatcgagatggcggcgc 210 |||||||||||||||||||| Sbjct: 451615 gagcatcgagatggcggcgc 451634
>gb|AC165969.5| Mus musculus BAC clone RP23-141K11 from chromosome 6, complete sequence Length = 190936 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 gcacaagaagcaggcccgtc 456 |||||||||||||||||||| Sbjct: 170649 gcacaagaagcaggcccgtc 170630
>gb|AC123549.5| Mus musculus BAC clone RP24-91K17 from chromosome 6, complete sequence Length = 182759 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 gcacaagaagcaggcccgtc 456 |||||||||||||||||||| Sbjct: 16916 gcacaagaagcaggcccgtc 16897
>gb|AC117196.3| Mus musculus BAC clone RP23-108H19 from 8, complete sequence Length = 185947 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 ggagttcctcggtgccgaca 354 |||||||||||||||||||| Sbjct: 102742 ggagttcctcggtgccgaca 102761
>gb|BC115706.1| Mus musculus vomeronasal 1 receptor, B1, mRNA (cDNA clone IMAGE:40050947), partial cds Length = 931 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 gcacaagaagcaggcccgtc 456 |||||||||||||||||||| Sbjct: 638 gcacaagaagcaggcccgtc 657
>ref|NM_053225.1| Mus musculus vomeronasal 1 receptor, B1 (V1rb1), mRNA Length = 933 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 gcacaagaagcaggcccgtc 456 |||||||||||||||||||| Sbjct: 639 gcacaagaagcaggcccgtc 658
>gb|AY114657.1| Arabidopsis thaliana unknown protein (At2g38110) mRNA, complete cds Length = 1661 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 518 acttcatgtccatatgcaaggaag 541 ||||||||||||| |||||||||| Sbjct: 617 acttcatgtccatctgcaaggaag 640
>gb|AF129005.1|AF129005 Mus musculus VNO olfactory cluster Length = 198515 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 gcacaagaagcaggcccgtc 456 |||||||||||||||||||| Sbjct: 17848 gcacaagaagcaggcccgtc 17867
>gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 genomic sequence, complete sequence Length = 148816 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cggtgccgttcgtgtacgtg 116 |||||||||||||||||||| Sbjct: 20752 cggtgccgttcgtgtacgtg 20733
>gb|AY062721.1| Arabidopsis thaliana Unknown protein (At2g38110; F16M14.4) mRNA, complete cds Length = 1793 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 518 acttcatgtccatatgcaaggaag 541 ||||||||||||| |||||||||| Sbjct: 747 acttcatgtccatctgcaaggaag 770
>emb|BX821016.1|CNS0A85B Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH91ZC11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1756 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 518 acttcatgtccatatgcaaggaag 541 ||||||||||||| |||||||||| Sbjct: 733 acttcatgtccatctgcaaggaag 756
>gb|AF291489.1|AF291489 Mus musculus vomeronasal receptor V1RB1 (V1rb1) gene, complete cds Length = 933 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 gcacaagaagcaggcccgtc 456 |||||||||||||||||||| Sbjct: 639 gcacaagaagcaggcccgtc 658
>dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, complete sequence Length = 256992 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ctccgtggccgggctcaagg 186 |||||||||||||||||||| Sbjct: 8520 ctccgtggccgggctcaagg 8501
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 330 gccagggagttcctcggtgccgac 353 ||||| |||||||||||||||||| Sbjct: 1975836 gccagcgagttcctcggtgccgac 1975813
>emb|AL954321.8| Mouse DNA sequence from clone RP23-407M22 on chromosome 4, complete sequence Length = 65324 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 tttcaacttcatgtccatat 532 |||||||||||||||||||| Sbjct: 60757 tttcaacttcatgtccatat 60776
>gb|U22894.1|SLU22894 Streptomyces lividans amplifiable element AUD1 Length = 20996 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 gtggcgctgctcctgtcggtgccg 104 ||||||||||||||| |||||||| Sbjct: 883 gtggcgctgctcctgccggtgccg 906
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ctccgtggccgggctcaagg 186 |||||||||||||||||||| Sbjct: 222908 ctccgtggccgggctcaagg 222889
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 ggcgctggaggccggcagcg 69 |||||||||||||||||||| Sbjct: 2542534 ggcgctggaggccggcagcg 2542515
>dbj|AB062902.1| Mus musculus V1RA5 gene for vomeronasal receptor 1 A5, complete cds Length = 933 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 gcacaagaagcaggcccgtc 456 |||||||||||||||||||| Sbjct: 639 gcacaagaagcaggcccgtc 658 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,720,608 Number of Sequences: 3902068 Number of extensions: 3720608 Number of successful extensions: 72594 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71643 Number of HSP's gapped (non-prelim): 942 length of query: 569 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 546 effective length of database: 17,143,297,704 effective search space: 9360240546384 effective search space used: 9360240546384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)