ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags10d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK105944.1| Oryza sativa (japonica cultivar-group) cDNA clon... 690 0.0
2dbj|AK070880.1| Oryza sativa (japonica cultivar-group) cDNA clon... 690 0.0
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 660 0.0
4dbj|AP003442.2| Oryza sativa (japonica cultivar-group) genomic D... 660 0.0
5gb|AY105347.1| Zea mays PCO089398 mRNA sequence 547 e-152
6gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome... 240 4e-60
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 240 4e-60
8ref|XM_463861.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
10dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
11dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
12ref|NM_197382.1| Oryza sativa (japonica cultivar-group) putative... 44 0.49
13gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 geno... 44 0.49
14dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
15dbj|AK103488.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.49
16gb|DQ180314.1| Fragaria x ananassa clone PBCESTFXA9 SSR marker 44 0.49
17gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.49
18gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 2.0
19gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 42 2.0
20emb|BX817236.1|CNS0ABN7 Arabidopsis thaliana Full-length cDNA Co... 42 2.0
21emb|AJ223970.1|MDAJ39670 Streptomyces ambofaciens srmA, mgtA genes 42 2.0
22ref|NM_129367.3| Arabidopsis thaliana ATGPAT6/GPAT6; 1-acylglyce... 40 7.7
23ref|NM_197089.1| Oryza sativa (japonica cultivar-group) hypothet... 40 7.7
24gb|BC107183.1| Mus musculus vomeronasal 1 receptor, B1, mRNA (cD... 40 7.7
25gb|AY743675.1| Bos taurus alpha-1 type II collagen (COL2A1) gene... 40 7.7
26gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 7.7
27gb|AC165969.5| Mus musculus BAC clone RP23-141K11 from chromosom... 40 7.7
28gb|AC123549.5| Mus musculus BAC clone RP24-91K17 from chromosome... 40 7.7
29gb|AC117196.3| Mus musculus BAC clone RP23-108H19 from 8, comple... 40 7.7
30gb|BC115706.1| Mus musculus vomeronasal 1 receptor, B1, mRNA (cD... 40 7.7
31ref|NM_053225.1| Mus musculus vomeronasal 1 receptor, B1 (V1rb1)... 40 7.7
32gb|AY114657.1| Arabidopsis thaliana unknown protein (At2g38110) ... 40 7.7
33gb|AF129005.1|AF129005 Mus musculus VNO olfactory cluster 40 7.7
34gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 gen... 40 7.7
35gb|AY062721.1| Arabidopsis thaliana Unknown protein (At2g38110; ... 40 7.7
36emb|BX821016.1|CNS0A85B Arabidopsis thaliana Full-length cDNA Co... 40 7.7
37gb|AF291489.1|AF291489 Mus musculus vomeronasal receptor V1RB1 (... 40 7.7
38dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, comp... 40 7.7
39emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 7.7
40emb|AL954321.8| Mouse DNA sequence from clone RP23-407M22 on chr... 40 7.7
41gb|U22894.1|SLU22894 Streptomyces lividans amplifiable element AUD1 40 7.7
42gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 7.7
43dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 7.7
44dbj|AB062902.1| Mus musculus V1RA5 gene for vomeronasal receptor... 40 7.7

>dbj|AK105944.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C03, full
           insert sequence
          Length = 1715

 Score =  690 bits (348), Expect = 0.0
 Identities = 496/544 (91%), Gaps = 1/544 (0%)
 Strand = Plus / Plus

                                                                       
Query: 26  cgccttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggc 85
           ||||||||| ||||||||||| || ||||| |||||||||||||| ||||||||||| | 
Sbjct: 193 cgccttcccgtactacctcctcgtcgcgctcgaggccggcagcgtgctccgcgccgtcgt 252

                                                                       
Query: 86  gctgctcctgtcggtgccgttcgtgtacgtgacctacatcttcttctccgagtcgctggc 145
           |||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 253 gctgctgctgtccgtgccgttcgtctacgtgacctacattttcttctccgagtcgctggc 312

                                                                       
Query: 146 catcagcaccctggtgtacatctccgtggccgggctcaaggtgaggagcatcgagatggc 205
           ||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| 
Sbjct: 313 catcagcacgctggtgtacatctccgtggcggggctcaaggtgaggaacatcgagatggt 372

                                                                       
Query: 206 ggcgcggtcggtgctgcccaagttctacgcgcaggatgtccacccggagagctggagggt 265
           ||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct: 373 ggcgcggtcggtgctgcccaagttctacgcggaggacgtgcacccggagagctggagggt 432

                                                                       
Query: 266 gttcaggtccttcggcaagcggtacatcatcacggccagccccaggatcatggtggagcc 325
           |||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 433 gttcaactccttcggcaagcggtacatcatcacggcgagccccaggatcatggtggagca 492

                                                                       
Query: 326 cttcgccagggagttcctcggtgccgacagggtggtgggcacggagctggaggtcggcaa 385
           |||||||| |  ||||||||| ||||||| |||||| || ||||||||||||||||||||
Sbjct: 493 cttcgccaagacgttcctcggcgccgacaaggtggtcgggacggagctggaggtcggcaa 552

                                                                       
Query: 386 gtccggcaaggccacggggttcatggtgaagcccggggtgctcgtcggcgagcacaagaa 445
           |  ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| 
Sbjct: 553 gaacggcaaggccacggggttcatggtgaagcccggagtgctcgtgggcgaccacaagag 612

                                                                       
Query: 446 gcaggcccgtcgtcaaggagctgggcgacgcggtgccagacgtcggcatgggcgacaggg 505
           ||||| ||||||||||||||||  ||||||||||||| ||||||||| ||||||||||||
Sbjct: 613 gcagg-ccgtcgtcaaggagctacgcgacgcggtgcccgacgtcggcttgggcgacaggg 671

                                                                       
Query: 506 ccaccgatttcaacttcatgtccatatgcaaggaagcctaccttgtgacgtcgaggaagt 565
             || |||||| |||||||||||||||||||||| |||||||| ||||| || |||||||
Sbjct: 672 agacggatttcgacttcatgtccatatgcaaggaggcctacctcgtgacatcaaggaagt 731

               
Query: 566 acag 569
           ||||
Sbjct: 732 acag 735



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>dbj|AK070880.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064I03, full
            insert sequence
          Length = 3618

 Score =  690 bits (348), Expect = 0.0
 Identities = 496/544 (91%), Gaps = 1/544 (0%)
 Strand = Plus / Plus

                                                                        
Query: 26   cgccttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggc 85
            ||||||||| ||||||||||| || ||||| |||||||||||||| ||||||||||| | 
Sbjct: 2059 cgccttcccgtactacctcctcgtcgcgctcgaggccggcagcgtgctccgcgccgtcgt 2118

                                                                        
Query: 86   gctgctcctgtcggtgccgttcgtgtacgtgacctacatcttcttctccgagtcgctggc 145
            |||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 2119 gctgctgctgtccgtgccgttcgtctacgtgacctacattttcttctccgagtcgctggc 2178

                                                                        
Query: 146  catcagcaccctggtgtacatctccgtggccgggctcaaggtgaggagcatcgagatggc 205
            ||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| 
Sbjct: 2179 catcagcacgctggtgtacatctccgtggcggggctcaaggtgaggaacatcgagatggt 2238

                                                                        
Query: 206  ggcgcggtcggtgctgcccaagttctacgcgcaggatgtccacccggagagctggagggt 265
            ||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct: 2239 ggcgcggtcggtgctgcccaagttctacgcggaggacgtgcacccggagagctggagggt 2298

                                                                        
Query: 266  gttcaggtccttcggcaagcggtacatcatcacggccagccccaggatcatggtggagcc 325
            |||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 2299 gttcaactccttcggcaagcggtacatcatcacggcgagccccaggatcatggtggagca 2358

                                                                        
Query: 326  cttcgccagggagttcctcggtgccgacagggtggtgggcacggagctggaggtcggcaa 385
            |||||||| |  ||||||||| ||||||| |||||| || ||||||||||||||||||||
Sbjct: 2359 cttcgccaagacgttcctcggcgccgacaaggtggtcgggacggagctggaggtcggcaa 2418

                                                                        
Query: 386  gtccggcaaggccacggggttcatggtgaagcccggggtgctcgtcggcgagcacaagaa 445
            |  ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| 
Sbjct: 2419 gaacggcaaggccacggggttcatggtgaagcccggagtgctcgtgggcgaccacaagag 2478

                                                                        
Query: 446  gcaggcccgtcgtcaaggagctgggcgacgcggtgccagacgtcggcatgggcgacaggg 505
            ||||| ||||||||||||||||  ||||||||||||| ||||||||| ||||||||||||
Sbjct: 2479 gcagg-ccgtcgtcaaggagctacgcgacgcggtgcccgacgtcggcttgggcgacaggg 2537

                                                                        
Query: 506  ccaccgatttcaacttcatgtccatatgcaaggaagcctaccttgtgacgtcgaggaagt 565
              || |||||| |||||||||||||||||||||| |||||||| ||||| || |||||||
Sbjct: 2538 agacggatttcgacttcatgtccatatgcaaggaggcctacctcgtgacatcaaggaagt 2597

                
Query: 566  acag 569
            ||||
Sbjct: 2598 acag 2601



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  660 bits (333), Expect = 0.0
 Identities = 469/513 (91%), Gaps = 1/513 (0%)
 Strand = Plus / Minus

                                                                            
Query: 26       cgccttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggc 85
                ||||||||| ||||||||||| || ||||| |||||||||||||| ||||||||||| | 
Sbjct: 36859442 cgccttcccgtactacctcctcgtcgcgctcgaggccggcagcgtgctccgcgccgtcgt 36859383

                                                                            
Query: 86       gctgctcctgtcggtgccgttcgtgtacgtgacctacatcttcttctccgagtcgctggc 145
                |||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 36859382 gctgctgctgtccgtgccgttcgtctacgtgacctacattttcttctccgagtcgctggc 36859323

                                                                            
Query: 146      catcagcaccctggtgtacatctccgtggccgggctcaaggtgaggagcatcgagatggc 205
                ||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| 
Sbjct: 36859322 catcagcacgctggtgtacatctccgtggcggggctcaaggtgaggaacatcgagatggt 36859263

                                                                            
Query: 206      ggcgcggtcggtgctgcccaagttctacgcgcaggatgtccacccggagagctggagggt 265
                ||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct: 36859262 ggcgcggtcggtgctgcccaagttctacgcggaggacgtgcacccggagagctggagggt 36859203

                                                                            
Query: 266      gttcaggtccttcggcaagcggtacatcatcacggccagccccaggatcatggtggagcc 325
                |||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 36859202 gttcaactccttcggcaagcggtacatcatcacggcgagccccaggatcatggtggagca 36859143

                                                                            
Query: 326      cttcgccagggagttcctcggtgccgacagggtggtgggcacggagctggaggtcggcaa 385
                |||||||| |  ||||||||| ||||||| |||||| || ||||||||||||||||||||
Sbjct: 36859142 cttcgccaagacgttcctcggcgccgacaaggtggtcgggacggagctggaggtcggcaa 36859083

                                                                            
Query: 386      gtccggcaaggccacggggttcatggtgaagcccggggtgctcgtcggcgagcacaagaa 445
                |  ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| 
Sbjct: 36859082 gaacggcaaggccacggggttcatggtgaagcccggagtgctcgtgggcgaccacaagag 36859023

                                                                            
Query: 446      gcaggcccgtcgtcaaggagctgggcgacgcggtgccagacgtcggcatgggcgacaggg 505
                ||||| ||||||||||||||||  ||||||||||||| ||||||||| ||||||||||||
Sbjct: 36859022 gcagg-ccgtcgtcaaggagctacgcgacgcggtgcccgacgtcggcttgggcgacaggg 36858964

                                                 
Query: 506      ccaccgatttcaacttcatgtccatatgcaagg 538
                  || |||||| |||||||||||||||||||||
Sbjct: 36858963 agacggatttcgacttcatgtccatatgcaagg 36858931



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>dbj|AP003442.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1096A10
          Length = 150976

 Score =  660 bits (333), Expect = 0.0
 Identities = 469/513 (91%), Gaps = 1/513 (0%)
 Strand = Plus / Minus

                                                                         
Query: 26    cgccttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggc 85
             ||||||||| ||||||||||| || ||||| |||||||||||||| ||||||||||| | 
Sbjct: 75020 cgccttcccgtactacctcctcgtcgcgctcgaggccggcagcgtgctccgcgccgtcgt 74961

                                                                         
Query: 86    gctgctcctgtcggtgccgttcgtgtacgtgacctacatcttcttctccgagtcgctggc 145
             |||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 74960 gctgctgctgtccgtgccgttcgtctacgtgacctacattttcttctccgagtcgctggc 74901

                                                                         
Query: 146   catcagcaccctggtgtacatctccgtggccgggctcaaggtgaggagcatcgagatggc 205
             ||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| 
Sbjct: 74900 catcagcacgctggtgtacatctccgtggcggggctcaaggtgaggaacatcgagatggt 74841

                                                                         
Query: 206   ggcgcggtcggtgctgcccaagttctacgcgcaggatgtccacccggagagctggagggt 265
             ||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct: 74840 ggcgcggtcggtgctgcccaagttctacgcggaggacgtgcacccggagagctggagggt 74781

                                                                         
Query: 266   gttcaggtccttcggcaagcggtacatcatcacggccagccccaggatcatggtggagcc 325
             |||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 74780 gttcaactccttcggcaagcggtacatcatcacggcgagccccaggatcatggtggagca 74721

                                                                         
Query: 326   cttcgccagggagttcctcggtgccgacagggtggtgggcacggagctggaggtcggcaa 385
             |||||||| |  ||||||||| ||||||| |||||| || ||||||||||||||||||||
Sbjct: 74720 cttcgccaagacgttcctcggcgccgacaaggtggtcgggacggagctggaggtcggcaa 74661

                                                                         
Query: 386   gtccggcaaggccacggggttcatggtgaagcccggggtgctcgtcggcgagcacaagaa 445
             |  ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| 
Sbjct: 74660 gaacggcaaggccacggggttcatggtgaagcccggagtgctcgtgggcgaccacaagag 74601

                                                                         
Query: 446   gcaggcccgtcgtcaaggagctgggcgacgcggtgccagacgtcggcatgggcgacaggg 505
             ||||| ||||||||||||||||  ||||||||||||| ||||||||| ||||||||||||
Sbjct: 74600 gcagg-ccgtcgtcaaggagctacgcgacgcggtgcccgacgtcggcttgggcgacaggg 74542

                                              
Query: 506   ccaccgatttcaacttcatgtccatatgcaagg 538
               || |||||| |||||||||||||||||||||
Sbjct: 74541 agacggatttcgacttcatgtccatatgcaagg 74509



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>gb|AY105347.1| Zea mays PCO089398 mRNA sequence
          Length = 2225

 Score =  547 bits (276), Expect = e-152
 Identities = 475/540 (87%), Gaps = 1/540 (0%)
 Strand = Plus / Plus

                                                                       
Query: 30  ttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctg 89
           ||||||||||||||||| ||||| || ||||||||||||||||||||||||| |  ||||
Sbjct: 461 ttcccctactacctcctcgtggctctcgaggccggcagcgtcctccgcgccgcgctgctg 520

                                                                       
Query: 90  ctcctgtcggtgccgttcgtgtacgtgacctacatcttcttctccgagtcgctggccatc 149
           |||||||| ||||||||||| ||||| ||||||  |||||||||||||||||||||||||
Sbjct: 521 ctcctgtccgtgccgttcgtctacgtcacctacgccttcttctccgagtcgctggccatc 580

                                                                       
Query: 150 agcaccctggtgtacatctccgtggccgggctcaaggtgaggagcatcgagatggcggcg 209
           ||||| |||||||||||||||||||| |||||||||||| | ||||||||||||| ||||
Sbjct: 581 agcacgctggtgtacatctccgtggcggggctcaaggtgcgcagcatcgagatggtggcg 640

                                                                       
Query: 210 cggtcggtgctgcccaagttctacgcgcaggatgtccacccggagagctggagggtgttc 269
           || || ||||| |||| ||||||||||   || || ||||||||||||||||||||||||
Sbjct: 641 cgctccgtgctccccaggttctacgcgggcgacgtgcacccggagagctggagggtgttc 700

                                                                       
Query: 270 aggtccttcggcaagcggtacatcatcacggccagccccaggatcatggtggagcccttc 329
           || |||||||||| ||| ||| || ||||||||||||||||| ||||||| |||||||||
Sbjct: 701 agctccttcggcaggcgctacgtcgtcacggccagccccagggtcatggtcgagcccttc 760

                                                                       
Query: 330 gccagggagttcctcggtgccgacagggtggtgggcacggagctggaggtcggcaagtcc 389
           |||||||  ||||| || ||||||| ||| || || || |||||||||||||||| |  |
Sbjct: 761 gccagggccttcctaggcgccgacaaggtcgtcgggaccgagctggaggtcggcagggac 820

                                                                       
Query: 390 ggcaaggccacggggttcatggtgaagcccggggtgctcgtcggcgagcacaagaagcag 449
           |||||||||||||| |||||||  | ||| || |||||||||||||| ||||||||| ||
Sbjct: 821 ggcaaggccacgggcttcatggccaggccaggcgtgctcgtcggcgaccacaagaagaag 880

                                                                       
Query: 450 gcccgtcgtcaaggagctgggcgacgcggtgccagacgtcggcatgggcgacagggccac 509
           | |||||||||||||||| ||||||||| |||| |||||||||||||| || ||||  ||
Sbjct: 881 g-ccgtcgtcaaggagctcggcgacgcgctgcccgacgtcggcatgggggatagggagac 939

                                                                       
Query: 510 cgatttcaacttcatgtccatatgcaaggaagcctaccttgtgacgtcgaggaagtacag 569
           ||| ||| ||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 940 cgacttcgacttcatgtccatctgcaaggaggcctacctggtgacgtcgaggaagtacag 999



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>gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0012G21,
              complete sequence
          Length = 135750

 Score =  240 bits (121), Expect = 4e-60
 Identities = 434/537 (80%), Gaps = 1/537 (0%)
 Strand = Plus / Plus

                                                                          
Query: 2      cggcacgctgctccggtcctccaacgccttcccctactacctcctggtggcgctggaggc 61
              |||||||||||||| ||||  || ||||||||| ||||||||||| || ||||| |||||
Sbjct: 112610 cggcacgctgctcctgtcccgcagcgccttcccgtactacctcctcgtcgcgctcgaggc 112669

                                                                          
Query: 62     cggcagcgtcctccgcgccgtggcgctgctcctgtcggtgccgttcgtgtacgtgaccta 121
              |||| ||  ||||||||| || ||||||||| |||| ||||| ||||| ||| | || ||
Sbjct: 112670 cggcggccccctccgcgcggtcgcgctgctcatgtccgtgcccttcgtctacctcacgta 112729

                                                                          
Query: 122    catcttcttctccgagtcgctggccatcagcaccctggtgtacatctccgtggccgggct 181
              | ||  | |||||||||| || ||| |  || | ||| |||||||| ||||||| || ||
Sbjct: 112730 cgtcaccatctccgagtccctcgccgtgcgcgcgctgctgtacatcgccgtggcgggtct 112789

                                                                          
Query: 182    caaggtgaggagcatcgagatggcggcgcggtcggtgctgcccaagttctacgcgcagga 241
              | ||||||||  | |||||  || |||||||||||||||||||| |||||||||    ||
Sbjct: 112790 cgaggtgagggacgtcgagtcggtggcgcggtcggtgctgcccaggttctacgccggcga 112849

                                                                          
Query: 242    tgtccacccggagagctggagggtgttcaggtccttcggcaagcggtacatcatcacggc 301
               |||||||||||| | ||| |||||||||| || ||||||| | ||| | || | |||||
Sbjct: 112850 cgtccacccggaggggtggcgggtgttcagctcgttcggcaggaggtgcgtcgtgacggc 112909

                                                                          
Query: 302    cagccccaggatcatggtggagcccttcgccagggagttcctcggtgccgacagggtggt 361
               ||||||||| | ||||||||||| ||||| |||| ||||||||| || ||||||||  |
Sbjct: 112910 gagccccagggtgatggtggagccgttcgcgagggcgttcctcggcgcggacagggtcat 112969

                                                                          
Query: 362    gggcacggagctggaggtcggcaagtccggcaaggccacggggttcatggtgaagcccgg 421
               ||||||||||||||||||||| ||  ||||| |||||| || ||| | |  ||||||||
Sbjct: 112970 cggcacggagctggaggtcggcgaggacggcagggccaccggcttcgtcgccaagcccgg 113029

                                                                          
Query: 422    ggtgctcgtcggcgagcacaagaagcaggcccgtcgtcaaggagctgggcgacgcggtgc 481
               |||||| || |||||||||||| | | | | || || | |||| | ||||||||| |||
Sbjct: 113030 cgtgctcatccgcgagcacaagaggaacg-cggtggtgagggagttcggcgacgcgctgc 113088

                                                                       
Query: 482    cagacgtcggcatgggcgacagggccaccgatttcaacttcatgtccatatgcaagg 538
              | |||||||||||||| |||||||  | ||| ||| |||||||| |||| |||||||
Sbjct: 113089 cggacgtcggcatgggggacagggagagcgacttcgacttcatggccatctgcaagg 113145



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  240 bits (121), Expect = 4e-60
 Identities = 434/537 (80%), Gaps = 1/537 (0%)
 Strand = Plus / Plus

                                                                            
Query: 2        cggcacgctgctccggtcctccaacgccttcccctactacctcctggtggcgctggaggc 61
                |||||||||||||| ||||  || ||||||||| ||||||||||| || ||||| |||||
Sbjct: 21860201 cggcacgctgctcctgtcccgcagcgccttcccgtactacctcctcgtcgcgctcgaggc 21860260

                                                                            
Query: 62       cggcagcgtcctccgcgccgtggcgctgctcctgtcggtgccgttcgtgtacgtgaccta 121
                |||| ||  ||||||||| || ||||||||| |||| ||||| ||||| ||| | || ||
Sbjct: 21860261 cggcggccccctccgcgcggtcgcgctgctcatgtccgtgcccttcgtctacctcacgta 21860320

                                                                            
Query: 122      catcttcttctccgagtcgctggccatcagcaccctggtgtacatctccgtggccgggct 181
                | ||  | |||||||||| || ||| |  || | ||| |||||||| ||||||| || ||
Sbjct: 21860321 cgtcaccatctccgagtccctcgccgtgcgcgcgctgctgtacatcgccgtggcgggtct 21860380

                                                                            
Query: 182      caaggtgaggagcatcgagatggcggcgcggtcggtgctgcccaagttctacgcgcagga 241
                | ||||||||  | |||||  || |||||||||||||||||||| |||||||||    ||
Sbjct: 21860381 cgaggtgagggacgtcgagtcggtggcgcggtcggtgctgcccaggttctacgccggcga 21860440

                                                                            
Query: 242      tgtccacccggagagctggagggtgttcaggtccttcggcaagcggtacatcatcacggc 301
                 |||||||||||| | ||| |||||||||| || ||||||| | ||| | || | |||||
Sbjct: 21860441 cgtccacccggaggggtggcgggtgttcagctcgttcggcaggaggtgcgtcgtgacggc 21860500

                                                                            
Query: 302      cagccccaggatcatggtggagcccttcgccagggagttcctcggtgccgacagggtggt 361
                 ||||||||| | ||||||||||| ||||| |||| ||||||||| || ||||||||  |
Sbjct: 21860501 gagccccagggtgatggtggagccgttcgcgagggcgttcctcggcgcggacagggtcat 21860560

                                                                            
Query: 362      gggcacggagctggaggtcggcaagtccggcaaggccacggggttcatggtgaagcccgg 421
                 ||||||||||||||||||||| ||  ||||| |||||| || ||| | |  ||||||||
Sbjct: 21860561 cggcacggagctggaggtcggcgaggacggcagggccaccggcttcgtcgccaagcccgg 21860620

                                                                            
Query: 422      ggtgctcgtcggcgagcacaagaagcaggcccgtcgtcaaggagctgggcgacgcggtgc 481
                 |||||| || |||||||||||| | | | | || || | |||| | ||||||||| |||
Sbjct: 21860621 cgtgctcatccgcgagcacaagaggaacg-cggtggtgagggagttcggcgacgcgctgc 21860679

                                                                         
Query: 482      cagacgtcggcatgggcgacagggccaccgatttcaacttcatgtccatatgcaagg 538
                | |||||||||||||| |||||||  | ||| ||| |||||||| |||| |||||||
Sbjct: 21860680 cggacgtcggcatgggggacagggagagcgacttcgacttcatggccatctgcaagg 21860736



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>ref|XM_463861.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1521

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 30  ttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctg 89
           ||||| |||||| |||| ||||| || ||||||||||||  |||||||||  ||||||||
Sbjct: 130 ttcccgtactacttccttgtggctctcgaggccggcagctacctccgcgcgctggcgctg 189

             
Query: 90  ct 91
           ||
Sbjct: 190 ct 191



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 518 acttcatgtccatatgcaaggaagcctac 546
           |||||||| |||| |||||||||||||||
Sbjct: 617 acttcatggccatctgcaaggaagcctac 645



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                          
Query: 30     ttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctg 89
              ||||| |||||| |||| ||||| || ||||||||||||  |||||||||  ||||||||
Sbjct: 778139 ttcccgtactacttccttgtggctctcgaggccggcagctacctccgcgcgctggcgctg 778080

                
Query: 90     ct 91
              ||
Sbjct: 778079 ct 778078



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>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0036E06
          Length = 137926

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                         
Query: 30    ttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctg 89
             ||||| |||||| |||| ||||| || ||||||||||||  |||||||||  ||||||||
Sbjct: 56270 ttcccgtactacttccttgtggctctcgaggccggcagctacctccgcgcgctggcgctg 56211

               
Query: 90    ct 91
             ||
Sbjct: 56210 ct 56209



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>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1399_H05
          Length = 147670

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                          
Query: 30     ttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctg 89
              ||||| |||||| |||| ||||| || ||||||||||||  |||||||||  ||||||||
Sbjct: 135034 ttcccgtactacttccttgtggctctcgaggccggcagctacctccgcgcgctggcgctg 134975

                
Query: 90     ct 91
              ||
Sbjct: 134974 ct 134973



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>ref|NM_197382.1| Oryza sativa (japonica cultivar-group) putative transporter
           (OSJNBb0018B10.4), mRNA
          Length = 1697

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 371 gctggaggtcggcaagtccggcaagg 396
           ||||||| ||||||||||||||||||
Sbjct: 54  gctggagctcggcaagtccggcaagg 79



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>gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 genomic sequence, complete
             sequence
          Length = 135789

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 371   gctggaggtcggcaagtccggcaagg 396
             ||||||| ||||||||||||||||||
Sbjct: 29886 gctggagctcggcaagtccggcaagg 29911



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 371      gctggaggtcggcaagtccggcaagg 396
                ||||||| ||||||||||||||||||
Sbjct: 19572695 gctggagctcggcaagtccggcaagg 19572720



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 97       cggtgccgttcgtgtacgtg 116
                ||||||||||||||||||||
Sbjct: 17911289 cggtgccgttcgtgtacgtg 17911308



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>dbj|AK103488.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130M19, full
           insert sequence
          Length = 1779

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 371 gctggaggtcggcaagtccggcaagg 396
           ||||||| ||||||||||||||||||
Sbjct: 136 gctggagctcggcaagtccggcaagg 161



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>gb|DQ180314.1| Fragaria x ananassa clone PBCESTFXA9 SSR marker
          Length = 883

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 276 ttcggcaagcggtacatcatcacggc 301
           ||||||||||| ||||||||||||||
Sbjct: 471 ttcggcaagcgctacatcatcacggc 496



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 371      gctggaggtcggcaagtccggcaagg 396
                ||||||| ||||||||||||||||||
Sbjct: 19583971 gctggagctcggcaagtccggcaagg 19583996



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 97       cggtgccgttcgtgtacgtg 116
                ||||||||||||||||||||
Sbjct: 17920542 cggtgccgttcgtgtacgtg 17920561



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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 44     cctggtggcgctggaggccggcagc 68
              ||||||||||||||||| |||||||
Sbjct: 245083 cctggtggcgctggagggcggcagc 245059



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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 141     ctggccatcagcaccctggtg 161
               |||||||||||||||||||||
Sbjct: 4451238 ctggccatcagcaccctggtg 4451218



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>emb|BX817236.1|CNS0ABN7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH94ZF05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1340

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 42  ctcctggtggcgctggaggcc 62
           |||||||||||||||||||||
Sbjct: 772 ctcctggtggcgctggaggcc 792



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>emb|AJ223970.1|MDAJ39670 Streptomyces ambofaciens srmA, mgtA genes
          Length = 2070

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 417 cccggggtgctcgtcggcgag 437
           |||||||||||||||||||||
Sbjct: 732 cccggggtgctcgtcggcgag 752



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>ref|NM_129367.3| Arabidopsis thaliana ATGPAT6/GPAT6; 1-acylglycerol-3-phosphate
           O-acyltransferase/ acyltransferase AT2G38110
           (ATGPAT6/GPAT6) mRNA, complete cds
          Length = 1845

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 518 acttcatgtccatatgcaaggaag 541
           ||||||||||||| ||||||||||
Sbjct: 747 acttcatgtccatctgcaaggaag 770



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>ref|NM_197089.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0029C15.14), mRNA
          Length = 642

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 97  cggtgccgttcgtgtacgtg 116
           ||||||||||||||||||||
Sbjct: 301 cggtgccgttcgtgtacgtg 282



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>gb|BC107183.1| Mus musculus vomeronasal 1 receptor, B1, mRNA (cDNA clone
           MGC:130072 IMAGE:40050746), complete cds
          Length = 941

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 437 gcacaagaagcaggcccgtc 456
           ||||||||||||||||||||
Sbjct: 639 gcacaagaagcaggcccgtc 658



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>gb|AY743675.1| Bos taurus alpha-1 type II collagen (COL2A1) gene, complete sequence
          Length = 30941

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   gctggccatcagcaccctgg 159
             ||||||||||||||||||||
Sbjct: 23233 gctggccatcagcaccctgg 23214



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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 191    gagcatcgagatggcggcgc 210
              ||||||||||||||||||||
Sbjct: 451615 gagcatcgagatggcggcgc 451634



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>gb|AC165969.5| Mus musculus BAC clone RP23-141K11 from chromosome 6, complete sequence
          Length = 190936

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 437    gcacaagaagcaggcccgtc 456
              ||||||||||||||||||||
Sbjct: 170649 gcacaagaagcaggcccgtc 170630



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>gb|AC123549.5| Mus musculus BAC clone RP24-91K17 from chromosome 6, complete sequence
          Length = 182759

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 437   gcacaagaagcaggcccgtc 456
             ||||||||||||||||||||
Sbjct: 16916 gcacaagaagcaggcccgtc 16897



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>gb|AC117196.3| Mus musculus BAC clone RP23-108H19 from 8, complete sequence
          Length = 185947

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 335    ggagttcctcggtgccgaca 354
              ||||||||||||||||||||
Sbjct: 102742 ggagttcctcggtgccgaca 102761



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>gb|BC115706.1| Mus musculus vomeronasal 1 receptor, B1, mRNA (cDNA clone
           IMAGE:40050947), partial cds
          Length = 931

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 437 gcacaagaagcaggcccgtc 456
           ||||||||||||||||||||
Sbjct: 638 gcacaagaagcaggcccgtc 657



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>ref|NM_053225.1| Mus musculus vomeronasal 1 receptor, B1 (V1rb1), mRNA
          Length = 933

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 437 gcacaagaagcaggcccgtc 456
           ||||||||||||||||||||
Sbjct: 639 gcacaagaagcaggcccgtc 658



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>gb|AY114657.1| Arabidopsis thaliana unknown protein (At2g38110) mRNA, complete cds
          Length = 1661

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 518 acttcatgtccatatgcaaggaag 541
           ||||||||||||| ||||||||||
Sbjct: 617 acttcatgtccatctgcaaggaag 640



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>gb|AF129005.1|AF129005 Mus musculus VNO olfactory cluster
          Length = 198515

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 437   gcacaagaagcaggcccgtc 456
             ||||||||||||||||||||
Sbjct: 17848 gcacaagaagcaggcccgtc 17867



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>gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 genomic sequence, complete
             sequence
          Length = 148816

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    cggtgccgttcgtgtacgtg 116
             ||||||||||||||||||||
Sbjct: 20752 cggtgccgttcgtgtacgtg 20733



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>gb|AY062721.1| Arabidopsis thaliana Unknown protein (At2g38110; F16M14.4) mRNA,
           complete cds
          Length = 1793

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 518 acttcatgtccatatgcaaggaag 541
           ||||||||||||| ||||||||||
Sbjct: 747 acttcatgtccatctgcaaggaag 770



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>emb|BX821016.1|CNS0A85B Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH91ZC11 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1756

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 518 acttcatgtccatatgcaaggaag 541
           ||||||||||||| ||||||||||
Sbjct: 733 acttcatgtccatctgcaaggaag 756



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>gb|AF291489.1|AF291489 Mus musculus vomeronasal receptor V1RB1 (V1rb1) gene, complete cds
          Length = 933

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 437 gcacaagaagcaggcccgtc 456
           ||||||||||||||||||||
Sbjct: 639 gcacaagaagcaggcccgtc 658



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>dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, complete sequence
          Length = 256992

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 167  ctccgtggccgggctcaagg 186
            ||||||||||||||||||||
Sbjct: 8520 ctccgtggccgggctcaagg 8501



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 330     gccagggagttcctcggtgccgac 353
               ||||| ||||||||||||||||||
Sbjct: 1975836 gccagcgagttcctcggtgccgac 1975813



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>emb|AL954321.8| Mouse DNA sequence from clone RP23-407M22 on chromosome 4, complete
             sequence
          Length = 65324

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 513   tttcaacttcatgtccatat 532
             ||||||||||||||||||||
Sbjct: 60757 tttcaacttcatgtccatat 60776



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>gb|U22894.1|SLU22894 Streptomyces lividans amplifiable element AUD1
          Length = 20996

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 81  gtggcgctgctcctgtcggtgccg 104
           ||||||||||||||| ||||||||
Sbjct: 883 gtggcgctgctcctgccggtgccg 906



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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    ctccgtggccgggctcaagg 186
              ||||||||||||||||||||
Sbjct: 222908 ctccgtggccgggctcaagg 222889



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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 50      ggcgctggaggccggcagcg 69
               ||||||||||||||||||||
Sbjct: 2542534 ggcgctggaggccggcagcg 2542515



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>dbj|AB062902.1| Mus musculus V1RA5 gene for vomeronasal receptor 1 A5, complete cds
          Length = 933

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 437 gcacaagaagcaggcccgtc 456
           ||||||||||||||||||||
Sbjct: 639 gcacaagaagcaggcccgtc 658


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,720,608
Number of Sequences: 3902068
Number of extensions: 3720608
Number of successful extensions: 72594
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71643
Number of HSP's gapped (non-prelim): 942
length of query: 569
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 546
effective length of database: 17,143,297,704
effective search space: 9360240546384
effective search space used: 9360240546384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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