ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags10c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009604.1| Triticum aestivum clone wre1n.pk0082.c6:fis, full... 714 0.0
2gb|AY011123.1| Dactylis glomerata mitochondrial processing pepti... 400 e-108
3ref|NM_189667.1| Oryza sativa (japonica cultivar-group), predic... 272 9e-70
4dbj|AK101856.1| Oryza sativa (japonica cultivar-group) cDNA clon... 272 9e-70
5dbj|AK071930.1| Oryza sativa (japonica cultivar-group) cDNA clon... 272 9e-70
6gb|AY108609.1| Zea mays PCO088346 mRNA sequence 184 2e-43
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
8dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
9gb|AC151795.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 42 1.5
10gb|AC055772.16| Mus musculus chromosome 12, clone RP23-291K4, co... 42 1.5
11gb|AC183833.2| Pan troglodytes BAC clone CH251-141C5 from chromo... 40 6.0
12gb|AC183613.3| Pan troglodytes BAC clone CH251-171F23 from chrom... 40 6.0
13gb|AC129310.6| Mus musculus BAC clone RP24-348D18 from chromosom... 40 6.0
14gb|AC125058.4| Mus musculus BAC clone RP23-400N6 from chromosome... 40 6.0
15gb|AC111012.3| Mus musculus BAC clone RP24-146N3 from 8, complet... 40 6.0
16emb|AL136116.11| Human DNA sequence from clone RP1-95L4 on chrom... 40 6.0
17emb|Y16624.1|SSP16624 Sus sp. PMAP-23 gene, exon 1 to exon 4 40 6.0
18emb|CR380959.1| Candida glabrata strain CBS138 chromosome M comp... 40 6.0
19gb|AC153550.10| Mus musculus 10 BAC RP23-250H23 (Roswell Park Ca... 40 6.0
20gb|AC093154.2| Homo sapiens chromosome 1 clone RP3-445O10, compl... 40 6.0
21gb|AC156274.8| Mus musculus 10 BAC RP24-286P15 (Roswell Park Can... 40 6.0
22gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complet... 40 6.0

>gb|BT009604.1| Triticum aestivum clone wre1n.pk0082.c6:fis, full insert mRNA
           sequence
          Length = 1676

 Score =  714 bits (360), Expect = 0.0
 Identities = 427/449 (95%), Gaps = 1/449 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaattggtgcaataggtggcatgtgcgaaagtgtcagccaaccgtgagctcatgagcta 60
           |||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||
Sbjct: 212 gaaattggtgcaataggtggca-gtgcgaaagcatcagccaaccgtgagctcatgagcta 270

                                                                       
Query: 61  cagttatggagcccttaagacttacatgcctgaaatggtggaagtgctagttgattgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cagttatggagcccttaagacttacatgcctgaaatggtggaagtgctagttgattgtgt 330

                                                                       
Query: 121 gcggaatccanctttacttgattgggaagnnaaggaagagataatgaaactaaaggcaga 180
           | | |||||  ||||||||||||||||||  ||||||||||||||||| |||||||||||
Sbjct: 331 gagaaatcctgctttacttgattgggaagtcaaggaagagataatgaatctaaaggcaga 390

                                                                       
Query: 181 gcttgcagaagcttcaagtaatccggaagctttccttttggatgctcttcattccagtgg 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 391 gcttgcagaagcttcaagtaatccggaaactttccttttggatgctcttcattccagtgg 450

                                                                       
Query: 241 ctattctggtgccttggcaaacccattgattgcctcagagtcttcaattagcagattaaa 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 451 ctattctggtgccttggcaaacccattgattgcctcagaggcttcaattagcagattaaa 510

                                                                       
Query: 301 tacagatgttctggaagaatttcttgccttaaactacacttccccgcgaattgttctagc 360
           ||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 511 taccgatgttctggaagaatttcttgctttgaactacacttccccgcgaattgttctagc 570

                                                                       
Query: 361 tgcatctggtgtggaccacgatgaacttgtatccattgctgaaccactcctgtctgatat 420
           ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 571 tgcgtctggtgtggaccacgatgaacttgtatcaattgctgaaccactcctgtctgacat 630

                                        
Query: 421 tcgtaccgcaactggaacagtaaagccaa 449
           ||  || ||||||||||||| ||||||||
Sbjct: 631 tcccactgcaactggaacaggaaagccaa 659



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>gb|AY011123.1| Dactylis glomerata mitochondrial processing peptidase alpha-chain
           precursor (DGMPP) mRNA, complete cds
          Length = 1799

 Score =  400 bits (202), Expect = e-108
 Identities = 355/407 (87%)
 Strand = Plus / Plus

                                                                       
Query: 43  ccgtgagctcatgagctacagttatggagcccttaagacttacatgcctgaaatggtgga 102
           |||||||||||  ||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct: 539 ccgtgagctcacaagctacagttatggagctctaaagacttacatgcctgaaatggttga 598

                                                                       
Query: 103 agtgctagttgattgtgtgcggaatccanctttacttgattgggaagnnaaggaagagat 162
           ||| || ||||||||||| ||||||||  |||| ||||| |||||||  |||||||||||
Sbjct: 599 agttcttgttgattgtgttcggaatcctgctttgcttgactgggaagtaaaggaagagat 658

                                                                       
Query: 163 aatgaaactaaaggcagagcttgcagaagcttcaagtaatccggaagctttccttttgga 222
           ||  ||||| ||||||||||||||| ||||||||| ||||||  ||  |||||| |||||
Sbjct: 659 aacaaaactgaaggcagagcttgcaaaagcttcaattaatccaaaaagtttcctcttgga 718

                                                                       
Query: 223 tgctcttcattccagtggctattctggtgccttggcaaacccattgattgcctcagagtc 282
            || || ||||||  ||||||||||||||| ||||||||||||||||||||||||||  |
Sbjct: 719 cgccctccattccgctggctattctggtgctttggcaaacccattgattgcctcagaagc 778

                                                                       
Query: 283 ttcaattagcagattaaatacagatgttctggaagaatttcttgccttaaactacacttc 342
           ||| |||||||||||||||||||||||||||||||| || || ||    |||||||||||
Sbjct: 779 ttccattagcagattaaatacagatgttctggaagacttcctagctgagaactacacttc 838

                                                                       
Query: 343 cccgcgaattgttctagctgcatctggtgtggaccacgatgaacttgtatccattgctga 402
           | | |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 839 ctctcgaattgttctagctgcatctggtgtcgaccatgatgaacttgtatcaattgctga 898

                                                          
Query: 403 accactcctgtctgatattcgtaccgcaactggaacagtaaagccaa 449
           ||| ||||||||||| ||||  |  ||||||||||||| ||||||||
Sbjct: 899 acctctcctgtctgacattcccaatgcaactggaacagcaaagccaa 945



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>ref|NM_189667.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2478

 Score =  272 bits (137), Expect = 9e-70
 Identities = 319/378 (84%), Gaps = 2/378 (0%)
 Strand = Plus / Plus

                                                                        
Query: 41   aaccgtgagctcatgagctacagttatggagcccttaagacttacatgcctgaaatggtg 100
            ||||||||| | |||||||||||||||| |||||| || |||||||||||||||||||| 
Sbjct: 1147 aaccgtgagatgatgagctacagttatgcagccctgaaaacttacatgcctgaaatggtt 1206

                                                                        
Query: 101  gaagtgctagttgattgtgtgcggaatccanctttacttgattgggaagnnaaggaagag 160
            || |||||  |||||||||| || |||||  |||| |||||||||||||  |||||| ||
Sbjct: 1207 gaggtgcttattgattgtgtacgcaatcctgcttttcttgattgggaagtcaaggaacag 1266

                                                                        
Query: 161  ataatgaaactaaaggcagagcttgcagaagcttcaagtaatccggaagctttccttttg 220
            ||||||||||| ||||||||||||||||||||||||||||| || ||| |||| ||||||
Sbjct: 1267 ataatgaaactgaaggcagagcttgcagaagcttcaagtaaccctgaaacttttcttttg 1326

                                                                        
Query: 221  gatgctcttcattccagtggctattctggtgccttggcaaacccattgattgcctcagag 280
            || ||||||||||| | ||| ||||||||||| ||||||| |||  ||||||||||||| 
Sbjct: 1327 gaggctcttcattctactggttattctggtgctttggcaacccctctgattgcctcagaa 1386

                                                                        
Query: 281  tcttcaattagcagattaaatacagatgttctggaagaatttcttgcctta-aactacac 339
            || ||| ||||| |||| |||||  |||| || |||  | |||||  || | || |||||
Sbjct: 1387 tcctcagttagccgattgaatacgaatgtcctagaa-tacttcttagctgagaattacac 1445

                                                                        
Query: 340  ttccccgcgaattgttctagctgcatctggtgtggaccacgatgaacttgtatccattgc 399
            | | || |||||||||||||||||| | ||||| || || |||||| | ||||| |||||
Sbjct: 1446 tgctccccgaattgttctagctgcaacaggtgttgatcatgatgaattggtatctattgc 1505

                              
Query: 400  tgaaccactcctgtctga 417
            ||||||||| ||||||||
Sbjct: 1506 tgaaccacttctgtctga 1523



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>dbj|AK101856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069O10, full
           insert sequence
          Length = 2012

 Score =  272 bits (137), Expect = 9e-70
 Identities = 319/378 (84%), Gaps = 2/378 (0%)
 Strand = Plus / Plus

                                                                       
Query: 41  aaccgtgagctcatgagctacagttatggagcccttaagacttacatgcctgaaatggtg 100
           ||||||||| | |||||||||||||||| |||||| || |||||||||||||||||||| 
Sbjct: 591 aaccgtgagatgatgagctacagttatgcagccctgaaaacttacatgcctgaaatggtt 650

                                                                       
Query: 101 gaagtgctagttgattgtgtgcggaatccanctttacttgattgggaagnnaaggaagag 160
           || |||||  |||||||||| || |||||  |||| |||||||||||||  |||||| ||
Sbjct: 651 gaggtgcttattgattgtgtacgcaatcctgcttttcttgattgggaagtcaaggaacag 710

                                                                       
Query: 161 ataatgaaactaaaggcagagcttgcagaagcttcaagtaatccggaagctttccttttg 220
           ||||||||||| ||||||||||||||||||||||||||||| || ||| |||| ||||||
Sbjct: 711 ataatgaaactgaaggcagagcttgcagaagcttcaagtaaccctgaaacttttcttttg 770

                                                                       
Query: 221 gatgctcttcattccagtggctattctggtgccttggcaaacccattgattgcctcagag 280
           || ||||||||||| | ||| ||||||||||| ||||||| |||  ||||||||||||| 
Sbjct: 771 gaggctcttcattctactggttattctggtgctttggcaacccctctgattgcctcagaa 830

                                                                       
Query: 281 tcttcaattagcagattaaatacagatgttctggaagaatttcttgcctta-aactacac 339
           || ||| ||||| |||| |||||  |||| || |||  | |||||  || | || |||||
Sbjct: 831 tcctcagttagccgattgaatacgaatgtcctagaa-tacttcttagctgagaattacac 889

                                                                       
Query: 340 ttccccgcgaattgttctagctgcatctggtgtggaccacgatgaacttgtatccattgc 399
           | | || |||||||||||||||||| | ||||| || || |||||| | ||||| |||||
Sbjct: 890 tgctccccgaattgttctagctgcaacaggtgttgatcatgatgaattggtatctattgc 949

                             
Query: 400 tgaaccactcctgtctga 417
           ||||||||| ||||||||
Sbjct: 950 tgaaccacttctgtctga 967



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>dbj|AK071930.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073N24, full
           insert sequence
          Length = 1991

 Score =  272 bits (137), Expect = 9e-70
 Identities = 319/378 (84%), Gaps = 2/378 (0%)
 Strand = Plus / Plus

                                                                       
Query: 41  aaccgtgagctcatgagctacagttatggagcccttaagacttacatgcctgaaatggtg 100
           ||||||||| | |||||||||||||||| |||||| || |||||||||||||||||||| 
Sbjct: 585 aaccgtgagatgatgagctacagttatgcagccctgaaaacttacatgcctgaaatggtt 644

                                                                       
Query: 101 gaagtgctagttgattgtgtgcggaatccanctttacttgattgggaagnnaaggaagag 160
           || |||||  |||||||||| || |||||  |||| |||||||||||||  |||||| ||
Sbjct: 645 gaggtgcttattgattgtgtacgcaatcctgcttttcttgattgggaagtcaaggaacag 704

                                                                       
Query: 161 ataatgaaactaaaggcagagcttgcagaagcttcaagtaatccggaagctttccttttg 220
           ||||||||||| ||||||||||||||||||||||||||||| || ||| |||| ||||||
Sbjct: 705 ataatgaaactgaaggcagagcttgcagaagcttcaagtaaccctgaaacttttcttttg 764

                                                                       
Query: 221 gatgctcttcattccagtggctattctggtgccttggcaaacccattgattgcctcagag 280
           || ||||||||||| | ||| ||||||||||| ||||||| |||  ||||||||||||| 
Sbjct: 765 gaggctcttcattctactggttattctggtgctttggcaacccctctgattgcctcagaa 824

                                                                       
Query: 281 tcttcaattagcagattaaatacagatgttctggaagaatttcttgcctta-aactacac 339
           || ||| ||||| |||| |||||  |||| || |||  | |||||  || | || |||||
Sbjct: 825 tcctcagttagccgattgaatacgaatgtcctagaa-tacttcttagctgagaattacac 883

                                                                       
Query: 340 ttccccgcgaattgttctagctgcatctggtgtggaccacgatgaacttgtatccattgc 399
           | | || |||||||||||||||||| | ||||| || || |||||| | ||||| |||||
Sbjct: 884 tgctccccgaattgttctagctgcaacaggtgttgatcatgatgaattggtatctattgc 943

                             
Query: 400 tgaaccactcctgtctga 417
           ||||||||| ||||||||
Sbjct: 944 tgaaccacttctgtctga 961



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>gb|AY108609.1| Zea mays PCO088346 mRNA sequence
          Length = 2030

 Score =  184 bits (93), Expect = 2e-43
 Identities = 340/422 (80%), Gaps = 1/422 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaattggtgcaataggtggcatgtgcgaaagtgtcagccaaccgtgagctcatgagcta 60
           |||||||  ||||||||||||| |||| ||||  || || | ||||||| | ||||||||
Sbjct: 568 gaaattgaggcaataggtggca-gtgccaaagcatctgctagccgtgagatgatgagcta 626

                                                                       
Query: 61  cagttatggagcccttaagacttacatgcctgaaatggtggaagtgctagttgattgtgt 120
           || ||| |||||||| ||||||||||||||||||||||| || |||||  ||||||||||
Sbjct: 627 cacttacggagccctgaagacttacatgcctgaaatggttgaggtgcttattgattgtgt 686

                                                                       
Query: 121 gcggaatccanctttacttgattgggaagnnaaggaagagataatgaaactaaaggcaga 180
            || || ||  |||| ||||||||||| |  |||||| ||||  |||  ||| |||||||
Sbjct: 687 acgcaaccctgcttttcttgattgggaggtcaaggaacagattttgaggctacaggcaga 746

                                                                       
Query: 181 gcttgcagaagcttcaagtaatccggaagctttccttttggatgctcttcattccagtgg 240
           ||||||| || | ||||||  ||| |||  ||| |||||||| ||||||||||| | |||
Sbjct: 747 gcttgcaaaatcatcaagttttcctgaaaattttcttttggaggctcttcattctactgg 806

                                                                       
Query: 241 ctattctggtgccttggcaaacccattgattgcctcagagtcttcaattagcagattaaa 300
           |||||||||||| || ||||| ||| | ||||   |||| | |||| |||||||||| ||
Sbjct: 807 ctattctggtgctttagcaaatccactaattgtgccagaatattcagttagcagattgaa 866

                                                                       
Query: 301 tacagatgttctggaagaatttcttgccttaaactacacttccccgcgaattgttctagc 360
           | ||||||| |||||| ||||| |  |    ||||||||| |  | ||||||||||||||
Sbjct: 867 tgcagatgtcctggaacaatttataactgagaactacactgcttcccgaattgttctagc 926

                                                                       
Query: 361 tgcatctggtgtggaccacgatgaacttgtatccattgctgaaccactcctgtctgatat 420
           |||||| ||||| || || |||||| | ||||| ||||| ||||| || |||||||| ||
Sbjct: 927 tgcatcaggtgttgatcatgatgaattggtatctattgccgaaccccttctgtctgacat 986

             
Query: 421 tc 422
           ||
Sbjct: 987 tc 988



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  145 bits (73), Expect = 1e-31
 Identities = 127/145 (87%)
 Strand = Plus / Plus

                                                                           
Query: 159     agataatgaaactaaaggcagagcttgcagaagcttcaagtaatccggaagctttccttt 218
               ||||||||||||| ||||||||||||||||||||||||||||| || ||| |||| ||||
Sbjct: 4892405 agataatgaaactgaaggcagagcttgcagaagcttcaagtaaccctgaaacttttcttt 4892464

                                                                           
Query: 219     tggatgctcttcattccagtggctattctggtgccttggcaaacccattgattgcctcag 278
               |||| ||||||||||| | ||| ||||||||||| ||||||| |||  ||||||||||||
Sbjct: 4892465 tggaggctcttcattctactggttattctggtgctttggcaacccctctgattgcctcag 4892524

                                        
Query: 279     agtcttcaattagcagattaaatac 303
               | || ||| ||||| |||| |||||
Sbjct: 4892525 aatcctcagttagccgattgaatac 4892549



 Score =  111 bits (56), Expect = 2e-21
 Identities = 101/117 (86%)
 Strand = Plus / Plus

                                                                           
Query: 41      aaccgtgagctcatgagctacagttatggagcccttaagacttacatgcctgaaatggtg 100
               ||||||||| | |||||||||||||||| |||||| || |||||||||||||||||||| 
Sbjct: 4892198 aaccgtgagatgatgagctacagttatgcagccctgaaaacttacatgcctgaaatggtt 4892257

                                                                        
Query: 101     gaagtgctagttgattgtgtgcggaatccanctttacttgattgggaagnnaaggaa 157
               || |||||  |||||||||| || |||||  |||| |||||||||||||  ||||||
Sbjct: 4892258 gaggtgcttattgattgtgtacgcaatcctgcttttcttgattgggaagtcaaggaa 4892314



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                           
Query: 347     cgaattgttctagctgcatctggtgtggaccacgatgaacttgtatccattgctgaacca 406
               |||||||||||||||||| | ||||| || || |||||| | ||||| ||||||||||||
Sbjct: 4892692 cgaattgttctagctgcaacaggtgttgatcatgatgaattggtatctattgctgaacca 4892751

                          
Query: 407     ctcctgtctga 417
               || ||||||||
Sbjct: 4892752 cttctgtctga 4892762



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>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0710E05
          Length = 179714

 Score =  145 bits (73), Expect = 1e-31
 Identities = 127/145 (87%)
 Strand = Plus / Plus

                                                                          
Query: 159    agataatgaaactaaaggcagagcttgcagaagcttcaagtaatccggaagctttccttt 218
              ||||||||||||| ||||||||||||||||||||||||||||| || ||| |||| ||||
Sbjct: 137054 agataatgaaactgaaggcagagcttgcagaagcttcaagtaaccctgaaacttttcttt 137113

                                                                          
Query: 219    tggatgctcttcattccagtggctattctggtgccttggcaaacccattgattgcctcag 278
              |||| ||||||||||| | ||| ||||||||||| ||||||| |||  ||||||||||||
Sbjct: 137114 tggaggctcttcattctactggttattctggtgctttggcaacccctctgattgcctcag 137173

                                       
Query: 279    agtcttcaattagcagattaaatac 303
              | || ||| ||||| |||| |||||
Sbjct: 137174 aatcctcagttagccgattgaatac 137198



 Score =  111 bits (56), Expect = 2e-21
 Identities = 101/117 (86%)
 Strand = Plus / Plus

                                                                          
Query: 41     aaccgtgagctcatgagctacagttatggagcccttaagacttacatgcctgaaatggtg 100
              ||||||||| | |||||||||||||||| |||||| || |||||||||||||||||||| 
Sbjct: 136847 aaccgtgagatgatgagctacagttatgcagccctgaaaacttacatgcctgaaatggtt 136906

                                                                       
Query: 101    gaagtgctagttgattgtgtgcggaatccanctttacttgattgggaagnnaaggaa 157
              || |||||  |||||||||| || |||||  |||| |||||||||||||  ||||||
Sbjct: 136907 gaggtgcttattgattgtgtacgcaatcctgcttttcttgattgggaagtcaaggaa 136963



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                          
Query: 347    cgaattgttctagctgcatctggtgtggaccacgatgaacttgtatccattgctgaacca 406
              |||||||||||||||||| | ||||| || || |||||| | ||||| ||||||||||||
Sbjct: 137341 cgaattgttctagctgcaacaggtgttgatcatgatgaattggtatctattgctgaacca 137400

                         
Query: 407    ctcctgtctga 417
              || ||||||||
Sbjct: 137401 cttctgtctga 137411



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>gb|AC151795.1| Ornithorhynchus anatinus chromosome UNK clone OABb-95A1, complete
             sequence
          Length = 106226

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 320   tttcttgccttaaactacacttccc 344
             |||||||||| ||||||||||||||
Sbjct: 54364 tttcttgcctgaaactacacttccc 54388



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>gb|AC055772.16| Mus musculus chromosome 12, clone RP23-291K4, complete sequence
          Length = 168350

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 252    ccttggcaaacccattgattg 272
              |||||||||||||||||||||
Sbjct: 119986 ccttggcaaacccattgattg 120006



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>gb|AC183833.2| Pan troglodytes BAC clone CH251-141C5 from chromosome 7, complete
             sequence
          Length = 155911

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   ctggaagaatttcttgcctt 330
             ||||||||||||||||||||
Sbjct: 30398 ctggaagaatttcttgcctt 30379



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>gb|AC183613.3| Pan troglodytes BAC clone CH251-171F23 from chromosome 7, complete
             sequence
          Length = 180545

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 311   ctggaagaatttcttgcctt 330
             ||||||||||||||||||||
Sbjct: 26163 ctggaagaatttcttgcctt 26182



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>gb|AC129310.6| Mus musculus BAC clone RP24-348D18 from chromosome 8, complete sequence
          Length = 130946

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   ttaaatacagatgttctgga 315
             ||||||||||||||||||||
Sbjct: 59332 ttaaatacagatgttctgga 59313



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>gb|AC125058.4| Mus musculus BAC clone RP23-400N6 from chromosome 14, complete sequence
          Length = 195696

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    aaggaagagataatgaaact 171
              ||||||||||||||||||||
Sbjct: 153615 aaggaagagataatgaaact 153596



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>gb|AC111012.3| Mus musculus BAC clone RP24-146N3 from 8, complete sequence
          Length = 155637

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   ttaaatacagatgttctgga 315
             ||||||||||||||||||||
Sbjct: 15249 ttaaatacagatgttctgga 15230



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>emb|AL136116.11| Human DNA sequence from clone RP1-95L4 on chromosome 6 Contains the 3'
             end of the gene for androgen induced protein (AIG-1)
             (CGI-103) (includes FLJ10485), a pseudogene similar to
             actin genes, a ribosomal protein L31 (RPL31) pseudogene
             and a pseudogene similar to hypothetical proteins PRO2207
             and similar to presenilins associated rhomboid-like
             protein, complete sequence
          Length = 100815

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   gatgttctggaagaatttct 324
             ||||||||||||||||||||
Sbjct: 16749 gatgttctggaagaatttct 16768



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>emb|Y16624.1|SSP16624 Sus sp. PMAP-23 gene, exon 1 to exon 4
          Length = 3253

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 322  tcttgccttaaactacactt 341
            ||||||||||||||||||||
Sbjct: 2897 tcttgccttaaactacactt 2916



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>emb|CR380959.1| Candida glabrata strain CBS138 chromosome M complete sequence
          Length = 1400893

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    gaagaatttcttgccttaaa 333
              ||||||||||||||||||||
Sbjct: 884594 gaagaatttcttgccttaaa 884613



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>gb|AC153550.10| Mus musculus 10 BAC RP23-250H23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 168208

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 322    tcttgccttaaactacactt 341
              ||||||||||||||||||||
Sbjct: 103758 tcttgccttaaactacactt 103777



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>gb|AC093154.2| Homo sapiens chromosome 1 clone RP3-445O10, complete sequence
          Length = 145658

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   gattaaatacagatgttctg 313
             ||||||||||||||||||||
Sbjct: 72531 gattaaatacagatgttctg 72550



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>gb|AC156274.8| Mus musculus 10 BAC RP24-286P15 (Roswell Park Cancer Institute
            (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 177364

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 322  tcttgccttaaactacactt 341
            ||||||||||||||||||||
Sbjct: 8880 tcttgccttaaactacactt 8861



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>gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complete sequence
          Length = 198162

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   ttaaatacagatgttctgga 315
             ||||||||||||||||||||
Sbjct: 24992 ttaaatacagatgttctgga 25011


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,609,433
Number of Sequences: 3902068
Number of extensions: 3609433
Number of successful extensions: 98952
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98886
Number of HSP's gapped (non-prelim): 63
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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