Clone Information

BLAST Search Result

Clone Name	bags10b24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR pro...	106	5e-23
2	Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915	80	6e-15
3	YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I	60	5e-09
4	PTCD1_MOUSE (Q8C2E4) Pentatricopeptide repeat protein 1	51	2e-06
5	LPPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP1...	48	2e-05
6	PTCD1_PONPY (Q5R655) Pentatricopeptide repeat protein 1	42	0.001
7	PTCD1_HUMAN (O75127) Pentatricopeptide repeat protein 1	42	0.002
8	RPOM_MOUSE (Q8BKF1) DNA-directed RNA polymerase, mitochondrial p...	36	0.077
9	PT309_YEAST (P32522) Protein PET309, mitochondrial precursor	36	0.077
10	AEP3_KLULA (Q6CIF3) ATPase expression protein 3	35	0.13
11	RIR2_NEUCR (Q9C167) Ribonucleoside-diphosphate reductase small c...	33	0.50
12	CLPC_ODOSI (P49574) ATP-dependent Clp protease ATP-binding subun...	33	0.65
13	RT27_HUMAN (Q92552) Mitochondrial 28S ribosomal protein S27 (S27...	33	0.65
14	EF2_METKA (Q8TXJ4) Elongation factor 2 (EF-2) [Contains: Mka fus...	33	0.85
15	RPOM_HUMAN (O00411) DNA-directed RNA polymerase, mitochondrial p...	33	0.85
16	YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein P...	32	1.1
17	RIR2_RAT (Q4KLN6) Ribonucleoside-diphosphate reductase M2 subuni...	32	1.4
18	POLB_MAIZE (P15718) Putative Pol polyprotein from transposon ele...	32	1.4
19	TFC4_YEAST (P33339) Transcription factor tau 131 kDa subunit (TF...	32	1.4
20	RIR2_MESAU (Q60561) Ribonucleoside-diphosphate reductase M2 subu...	32	1.4
21	LEU2_SHIDS (Q32K22) 3-isopropylmalate dehydratase large subunit ...	31	3.2
22	LEU2_SHIBS (Q326G3) 3-isopropylmalate dehydratase large subunit ...	31	3.2
23	LEU2_ECOLI (P0A6A6) 3-isopropylmalate dehydratase large subunit ...	31	3.2
24	LEU2_ECOL6 (P0A6A7) 3-isopropylmalate dehydratase large subunit ...	31	3.2
25	LEU2_ECO57 (Q8XA00) 3-isopropylmalate dehydratase large subunit ...	31	3.2
26	CDC27_YEAST (P38042) Anaphase-promoting complex subunit CDC27 (C...	30	4.2
27	IF2_DEHSC (Q3ZXU3) Translation initiation factor IF-2	30	4.2
28	LEU21_SALCH (Q57TE8) 3-isopropylmalate dehydratase large subunit...	30	5.5
29	AEP3_CANGA (Q6FKT1) ATPase expression protein 3	30	5.5
30	GATE_PYRKO (Q5JI74) Glutamyl-tRNA(Gln) amidotransferase subunit ...	30	5.5
31	WSC4_YEAST (P38739) Cell wall integrity and stress response comp...	30	5.5
32	LEU2_SALTI (Q8Z9I2) 3-isopropylmalate dehydratase large subunit ...	30	5.5
33	LEU21_SALTY (P15717) 3-isopropylmalate dehydratase large subunit...	30	5.5
34	NIP7_RAT (Q9WV50) 60S ribosome subunit biogenesis protein NIP7 h...	30	7.2
35	NIP7_MOUSE (Q9CXK8) 60S ribosome subunit biogenesis protein NIP7...	30	7.2
36	NIP7_HUMAN (Q9Y221) 60S ribosome subunit biogenesis protein NIP7...	30	7.2
37	LEU2_SHISS (Q3Z5T8) 3-isopropylmalate dehydratase large subunit ...	29	9.4
38	LPXK_SHISS (Q3Z3K6) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.13...	29	9.4
39	LPXK_SHIFL (Q83RY7) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.13...	29	9.4
40	LPXK_SHIDS (Q32E35) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.13...	29	9.4
41	LPXK_SHIBS (Q31YT5) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.13...	29	9.4
42	LPXK_ECOLI (P27300) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.13...	29	9.4
43	LPXK_ECO57 (Q8XDH0) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.13...	29	9.4
44	RIR2_BRARE (P79733) Ribonucleoside-diphosphate reductase M2 subu...	29	9.4
45	YQKF_BACSU (P54569) Hypothetical oxidoreductase yqkF (EC 1.-.-.-)	29	9.4
46	TRPB_HELPY (P56142) Tryptophan synthase beta chain (EC 4.2.1.20)	29	9.4

>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)|
           (Fertility restorer) (Restorer for CMS)
          Length = 791

 Score =  106 bits (265), Expect = 5e-23
 Identities = 50/141 (35%), Positives = 82/141 (58%)
 Frame = +1

Query: 16  KEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVY 195
           K G  +EAR++F  M  +G +P + TY  ++ GY   G++ E       M + G+ PD Y
Sbjct: 313 KNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHY 372

Query: 196 TYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNM 375
            ++ L+  +   GKVD A+ +F +M+Q+G  PN V Y A+I  L K GR E+A  +++ M
Sbjct: 373 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432

Query: 376 LAAGLTPDDTLYSMLVGSLHT 438
           +  GL+P + +Y+ L+  L T
Sbjct: 433 IDEGLSPGNIVYNSLIHGLCT 453



 Score = 97.4 bits (241), Expect = 3e-20
 Identities = 47/147 (31%), Positives = 87/147 (59%)
 Frame = +1

Query: 16  KEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVY 195
           KEG ++E+ +LF  M   G +P+V+TYN +I+GY  +G + EA +    M   GL P+  
Sbjct: 488 KEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTV 547

Query: 196 TYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNM 375
           TY+ L++G+C   +++ AL LF+EM+  G  P+++ Y  ++ GL +  R+  A + Y  +
Sbjct: 548 TYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI 607

Query: 376 LAAGLTPDDTLYSMLVGSLHTDKRKDE 456
             +G   + + Y++++  L  +K  D+
Sbjct: 608 TESGTQIELSTYNIILHGLCKNKLTDD 634



 Score = 97.1 bits (240), Expect = 4e-20
 Identities = 49/136 (36%), Positives = 79/136 (58%)
 Frame = +1

Query: 16  KEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVY 195
           KEGD  +A   + +M  +G  P VVTYN +I    K+ ++ +A      M K G++PD  
Sbjct: 208 KEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCM 267

Query: 196 TYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNM 375
           TY +++HG+C +G+   A+   ++M+  G +P+VV Y+ L+  L K GR  EA + +D+M
Sbjct: 268 TYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSM 327

Query: 376 LAAGLTPDDTLYSMLV 423
              GL P+ T Y  L+
Sbjct: 328 TKRGLKPEITTYGTLL 343



 Score = 93.2 bits (230), Expect = 5e-19
 Identities = 46/137 (33%), Positives = 80/137 (58%)
 Frame = +1

Query: 37  ARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVH 216
           A  L  +M  +G   + + +N +ID + K G + E+E+  + M + G+ P+V TY  L++
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLIN 519

Query: 217 GHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTP 396
           G+C+ GK+D A++L   M   G KPN V Y+ LI+G  K  R E+A   +  M ++G++P
Sbjct: 520 GYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSP 579

Query: 397 DDTLYSMLVGSLHTDKR 447
           D   Y++++  L   +R
Sbjct: 580 DIITYNIILQGLFQTRR 596



 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 47/132 (35%), Positives = 71/132 (53%)
 Frame = +1

Query: 28  MVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAA 207
           M +A  +   M   G  P  +TYN ++ GY  SG  +EA  F K+M   G+ PDV TY+ 
Sbjct: 247 MDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSL 306

Query: 208 LVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAG 387
           L+   C NG+   A ++F+ M +RG KP +  Y  L+ G A +G   E     D M+  G
Sbjct: 307 LMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 366

Query: 388 LTPDDTLYSMLV 423
           + PD  ++S+L+
Sbjct: 367 IHPDHYVFSILI 378



 Score = 85.9 bits (211), Expect = 8e-17
 Identities = 42/142 (29%), Positives = 75/142 (52%)
 Frame = +1

Query: 7   EDSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVP 186
           ++++  + +E   +  D  G GS P VV+Y  +I+G+ K G   +A     EM  +G++P
Sbjct: 170 DENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILP 229

Query: 187 DVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFY 366
           DV TY +++   C    +D A+ +   M + G  P+ + Y +++ G    G+ +EA  F 
Sbjct: 230 DVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFL 289

Query: 367 DNMLAAGLTPDDTLYSMLVGSL 432
             M + G+ PD   YS+L+  L
Sbjct: 290 KKMRSDGVEPDVVTYSLLMDYL 311



 Score = 83.6 bits (205), Expect = 4e-16
 Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 35/172 (20%)
 Frame = +1

Query: 13  SKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDV 192
           +K+G + +A  +F  M  +G  P+ VTY  +I    KSG + +A  + ++M  +GL P  
Sbjct: 382 AKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441

Query: 193 YTYAALVHG-----------------------------------HCVNGKVDVALRLFEE 267
             Y +L+HG                                   HC  G+V  + +LFE 
Sbjct: 442 IVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFEL 501

Query: 268 MKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLV 423
           M + G KPNV+ Y  LI+G    G+ +EA +    M++ GL P+   YS L+
Sbjct: 502 MVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 553



 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 41/145 (28%), Positives = 73/145 (50%)
 Frame = +1

Query: 22  GDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTY 201
           G M EA +L   M   G +P+ VTY+ +I+GY K   + +A    KEME  G+ PD+ TY
Sbjct: 525 GKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITY 584

Query: 202 AALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLA 381
             ++ G     +   A  L+  + + G +  +  Y  ++ GL K   +++A Q + N+  
Sbjct: 585 NIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCL 644

Query: 382 AGLTPDDTLYSMLVGSLHTDKRKDE 456
             L  +   +++++ +L    R DE
Sbjct: 645 MDLKLEARTFNIMIDALLKVGRNDE 669



 Score = 70.5 bits (171), Expect = 4e-12
 Identities = 36/135 (26%), Positives = 68/135 (50%)
 Frame = +1

Query: 28  MVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAA 207
           M +A  LF++ME  G  P ++TYN+++ G  ++     A+     + + G   ++ TY  
Sbjct: 562 MEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNI 621

Query: 208 LVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAG 387
           ++HG C N   D AL++F+ +     K     +  +I  L K GR++EA   +    + G
Sbjct: 622 ILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNG 681

Query: 388 LTPDDTLYSMLVGSL 432
           L P+   Y ++  ++
Sbjct: 682 LVPNYWTYRLMAENI 696



 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 39/137 (28%), Positives = 68/137 (49%)
 Frame = +1

Query: 19  EGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYT 198
           +G +VE   L   M   G  P    ++++I  Y K G + +A     +M ++GL P+  T
Sbjct: 349 KGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVT 408

Query: 199 YAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNML 378
           Y A++   C +G+V+ A+  FE+M   G  P  + Y +LI GL    + E A +    ML
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468

Query: 379 AAGLTPDDTLYSMLVGS 429
             G+  +   ++ ++ S
Sbjct: 469 DRGICLNTIFFNSIIDS 485



 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
 Frame = +1

Query: 67  KGSRPSVVTYNVMIDGYIKSGSIREA-ERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVD 243
           KG R   + +  ++ G        +A +   + M + G +P+V++Y  L+ G C   +  
Sbjct: 116 KGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQ 175

Query: 244 VALRLFEEM---KQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYS 414
            AL L   M   +  G+ P+VV+YT +I+G  KEG S++A+  Y  ML  G+ PD   Y+
Sbjct: 176 EALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYN 235

Query: 415 MLVGSL 432
            ++ +L
Sbjct: 236 SIIAAL 241



 Score = 65.9 bits (159), Expect = 9e-11
 Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 4/154 (2%)
 Frame = +1

Query: 10  DSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKK---GL 180
           D +  D ++   + R M   G  P+V +YN+++ G       +EA      M      G 
Sbjct: 135 DKRTSDAMDI--VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGS 192

Query: 181 VPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQ 360
            PDV +Y  +++G    G  D A   + EM  RG  P+VV Y ++I+ L K    ++A +
Sbjct: 193 PPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAME 252

Query: 361 FYDNMLAAGLTPDDTLY-SMLVGSLHTDKRKDEI 459
             + M+  G+ PD   Y S+L G   + + K+ I
Sbjct: 253 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAI 286



 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 4/145 (2%)
 Frame = +1

Query: 34  EARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKG---LVPDVYTYA 204
           +AR +F ++  +G   S+   N  +    +        R+ + M + G   + PD+ TY 
Sbjct: 33  DARHVFDELLRRGRGASIYGLNRALADVARDSPAAAVSRYNR-MARAGADEVTPDLCTYG 91

Query: 205 ALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQF-YDNMLA 381
            L+   C  G++D+       + ++G + + +A+T L+ GL  + R+ +A       M  
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 382 AGLTPDDTLYSMLVGSLHTDKRKDE 456
            G  P+   Y++L+  L  + R  E
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQE 176



 Score = 38.9 bits (89), Expect = 0.012
 Identities = 25/107 (23%), Positives = 47/107 (43%)
 Frame = +1

Query: 34  EARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALV 213
           +A ++F+++     +    T+N+MID  +K G   EA+         GLVP+ +TY  + 
Sbjct: 634 DALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMA 693

Query: 214 HGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEA 354
                 G ++   +LF  M+  G   +      ++  L + G    A
Sbjct: 694 ENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRA 740

to top

>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915|
          Length = 463

 Score = 79.7 bits (195), Expect = 6e-15
 Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
 Frame = +1

Query: 34  EARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALV 213
           +A  L  D    G  P VVTYN +I GY +   I EA    + M   G+ PDV TY +L+
Sbjct: 31  KAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLI 90

Query: 214 HGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQ-FYDNMLAAGL 390
            G      +D  L LF+EM + G  P++ +Y  L+    K G+ EEAF+  Y ++  AGL
Sbjct: 91  AGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGL 150

Query: 391 TPDDTLYSMLVGSL 432
            P    Y++L+ +L
Sbjct: 151 NPGPDTYNVLLDAL 164



 Score = 79.3 bits (194), Expect = 8e-15
 Identities = 44/148 (29%), Positives = 80/148 (54%)
 Frame = +1

Query: 16  KEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVY 195
           K G +  A  LF++M+ +  +P ++TYN++I+G  KS  +  A+    E++K G  P+  
Sbjct: 166 KCGYIDNALELFKEMQSR-FKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAV 224

Query: 196 TYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNM 375
           TY  ++  +    ++   L+LF EMK+ G   +  AY A++S L K GR++EA+++   +
Sbjct: 225 TYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQEL 284

Query: 376 LAAGLTPDDTLYSMLVGSLHTDKRKDEI 459
           +  G   D   Y+ L+     D   D +
Sbjct: 285 VRKGRRHDIVSYNTLLNLYFKDGNLDAV 312



 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 45/139 (32%), Positives = 67/139 (48%)
 Frame = +1

Query: 40  RRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHG 219
           R L++D++  G  P   TYNV++D   K G I  A    KEM+ +   P++ TY  L++G
Sbjct: 139 RVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALELFKEMQSR-FKPELMTYNILING 197

Query: 220 HCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPD 399
            C + +V  A  +  E+K+ G  PN V YT ++    K  R     Q +  M   G T D
Sbjct: 198 LCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYD 257

Query: 400 DTLYSMLVGSLHTDKRKDE 456
              Y  +V +L    R  E
Sbjct: 258 GYAYFAVVSALIKTGRTKE 276



 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 41/144 (28%), Positives = 73/144 (50%)
 Frame = +1

Query: 16  KEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVY 195
           K G   EA    +++  KG R  +V+YN +++ Y K G++   +    E+E++G+  D Y
Sbjct: 270 KTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERRGMKADEY 329

Query: 196 TYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNM 375
           T+  +V+G    G+   A   F  M + G   N+V    L+ GL K G  + A +++++M
Sbjct: 330 THTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYFESM 389

Query: 376 LAAGLTPDDTLYSMLVGSLHTDKR 447
                  D+  Y+ +V +L  D R
Sbjct: 390 ----EVKDEYTYTSVVHNLCKDMR 409



 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 32/109 (29%), Positives = 55/109 (50%)
 Frame = +1

Query: 97  NVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQ 276
           N+ +D   K   + +AE    +  + G+ PDV TY  L+ G+C    ++ A  +   M+ 
Sbjct: 17  NICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRD 76

Query: 277 RGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLV 423
            G +P+V  Y +LI+G A+    +     +D ML  G+ PD   Y+ L+
Sbjct: 77  AGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLM 125



 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 31/132 (23%), Positives = 65/132 (49%)
 Frame = +1

Query: 37  ARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVH 216
           A+ +  +++  G  P+ VTY  ++  Y K+  IR   +   EM+++G   D Y Y A+V 
Sbjct: 207 AKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVS 266

Query: 217 GHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTP 396
                G+   A    +E+ ++G + ++V+Y  L++   K+G  +        +   G+  
Sbjct: 267 ALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERRGMKA 326

Query: 397 DDTLYSMLVGSL 432
           D+  ++++V  L
Sbjct: 327 DEYTHTIIVNGL 338



 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 35/138 (25%), Positives = 72/138 (52%), Gaps = 4/138 (2%)
 Frame = +1

Query: 43  RLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGH 222
           +LF +M+ +G       Y  ++   IK+G  +EA  + +E+ +KG   D+ +Y  L++ +
Sbjct: 244 QLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLY 303

Query: 223 CVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDD 402
             +G +D    L  E+++RG K +   +T +++GL + G++  A + + +M   G+  + 
Sbjct: 304 FKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNL 363

Query: 403 TLYSMLVGSL----HTDK 444
              + LV  L    H D+
Sbjct: 364 VTCNCLVDGLCKAGHVDR 381



 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 36/113 (31%), Positives = 53/113 (46%)
 Frame = +1

Query: 16  KEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVY 195
           + G    A   F  M   G   ++VT N ++DG  K+G +  A R+ + ME K    D Y
Sbjct: 340 RTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYFESMEVK----DEY 395

Query: 196 TYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEA 354
           TY ++VH  C + +   A +L      +G K    A  A++SGL   G   EA
Sbjct: 396 TYTSVVHNLCKDMRFVCASKLLLSCYNKGIKIPTSARRAVLSGLRMSGCYGEA 448

to top

>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I|
          Length = 1261

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
 Frame = +1

Query: 37   ARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSI----REAERFKKEMEKKGLVPDVYTYA 204
            ++ L+R +  K    +     +++D  I S S     + +  F   M+  G +P   T+A
Sbjct: 833  SKHLYRKISTKSLEKANWFMALILDAMILSSSFARQFKSSNLFCDNMKMLGYIPRASTFA 892

Query: 205  ALVHGHCVNGKVD---VALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNM 375
             L++     G  D    AL +FEE K+   KP+V  Y A++S L +  R+ E ++ +  M
Sbjct: 893  HLINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEM 952

Query: 376  LAAGLTPDDTLYSMLVGS 429
              +GL P    Y  ++ +
Sbjct: 953  KESGLLPTSVTYGTVINA 970



 Score = 59.3 bits (142), Expect = 8e-09
 Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 2/142 (1%)
 Frame = +1

Query: 25   DMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYA 204
            D   A  +F + +    +PSV  YN ++    ++    E  +  +EM++ GL+P   TY 
Sbjct: 906  DATTALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYG 965

Query: 205  ALVHGHCVNGKVDVALRLFEEMK-QRGAKPNVVAYTALIS-GLAKEGRSEEAFQFYDNML 378
             +++  C  G   +A +LF EM+ Q   +P V  Y  +I   +      E+A  +Y+ + 
Sbjct: 966  TVINAACRIGDESLAEKLFAEMENQPNYQPRVAPYNTMIQFEVQTMFNREKALFYYNRLC 1025

Query: 379  AAGLTPDDTLYSMLVGSLHTDK 444
            A  + P    Y +L+ +  T K
Sbjct: 1026 ATDIEPSSHTYKLLMDAYGTLK 1047



 Score = 29.3 bits (64), Expect = 9.4
 Identities = 14/69 (20%), Positives = 30/69 (43%)
 Frame = +1

Query: 187  DVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFY 366
            D   + + +     N ++   +++  +MK+     N     ALI G  K G   +A  ++
Sbjct: 1109 DANLFQSQIESLIANDRIVEGIQIVSDMKRYNVSLNAYIVNALIKGFTKVGMISKARYYF 1168

Query: 367  DNMLAAGLT 393
            D +   G++
Sbjct: 1169 DLLECEGMS 1177

to top

>PTCD1_MOUSE (Q8C2E4) Pentatricopeptide repeat protein 1|
          Length = 695

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 35/140 (25%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
 Frame = +1

Query: 22  GDMVEARRLFRDMEGKGSRPSVVTY----NVMIDGYIKSGSIREAERFKKEMEKKGLVPD 189
           G + +A RLF DM+ +   PS  TY    NV  +   K  +++ A + +++++ +    +
Sbjct: 185 GYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLRQQLQARNFQLN 244

Query: 190 VYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRS--EEAFQF 363
           + TY AL+        + + L +F+E+ QRG       +  L+ G  ++ ++   +A Q 
Sbjct: 245 LKTYHALLKVAAKCADLRLCLDVFKEIIQRGHAVTEETFCFLLVGCIQDKKTGFRQAMQV 304

Query: 364 YDNMLAAGLTPDDTLYSMLV 423
           +  ML+ G+ P    Y++L+
Sbjct: 305 WRQMLSLGIKPSRHGYNLLL 324



 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
 Frame = +1

Query: 67  KGSRPSVVTYNVMIDGYIKSGSIREA-ERFKKEMEKKG-LVPDVYTYAALVHGHCVNGKV 240
           +G R +   Y       IK G + EA + F+++M K+  L P    Y  L+ G    G +
Sbjct: 128 RGRRNTQYWYFFQCKRLIKEGKLAEALDLFERQMLKEERLQPLECNYTVLIGGCGRVGYL 187

Query: 241 DVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQ 360
             A RLF +MK+R  +P+   YTAL +  A+    + A Q
Sbjct: 188 KKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQ 227



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +1

Query: 232 GKVDVALRLFEE--MKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDT 405
           GK+  AL LFE   +K+   +P    YT LI G  + G  ++AF+ +++M    L P D 
Sbjct: 148 GKLAEALDLFERQMLKEERLQPLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDA 207

Query: 406 LYSML 420
            Y+ L
Sbjct: 208 TYTAL 212



 Score = 37.7 bits (86), Expect = 0.026
 Identities = 24/84 (28%), Positives = 42/84 (50%)
 Frame = +1

Query: 85  VVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFE 264
           V  +N +I    K G +  A+     + KKG+VP++ T+  L  G C   +    ++L  
Sbjct: 518 VTFFNTLIRKKSKLGDLEGAKALLPILAKKGIVPNLRTFCNLAIG-CHRPR--DGMQLLA 574

Query: 265 EMKQRGAKPNVVAYTALISGLAKE 336
           +MK+    PN+  Y+ LI+   K+
Sbjct: 575 DMKKSQVSPNIHIYSTLINAALKK 598

to top

>LPPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)|
           (Leucine-rich PPR motif-containing protein)
          Length = 1273

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 29/94 (30%), Positives = 45/94 (47%)
 Frame = +1

Query: 58  MEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGK 237
           ME    +P+ VTY  +I  Y   G I  A +    M+ K L      ++ALV GH   G 
Sbjct: 67  MEEANIQPNRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGD 126

Query: 238 VDVALRLFEEMKQRGAKPNVVAYTALISGLAKEG 339
           ++ A  +   M+  G +P    Y AL++  A++G
Sbjct: 127 MENAENILTVMRDAGIEPGPDTYLALLNAYAEKG 160



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
 Frame = +1

Query: 94  YNVMIDGYIKSGSIREAERFKKEMEK--KGLVPDVYTYAALVHGHCVNGKVDVALRLFEE 267
           Y  +I+   +   + +A   K+E ++     V D   Y  LV     +GK+  A+++ +E
Sbjct: 593 YAALINLCCRHDKVEDALNLKEEFDRLDSSAVLDTGNYLGLVRVLAKHGKLQDAIKILKE 652

Query: 268 MKQRGA---KPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSLHT 438
           MK++         +++  +++G A  G  E   Q ++ ++  GL    T  S  + ++H 
Sbjct: 653 MKEKDVLIKDTTALSFFHMLNGAALRGEIETVKQLHEAIVTLGLAEPSTNISFPLVTVHL 712

Query: 439 DK 444
           +K
Sbjct: 713 EK 714

to top

>PTCD1_PONPY (Q5R655) Pentatricopeptide repeat protein 1|
          Length = 698

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +1

Query: 232 GKVDVALRLFEE--MKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDT 405
           GK+  AL LFE   +K+   +P    YTALI G  + G  ++AF  Y+ M    L P D 
Sbjct: 148 GKLVEALDLFERQMLKEERLQPMESNYTALIGGCGRVGYLKKAFSLYNQMKKRDLEPSDA 207

Query: 406 LYSML 420
            Y+ L
Sbjct: 208 TYTAL 212



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
 Frame = +1

Query: 67  KGSRPSVVTYNVMIDGYIKSGSIREA-ERFKKEMEKKG-LVPDVYTYAALVHGHCVNGKV 240
           +G R +   Y +     IK G + EA + F+++M K+  L P    Y AL+ G    G +
Sbjct: 128 RGQRNTPYWYFLQCKRLIKEGKLVEALDLFERQMLKEERLQPMESNYTALIGGCGRVGYL 187

Query: 241 DVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQ 360
             A  L+ +MK+R  +P+   YTAL +  A+    + A Q
Sbjct: 188 KKAFSLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQ 227



 Score = 37.4 bits (85), Expect = 0.034
 Identities = 24/81 (29%), Positives = 41/81 (50%)
 Frame = +1

Query: 94  YNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMK 273
           +N ++    K G +  A+     + K+GLVP++ T+  L  G C   K    L+L  +MK
Sbjct: 521 FNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIG-CHRPK--DGLQLLTDMK 577

Query: 274 QRGAKPNVVAYTALISGLAKE 336
           +    PN   Y+ALI+   ++
Sbjct: 578 KSQVTPNSHIYSALINAAVRK 598



 Score = 31.2 bits (69), Expect = 2.5
 Identities = 26/118 (22%), Positives = 55/118 (46%)
 Frame = +1

Query: 76  RPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALR 255
           +P + T  ++ +  ++SGS  E+      +++  +  D+  +  LV      G ++ A  
Sbjct: 482 QPDIRTLTLLAE-VVESGSPAESLLLAL-LDEHQVEADLTFFNTLVRKKSKLGDLEGAKA 539

Query: 256 LFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGS 429
           L   + +RG  PN+  +  L  G     R ++  Q   +M  + +TP+  +YS L+ +
Sbjct: 540 LLPVLAKRGLVPNLQTFCNLAIGCH---RPKDGLQLLTDMKKSQVTPNSHIYSALINA 594



 Score = 30.4 bits (67), Expect = 4.2
 Identities = 22/101 (21%), Positives = 46/101 (45%)
 Frame = +1

Query: 13  SKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDV 192
           SK GD+  A+ L   +  +G  P++ T+  +  G  +    ++  +   +M+K  + P+ 
Sbjct: 529 SKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGCHRP---KDGLQLLTDMKKSQVTPNS 585

Query: 193 YTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTAL 315
           + Y+AL++           + + ++MKQ     N V    L
Sbjct: 586 HIYSALINAAVRKLNYTYLINILKDMKQNRVPVNEVVIRQL 626

to top

>PTCD1_HUMAN (O75127) Pentatricopeptide repeat protein 1|
          Length = 700

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
 Frame = +1

Query: 130 SIREAERFKKEMEK-----KGLVPDVYTYAALVHGHCVNGKVDVALRLFEE--MKQRGAK 288
           ++R  ER  ++ME      +G     Y Y          GK+  AL LFE   +K+   +
Sbjct: 111 NLRFGERRDEQMEPEPKLWRGRRNTPYWYFLQCKHLIKEGKLVEALDLFERQMLKEERLQ 170

Query: 289 PNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSML 420
           P    YT LI G  + G  ++AF  Y+ M    L P D  Y+ L
Sbjct: 171 PMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTAL 214



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
 Frame = +1

Query: 67  KGSRPSVVTYNVMIDGYIKSGSIREA-ERFKKEMEKKG-LVPDVYTYAALVHGHCVNGKV 240
           +G R +   Y +     IK G + EA + F+++M K+  L P    Y  L+ G    G +
Sbjct: 130 RGRRNTPYWYFLQCKHLIKEGKLVEALDLFERQMLKEERLQPMESNYTVLIGGCGRVGYL 189

Query: 241 DVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQ 360
             A  L+ +MK+R  +P+   YTAL +  A+    + A Q
Sbjct: 190 KKAFNLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQ 229



 Score = 37.7 bits (86), Expect = 0.026
 Identities = 24/81 (29%), Positives = 41/81 (50%)
 Frame = +1

Query: 94  YNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMK 273
           +N ++    K G +  A+     + K+GLVP++ T+  L  G C   K    L+L  +MK
Sbjct: 523 FNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIG-CHRPK--DGLQLLTDMK 579

Query: 274 QRGAKPNVVAYTALISGLAKE 336
           +    PN   Y+ALI+   ++
Sbjct: 580 KSQVTPNTHIYSALINAAIRK 600



 Score = 30.8 bits (68), Expect = 3.2
 Identities = 22/101 (21%), Positives = 46/101 (45%)
 Frame = +1

Query: 13  SKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDV 192
           SK GD+  A+ L   +  +G  P++ T+  +  G  +    ++  +   +M+K  + P+ 
Sbjct: 531 SKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGCHRP---KDGLQLLTDMKKSQVTPNT 587

Query: 193 YTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTAL 315
           + Y+AL++           + + ++MKQ     N V    L
Sbjct: 588 HIYSALINAAIRKLNYTYLISILKDMKQNRVPVNEVVIRQL 628



 Score = 30.8 bits (68), Expect = 3.2
 Identities = 26/118 (22%), Positives = 55/118 (46%)
 Frame = +1

Query: 76  RPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALR 255
           +P + T  ++ +  ++SGS  E+      +++  +  D+  +  LV      G ++ A  
Sbjct: 484 QPDIRTLTLLAE-VVESGSPAESLLLAL-LDEHQVEADLTFFNTLVRKKSKLGDLEGAKA 541

Query: 256 LFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGS 429
           L   + +RG  PN+  +  L  G     R ++  Q   +M  + +TP+  +YS L+ +
Sbjct: 542 LLPVLAKRGLVPNLQTFCNLAIGCH---RPKDGLQLLTDMKKSQVTPNTHIYSALINA 596

to top

>RPOM_MOUSE (Q8BKF1) DNA-directed RNA polymerase, mitochondrial precursor (EC|
           2.7.7.6) (MtRPOL)
          Length = 1207

 Score = 36.2 bits (82), Expect = 0.077
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
 Frame = +1

Query: 22  GDMVEARRLFRDMEGKGSRPSVVT---YNVMIDGYIKSGSIREAERFKKEMEKKGLVPDV 192
           G +  A  +       G R  V+T   YN ++ G+ + GS RE       ++  GL PD+
Sbjct: 209 GQVPLAHHVLVTHHNNGDRQQVLTLHMYNTVMLGWARKGSFRELVYVFLMLKDAGLSPDL 268

Query: 193 YTYAALVHGHCVNGK---VDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRS 345
            +YAA +   C+  +   V    R  ++M + G +P ++ +T L+  L +E R+
Sbjct: 269 CSYAAAL--QCMGRRDQDVRTIQRCLKQMMEEGFQPQLL-FTDLV--LEEEDRA 317

to top

>PT309_YEAST (P32522) Protein PET309, mitochondrial precursor|
          Length = 965

 Score = 36.2 bits (82), Expect = 0.077
 Identities = 17/90 (18%), Positives = 39/90 (43%)
 Frame = +1

Query: 49  FRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCV 228
           F  + G G  PS+  Y +++    + G +    +   ++ ++G++P      +L++ H  
Sbjct: 334 FNALFGIGKLPSIQHYGILMYTMARIGELDSVNKLYTQLLRRGMIPTYAVLQSLLYAHYK 393

Query: 229 NGKVDVALRLFEEMKQRGAKPNVVAYTALI 318
            G        FE  K+    P+   +T ++
Sbjct: 394 VGDFAACFSHFELFKKYDITPSTATHTIML 423



 Score = 31.2 bits (69), Expect = 2.5
 Identities = 16/83 (19%), Positives = 37/83 (44%)
 Frame = +1

Query: 175 GLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEA 354
           G +P +  Y  L++     G++D   +L+ ++ +RG  P      +L+    K G     
Sbjct: 341 GKLPSIQHYGILMYTMARIGELDSVNKLYTQLLRRGMIPTYAVLQSLLYAHYKVGDFAAC 400

Query: 355 FQFYDNMLAAGLTPDDTLYSMLV 423
           F  ++      +TP    +++++
Sbjct: 401 FSHFELFKKYDITPSTATHTIML 423

to top

>AEP3_KLULA (Q6CIF3) ATPase expression protein 3|
          Length = 593

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
 Frame = +1

Query: 19  EGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSI-------REAERFKKEMEKKG 177
           + +    R L+  M+ +G  P+V TYN+M+   +++  +       REA  + + M+K+ 
Sbjct: 226 KNNFATCRELYAQMKSEGIAPNVQTYNLMLRNLLRNSRLIKQQLPYREAIFYLERMKKEN 285

Query: 178 LVPDVYTY 201
           +  DV T+
Sbjct: 286 ISADVITW 293

to top

>RIR2_NEUCR (Q9C167) Ribonucleoside-diphosphate reductase small chain (EC|
           1.17.4.1) (Ribonucleotide reductase small subunit)
          Length = 410

 Score = 33.5 bits (75), Expect = 0.50
 Identities = 35/117 (29%), Positives = 48/117 (41%)
 Frame = +1

Query: 91  TYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEM 270
           TY+++ID YIK  S R                  Y + A+    C+  K D ALR   + 
Sbjct: 183 TYSLLIDTYIKEPSQR-----------------TYLFNAIDTIPCIRKKADWALRWITDK 225

Query: 271 KQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSLHTD 441
               A+  +VA+ A + G+   G     F      L  GLT  + L S   G LHTD
Sbjct: 226 SSTFAQ-RLVAFAA-VEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEG-LHTD 279

to top

>CLPC_ODOSI (P49574) ATP-dependent Clp protease ATP-binding subunit clpA|
           homolog
          Length = 885

 Score = 33.1 bits (74), Expect = 0.65
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
 Frame = +1

Query: 133 IREAERFKKEMEKKG-LVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQ------RGAKP 291
           + +AE+F  E EKKG   P +  Y+  +    V+GK+D  +   +E+ +      R  K 
Sbjct: 153 LTQAEKFLLEREKKGSSTPTLDEYSENISKEAVDGKLDPVIGRDKEIHEVIKVLARRRKN 212

Query: 292 NV-------VAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSLHTDKRK 450
           N        V  TA+  GLA+   +E+A  F D  L   L     L S+L G+ +  + +
Sbjct: 213 NPVLIGEPGVGKTAVAEGLAQLIIAEKAPDFLDGNLLMAL----DLGSILAGTKYRGEFE 268

Query: 451 DEI 459
           + I
Sbjct: 269 ERI 271

to top

>RT27_HUMAN (Q92552) Mitochondrial 28S ribosomal protein S27 (S27mt) (MRP-S27)|
          Length = 414

 Score = 33.1 bits (74), Expect = 0.65
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
 Frame = +1

Query: 70  GSRPSVVTYNVMIDGYIKSGSIREAER--FKKEMEKKGLVPDVYTYAALVHGHCVNGKVD 243
           G  P   T+N+++D +IK  + ++A    F+  M++   VP     +  V  HC+  K D
Sbjct: 136 GIFPDNFTFNLLMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQLLSLYVLFHCLAKKTD 195

Query: 244 VALRLFEEMKQRGA--------KPNVVAYTALISGLAKEGRSE 348
            +   +EE +  GA        + N V +++ + G A  G+ E
Sbjct: 196 FS---WEEERNFGASLLLPGLKQKNSVGFSSQLYGYALLGKVE 235

to top

>EF2_METKA (Q8TXJ4) Elongation factor 2 (EF-2) [Contains: Mka fusA intein]|
          Length = 1257

 Score = 32.7 bits (73), Expect = 0.85
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
 Frame = +1

Query: 142 AERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVAL---------RLFEEMKQRGAKPN 294
           AE+ +K M + G + ++   A + HG CV  +  + L          LFEE+K+RG    
Sbjct: 8   AEKCRKLMTEPGKIRNIGIIAHIDHGKCVAPETKICLADGRFVRADELFEELKERGR--- 64

Query: 295 VVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPD 399
                     L K   SEE ++  + +  + L  D
Sbjct: 65  ----------LVKCDESEEVYELREPVGVSSLDKD 89

to top

>RPOM_HUMAN (O00411) DNA-directed RNA polymerase, mitochondrial precursor (EC|
           2.7.7.6) (MtRPOL)
          Length = 1230

 Score = 32.7 bits (73), Expect = 0.85
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
 Frame = +1

Query: 94  YNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVD----VALRLF 261
           YN ++ G+ + G+ +E       ++  GL PD+ +YAA +   C+ G+ D       R  
Sbjct: 264 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL--QCM-GRQDQDAGTIERCL 320

Query: 262 EEMKQRGAKPNVVAYTALIS 321
           E+M Q G K   +    L+S
Sbjct: 321 EQMSQEGLKLQALFTAVLLS 340

to top

>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c|
           precursor
          Length = 943

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 1/128 (0%)
 Frame = -1

Query: 401 SSGVNPAANILS*NWKASSDLPSFARPDIRAVYATTLGLAPLCFISSNNRSATSTFPLTQ 222
           S+   P +++ S N   ++   S     + +  AT+    PL  ++S   ++ S+ PLT 
Sbjct: 318 SASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTS 377

Query: 221 CP*TSAA*VYTSGTSPFFSI-SFLNRSASRMLPLLMYPSIMTL*VTTLGLDPLPSISRNN 45
              TSA    ++ ++P  S  S  + S S   P   Y +   L  +++   PL S +   
Sbjct: 378 VNSTSAT---SASSTPLTSANSTTSTSVSSTAP--SYNTSSVLPTSSVSSTPLSSANSTT 432

Query: 44  LLASTMSP 21
             +++ +P
Sbjct: 433 ATSASSTP 440

to top

>RIR2_RAT (Q4KLN6) Ribonucleoside-diphosphate reductase M2 subunit (EC|
           1.17.4.1) (Ribonucleotide reductase small subunit)
           (Ribonucleotide reductase small chain)
          Length = 390

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 35/116 (30%), Positives = 46/116 (39%)
 Frame = +1

Query: 94  YNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMK 273
           Y+++ID YIK    RE                 Y + A+    CV  K D ALR   + K
Sbjct: 177 YSLLIDTYIKDSKERE-----------------YLFNAIETMPCVKKKADWALRWIGD-K 218

Query: 274 QRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSLHTD 441
           +      VVA+ A + G+   G     F      L  GLT  + L S   G LH D
Sbjct: 219 EATYGERVVAFAA-VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEG-LHCD 272

to top

>POLB_MAIZE (P15718) Putative Pol polyprotein from transposon element Bs1 (ORF|
           1)
          Length = 740

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
 Frame = +1

Query: 34  EARRLFRDMEGKGSR-PSV--------VTYNVMIDGYIKSGSIREAERFKKEMEKKGLVP 186
           +A ++F  M  KG   PSV        V +N+++      G   +A    +EM+  G  P
Sbjct: 444 DAAKVFDKMLTKGEEAPSVQRGVVMTAVAHNLLVQALFMDGRASDAYVVLEEMQNNGPFP 503

Query: 187 DVYTYAALV 213
           DV+TY   V
Sbjct: 504 DVFTYTLKV 512



 Score = 31.6 bits (70), Expect = 1.9
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
 Frame = +1

Query: 238 VDVALRLFEEMK---------QRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGL 390
           V+ A ++F++M          QRG     VA+  L+  L  +GR+ +A+   + M   G 
Sbjct: 442 VEDAAKVFDKMLTKGEEAPSVQRGVVMTAVAHNLLVQALFMDGRASDAYVVLEEMQNNGP 501

Query: 391 TPDDTLYSMLV 423
            PD   Y++ V
Sbjct: 502 FPDVFTYTLKV 512

to top

>TFC4_YEAST (P33339) Transcription factor tau 131 kDa subunit (TFIIIC 131 kDa|
           subunit)
          Length = 1025

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
 Frame = +1

Query: 130 SIREAERFKKEMEKKG--------------LVPDVYTYAALVHGHCVNGKVDVALRLFEE 267
           +IREA  FK + +KK               L P+V    +  +   V   + VA RLF E
Sbjct: 94  AIREASNFKVKKKKKNDKGKSYGRQRKERVLDPEVAQLLSQANEAFVRNDLQVAERLFNE 153

Query: 268 MKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSLHTD 441
           + ++ A+ N  AY  L      +GR  +    +   LAA L   D  +  +V  L  D
Sbjct: 154 VIKKDAR-NFAAYETLGDIYQLQGRLNDCCNSW--FLAAHLNASDWEFWKIVAILSAD 208

to top

>RIR2_MESAU (Q60561) Ribonucleoside-diphosphate reductase M2 subunit (EC|
           1.17.4.1) (Ribonucleotide reductase small subunit)
           (Ribonucleotide reductase small chain)
          Length = 386

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 35/116 (30%), Positives = 46/116 (39%)
 Frame = +1

Query: 94  YNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMK 273
           Y+++ID YIK    RE                 Y + A+    CV  K D ALR   + K
Sbjct: 177 YSLLIDTYIKDSKERE-----------------YLFNAIETMPCVKKKADWALRWIGD-K 218

Query: 274 QRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSLHTD 441
           +      VVA+ A + G+   G     F      L  GLT  + L S   G LH D
Sbjct: 219 EATYGERVVAFAA-VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEG-LHCD 272

to top

>LEU2_SHIDS (Q32K22) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 466

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 241 DVALRLFEEMKQRGAKPNVVAYTA-LISGLAKEGRSEEAFQFYDNMLAAGLT-PDDTLYS 414
           D+ L +  +    G   +VV +    I  L+ EGR        +    AGL  PD+T ++
Sbjct: 182 DIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTFN 241

Query: 415 MLVGSLHTDKRKD 453
            + G LH  K KD
Sbjct: 242 YVKGRLHAPKGKD 254

to top

>LEU2_SHIBS (Q326G3) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 466

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 241 DVALRLFEEMKQRGAKPNVVAYTA-LISGLAKEGRSEEAFQFYDNMLAAGLT-PDDTLYS 414
           D+ L +  +    G   +VV +    I  L+ EGR        +    AGL  PD+T ++
Sbjct: 182 DIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTFN 241

Query: 415 MLVGSLHTDKRKD 453
            + G LH  K KD
Sbjct: 242 YVKGRLHAPKGKD 254

to top

>LEU2_ECOLI (P0A6A6) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 465

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 241 DVALRLFEEMKQRGAKPNVVAYTA-LISGLAKEGRSEEAFQFYDNMLAAGLT-PDDTLYS 414
           D+ L +  +    G   +VV +    I  L+ EGR        +    AGL  PD+T ++
Sbjct: 181 DIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTFN 240

Query: 415 MLVGSLHTDKRKD 453
            + G LH  K KD
Sbjct: 241 YVKGRLHAPKGKD 253

to top

>LEU2_ECOL6 (P0A6A7) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 465

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 241 DVALRLFEEMKQRGAKPNVVAYTA-LISGLAKEGRSEEAFQFYDNMLAAGLT-PDDTLYS 414
           D+ L +  +    G   +VV +    I  L+ EGR        +    AGL  PD+T ++
Sbjct: 181 DIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTFN 240

Query: 415 MLVGSLHTDKRKD 453
            + G LH  K KD
Sbjct: 241 YVKGRLHAPKGKD 253

to top

>LEU2_ECO57 (Q8XA00) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 465

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 241 DVALRLFEEMKQRGAKPNVVAYTA-LISGLAKEGRSEEAFQFYDNMLAAGLT-PDDTLYS 414
           D+ L +  +    G   +VV +    I  L+ EGR        +    AGL  PD+T ++
Sbjct: 181 DIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTFN 240

Query: 415 MLVGSLHTDKRKD 453
            + G LH  K KD
Sbjct: 241 YVKGRLHAPKGKD 253

to top

>CDC27_YEAST (P38042) Anaphase-promoting complex subunit CDC27 (Cell division|
           control protein 27) (Anaphase-promoting complex subunit
           3)
          Length = 758

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +1

Query: 232 GKVDVALRLFEEMKQRGAKP-NVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTL 408
           G+ + AL  FE  K R   P NVV        L K G  E+A Q+Y+  LA  L P  +L
Sbjct: 622 GQYEEALLYFE--KARSINPVNVVLICCCGGSLEKLGYKEKALQYYE--LACHLQPTSSL 677

Query: 409 YSMLVGSL 432
               +G L
Sbjct: 678 SKYKMGQL 685

to top

>IF2_DEHSC (Q3ZXU3) Translation initiation factor IF-2|
          Length = 593

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
 Frame = +1

Query: 76  RPSVVTYNVMIDGYIKSGSIR--EAERFKKEMEKK--GLVPDVYTYAALVHGHCVNGKVD 243
           RP VVT    I G++  G  R  +A R    MEK+  G+   +  Y   + GH +     
Sbjct: 102 RPPVVT----IMGHVDHGKTRLLDAIRSTNVMEKEVGGITQHIGAYQVEIKGHKITFLDT 157

Query: 244 VALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGL 390
                F  M+ RGA+   +    ++   A +G   +  +  D+  AAG+
Sbjct: 158 PGHEAFTAMRARGAQATDI---TILVVAADDGVMPQTLEALDHAKAAGV 203

to top

>LEU21_SALCH (Q57TE8) 3-isopropylmalate dehydratase large subunit 1 (EC|
           4.2.1.33) (Isopropylmalate isomerase 1) (Alpha-IPM
           isomerase 1) (IPMI 1)
          Length = 466

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 241 DVALRLFEEMKQRGAKPNVVAYTA-LISGLAKEGRSEEAFQFYDNMLAAGLT-PDDTLYS 414
           D+ L +  +    G   +VV +    I  L+ EGR        +    AGL  PD+T ++
Sbjct: 182 DIVLAIIGKTGSAGGTGHVVEFCGDAIRALSMEGRMTLCNMAIEMGAKAGLVAPDETTFN 241

Query: 415 MLVGSLHTDKRKD 453
            + G LH  K +D
Sbjct: 242 YVKGRLHAPKGRD 254

to top

>AEP3_CANGA (Q6FKT1) ATPase expression protein 3|
          Length = 623

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
 Frame = +1

Query: 256 LFEEMKQRGAKPNVVAYTALISGLAKE-------GRSEEAFQFYDNMLAAGLTPDDTLYS 414
           LF +MK  G KPN   Y  L+  L K+           E   +  NM   G+  D   ++
Sbjct: 240 LFAQMKVEGCKPNTTTYNILLLNLVKKVHMRKIRSIKNELLFYLRNMQKNGIFCDTVTWN 299

Query: 415 MLVGSLHTDKRKD 453
                L+ +  +D
Sbjct: 300 TCYNFLNDEMSRD 312

to top

>GATE_PYRKO (Q5JI74) Glutamyl-tRNA(Gln) amidotransferase subunit E (EC 6.3.5.-)|
           (Glu-ADT subunit E)
          Length = 629

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 10/47 (21%)
 Frame = +1

Query: 256 LFEEMKQRGAKPNVVA--YTALISGLAKE--------GRSEEAFQFY 366
           LFEE+ ++G KP++ A     ++ GL KE        G   EAFQ Y
Sbjct: 485 LFEELVEKGVKPSLAASILVVVLKGLKKEVPVENITDGHIMEAFQLY 531

to top

>WSC4_YEAST (P38739) Cell wall integrity and stress response component 4|
           precursor
          Length = 605

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 1/131 (0%)
 Frame = -1

Query: 422 TSIEYRVSSGVNPAANILS*NWKASSDLPSFARPDIRAVYATTLGLAPLCFISSNNRSAT 243
           TS     S+ V+  ++  +     SS L S +     +   TT   AP   IS++  S+T
Sbjct: 203 TSTSSSTSTTVSVTSSTSTTTSTTSSTLISTSTSSSSSSTPTTTSSAP---ISTSTTSST 259

Query: 242 STFPLTQCP*TSAA*VYTSGTSPFFSISFLNRSASRMLPLLMYPSIMTL*VTTLGLDPLP 63
           ST   T  P +S+A   +S T+P  S +F   S S        PS  T+  T+    P+ 
Sbjct: 260 STSTSTTSPTSSSAPTSSSNTTP-TSTTFTTTSPSTA------PSSTTVTYTSTTASPIT 312

Query: 62  S-ISRNNLLAS 33
           S I+  NL  S
Sbjct: 313 STITSVNLQTS 323

to top

>LEU2_SALTI (Q8Z9I2) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 465

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 241 DVALRLFEEMKQRGAKPNVVAYTA-LISGLAKEGRSEEAFQFYDNMLAAGLT-PDDTLYS 414
           D+ L +  +    G   +VV +    I  L+ EGR        +    AGL  PD+T ++
Sbjct: 181 DIVLAIIGKTGSAGGTGHVVEFCGDAIRALSMEGRMTLCNMAIEMGAKAGLVAPDETTFN 240

Query: 415 MLVGSLHTDKRKD 453
            + G LH  K +D
Sbjct: 241 YVKGRLHAPKGRD 253

to top

>LEU21_SALTY (P15717) 3-isopropylmalate dehydratase large subunit 1 (EC|
           4.2.1.33) (Isopropylmalate isomerase 1) (Alpha-IPM
           isomerase 1) (IPMI 1)
          Length = 465

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 241 DVALRLFEEMKQRGAKPNVVAYTA-LISGLAKEGRSEEAFQFYDNMLAAGLT-PDDTLYS 414
           D+ L +  +    G   +VV +    I  L+ EGR        +    AGL  PD+T ++
Sbjct: 181 DIVLAIIGKTGSAGGTGHVVEFCGDAIRALSMEGRMTLCNMAIEMGAKAGLVAPDETTFN 240

Query: 415 MLVGSLHTDKRKD 453
            + G LH  K +D
Sbjct: 241 YVKGRLHAPKGRD 253

to top

>NIP7_RAT (Q9WV50) 60S ribosome subunit biogenesis protein NIP7 homolog|
           (PEachy) (KD93)
          Length = 180

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 521 GVATRSRQDC*KADTNTDLVMYQSHVTEY 607
           GVA +S QDC K D    +V +Q+ + EY
Sbjct: 144 GVAAKSTQDCRKVDPMAIVVFHQADIGEY 172

to top

>NIP7_MOUSE (Q9CXK8) 60S ribosome subunit biogenesis protein NIP7 homolog|
           (PEachy) (KD93)
          Length = 180

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 521 GVATRSRQDC*KADTNTDLVMYQSHVTEY 607
           GVA +S QDC K D    +V +Q+ + EY
Sbjct: 144 GVAAKSTQDCRKVDPMAIVVFHQADIGEY 172

to top

>NIP7_HUMAN (Q9Y221) 60S ribosome subunit biogenesis protein NIP7 homolog|
           (KD93)
          Length = 180

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 521 GVATRSRQDC*KADTNTDLVMYQSHVTEY 607
           GVA +S QDC K D    +V +Q+ + EY
Sbjct: 144 GVAAKSTQDCRKVDPMAIVVFHQADIGEY 172

to top

>LEU2_SHISS (Q3Z5T8) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 466

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +1

Query: 241 DVALRLFEEMKQRGAKPNVVAYTA-LISGLAKEGRSEEAFQFYDNMLAAGLT-PDDTLYS 414
           D+ L +  +    G   +VV +    I  L+ EGR        +     GL  PD+T ++
Sbjct: 182 DIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKTGLVAPDETTFN 241

Query: 415 MLVGSLHTDKRKD 453
            + G LH  K KD
Sbjct: 242 YVKGRLHAPKGKD 254

to top

>LPXK_SHISS (Q3Z3K6) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 328

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +1

Query: 124 SGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVA 303
           SG+IR   + K +   +  VP V        G   NGK  V + L E+++QRG +  VV+
Sbjct: 27  SGAIRLCYKLKLKRAWRAPVPVVVVGNLTAGG---NGKTPVVVWLVEQLQQRGIRVGVVS 83

to top

>LPXK_SHIFL (Q83RY7) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 328

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +1

Query: 124 SGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVA 303
           SG+IR   + K +   +  VP V        G   NGK  V + L E+++QRG +  VV+
Sbjct: 27  SGAIRLCYKLKLKRAWRAPVPVVVVGNLTAGG---NGKTPVVVWLVEQLQQRGIRVGVVS 83

to top

>LPXK_SHIDS (Q32E35) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 328

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +1

Query: 124 SGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVA 303
           SG+IR   + K +   +  VP V        G   NGK  V + L E+++QRG +  VV+
Sbjct: 27  SGAIRLCYKLKLKRAWRAPVPVVVVGNLTAGG---NGKTPVVVWLVEQLQQRGIRVGVVS 83

to top

>LPXK_SHIBS (Q31YT5) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 328

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +1

Query: 124 SGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVA 303
           SG+IR   + K +   +  VP V        G   NGK  V + L E+++QRG +  VV+
Sbjct: 27  SGAIRLCYKLKLKRAWRAPVPVVVVGNLTAGG---NGKTPVVVWLVEQLQQRGIRVGVVS 83

to top

>LPXK_ECOLI (P27300) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 328

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +1

Query: 124 SGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVA 303
           SG+IR   + K +   +  VP V        G   NGK  V + L E+++QRG +  VV+
Sbjct: 27  SGAIRLCYKLKLKRAWRAPVPVVVVGNLTAGG---NGKTPVVVWLVEQLQQRGIRVGVVS 83

to top

>LPXK_ECO57 (Q8XDH0) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 328

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +1

Query: 124 SGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVA 303
           SG+IR   + K +   +  VP V        G   NGK  V + L E+++QRG +  VV+
Sbjct: 27  SGAIRLCYKLKLKRAWRAPVPVVVVGNLTAGG---NGKTPVVVWLVEQLQQRGIRVGVVS 83

to top

>RIR2_BRARE (P79733) Ribonucleoside-diphosphate reductase M2 subunit (EC|
           1.17.4.1) (Ribonucleotide reductase small subunit)
           (Ribonucleotide reductase small chain) (Ribonucleotide
           reductase protein R2 class I)
          Length = 386

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 33/116 (28%), Positives = 45/116 (38%)
 Frame = +1

Query: 94  YNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMK 273
           Y+++ID YIK    RE                 + + A+    CV  K D AL    +  
Sbjct: 173 YSLLIDTYIKDSKERE-----------------FLFNAIETMPCVKKKADWALNWIGDKN 215

Query: 274 QRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSLHTD 441
            R  +  VVA+ A + G+   G     F      L  GLT  + L S   G LH D
Sbjct: 216 ARYGE-RVVAFAA-VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEG-LHCD 268

to top

>YQKF_BACSU (P54569) Hypothetical oxidoreductase yqkF (EC 1.-.-.-)|
          Length = 306

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
 Frame = +1

Query: 142 AERFKKEMEKKGLVPDVYTYAAL--VHGHCVNGKVDVALRLFEEMKQRGA---------K 288
           ++ + KE  KK L      Y  L  +HG  +   +D  +  FEE+KQ G          +
Sbjct: 93  SKAYIKEAVKKSLTRLKTDYIDLYQLHGGTIEDNIDETIEAFEELKQEGVIRYYGISSIR 152

Query: 289 PNVV 300
           PNV+
Sbjct: 153 PNVI 156

to top

>TRPB_HELPY (P56142) Tryptophan synthase beta chain (EC 4.2.1.20)|
          Length = 393

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
 Frame = +1

Query: 19  EGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREA-ERFKKEMEKKGLVPDVY 195
           EG + E+  +   ++  G  P             +S S  EA E FK   +K+G++P + 
Sbjct: 289 EGQIAESHSISAGLDYPGVGPEHSYLKESGRAVYESASDAEALEAFKLLCQKEGIIPALE 348

Query: 196 TYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGL 327
           +  AL +   +  K +    +   +  RG K     Y AL  GL
Sbjct: 349 SSHALAYALKLAQKCEEESIIVVNLSGRGDKDLSTVYNALKGGL 392


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,917,323
Number of Sequences: 219361
Number of extensions: 2030118
Number of successful extensions: 5172
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 4973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5156
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result