Clone Information

BLAST Search Result

Clone Name	bags10b24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_479461.1\| Oryza sativa (japonica cultivar-group), mRNA	325	1e-85
2	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	325	1e-85
3	dbj\|AP004300.3\| Oryza sativa (japonica cultivar-group) genomic D...	325	1e-85
4	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	96	2e-16
5	dbj\|AP005829.3\| Oryza sativa (japonica cultivar-group) genomic D...	96	2e-16
6	gb\|AC158791.4\| Mus musculus chromosome 1, clone RP23-247C6, comp...	44	0.53
7	gb\|AC109240.30\| Mus musculus chromosome 1, clone RP23-445I23, co...	44	0.53
8	gb\|AC120736.4\| Rattus norvegicus 11 BAC CH230-252B13 (Children's...	44	0.53
9	gb\|AC152832.3\| Ornithorhynchus anatinus BAC clone OABb-104A1 fro...	44	0.53
10	gb\|BC060912.1\| Danio rerio wu:fe11b04, mRNA (cDNA clone IMAGE:41...	42	2.1
11	gb\|AC123044.4\| Mus musculus BAC clone RP24-548B7 from chromosome...	42	2.1
12	gb\|AC006398.2\| Homo sapiens BAC clone CTA-348C20 from 7, complet...	42	2.1
13	emb\|AL353612.9\| Human DNA sequence from clone RP5-986I17 on chro...	42	2.1
14	gb\|AC092758.3\| Papio anubis clone RP41-22J16, complete sequence	42	2.1
15	gb\|AC091621.4\| Papio anubis clone RP41-57J19, complete sequence	42	2.1
16	gb\|AE001437.1\| Clostridium acetobutylicum ATCC 824, complete genome	42	2.1
17	gb\|AC141896.5\| Mus musculus BAC clone RP23-238B2 from 5, complet...	42	2.1
18	gb\|CP000002.2\| Bacillus licheniformis ATCC 14580, complete genome	40	8.3
19	gb\|AE017333.1\| Bacillus licheniformis DSM 13, complete genome	40	8.3
20	gb\|AY349421.1\| Sus scrofa complement C1r mRNA, partial cds	40	8.3
21	gb\|AC091309.13\| Mus musculus chromosome 17, clone RP23-127L4, co...	40	8.3
22	gb\|AC183625.3\| Pan troglodytes BAC clone CH251-12B21 from chromo...	40	8.3
23	gb\|AC115116.6\| Mus musculus BAC clone RP23-62I3 from chromosome ...	40	8.3
24	gb\|AC104465.4\| Homo sapiens chromosome 1 clone RP5-1051D14, comp...	40	8.3
25	gb\|AC130809.25\| Medicago truncatula clone mth2-15i12, complete s...	40	8.3
26	gb\|AC151823.11\| Medicago truncatula clone mth2-45h2, complete se...	40	8.3
27	gb\|AY324105.1\| Cochliobolus victoriae acyl CoA ligase-like prote...	40	8.3
28	emb\|AL136080.6\| Human DNA sequence from clone RP11-448E12 on chr...	40	8.3
29	ref\|XM_783975.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	8.3
30	emb\|CR628337.1\| Legionella pneumophila str. Lens complete genome	40	8.3
31	emb\|BX294145.1\| Pirellula sp. strain 1 complete genome; segment ...	40	8.3
32	gb\|AC108508.2\| Genomic sequence for Mus musculus, clone RP23-437...	40	8.3
33	emb\|AL954250.1\| Pan troglodytes chromosome 22 clone RP43-013I15 ...	40	8.3
34	emb\|AL954249.1\| Pan troglodytes chromosome 22 clone PTB-105M10 m...	40	8.3
35	gb\|AC121765.2\| Homo sapiens chromosome 3 clone RP11-767D18, comp...	40	8.3
36	gb\|AC108935.5\| Homo sapiens BAC clone RP11-503L19 from 4, comple...	40	8.3
37	gb\|AC105100.5\| Homo sapiens, clone RP11-448D22, complete sequence	40	8.3
38	gb\|AC107983.3\| Homo sapiens chromosome 17, clone CTD-2303H24, co...	40	8.3
39	ref\|NM_182568.2\| Homo sapiens hypothetical protein FLJ36492 (FLJ...	40	8.3
40	ref\|XM_930399.1\| PREDICTED: Homo sapiens KIAA0565 gene product, ...	40	8.3
41	gb\|AC010677.4\| Homo sapiens chromosome 7 clone CTD-2304L4, compl...	40	8.3
42	gb\|AC098850.2\| Homo sapiens chromosome 17, clone RP11-92B11, com...	40	8.3
43	gb\|AC118231.9\| Mus musculus chromosome 5, clone RP23-462J24, com...	40	8.3
44	gb\|AC155636.3\| Mus musculus BAC clone RP23-345F5 from chromosome...	40	8.3
45	tpg\|BK001591.1\| TPA: TPA_exp: Homo sapiens chromosome 17 proxima...	40	8.3
46	tpg\|BK001590.1\| TPA: TPA_exp: Homo sapiens chromosome 17 middle ...	40	8.3
47	tpg\|BK001589.1\| TPA: TPA_exp: Homo sapiens chromosome 17 distal ...	40	8.3
48	gb\|AC171739.3\| Cavia porcellus clone CH234-497P15, complete sequ...	40	8.3
49	gb\|AC126352.6\| Homo sapiens chromosome 17, clone CTD-2509K7, com...	40	8.3
50	gb\|AC009158.7\| Homo sapiens chromosome 16 clone RP11-67I10, comp...	40	8.3
51	gb\|AC093511.4\| Homo sapiens chromosome 16 clone CTD-2507C6, comp...	40	8.3
52	gb\|AC015818.32\| Homo sapiens chromosome 17, clone RP11-434D2, co...	40	8.3
53	gb\|AC134025.2\| Homo sapiens 3 BAC RP11-231I13 (Roswell Park Canc...	40	8.3
54	gb\|AC022596.9\|AC022596 Homo sapiens chromosome 17, clone RP11-21...	40	8.3
55	gb\|AC164660.3\| Pan troglodytes BAC clone CH251-50D16 from chromo...	40	8.3
56	dbj\|BA000022.2\| Synechocystis sp. PCC 6803 DNA, complete genome	40	8.3
57	dbj\|AP006273.1\| Papio hamadryas genomic DNA, BAC clone: RPCI41-3...	40	8.3
58	dbj\|AP006272.1\| Pan troglodytes genomic DNA, BAC clone: RPCI43-1...	40	8.3
59	dbj\|AP006271.1\| Pan troglodytes genomic DNA, BAC clone: RPCI43-1...	40	8.3
60	emb\|BX647826.1\|HSM807972 Homo sapiens mRNA; cDNA DKFZp686G1086 (...	40	8.3
61	emb\|AJ332314.1\|HSA332314 Homo sapiens genomic sequence surroundi...	40	8.3
62	dbj\|AP001754.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	8.3
63	emb\|AL773602.1\|HS314N7 Homo sapiens chromosome 21 from PAC RP1-3...	40	8.3
64	emb\|BX001020.6\| Mouse DNA sequence from clone RP23-167B1 on chro...	40	8.3
65	emb\|AL772278.7\| Mouse DNA sequence from clone RP23-416G5 on chro...	40	8.3
66	dbj\|AP001067.1\| Homo sapiens genomic DNA, chromosome 21, clone:K...	40	8.3
67	emb\|AL731654.7\| Mouse DNA sequence from clone RP23-376I2 on chro...	40	8.3

>ref|XM_479461.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1656

 Score =  325 bits (164), Expect = 1e-85
 Identities = 359/424 (84%)
 Strand = Plus / Plus

                                                                        
Query: 22   ggtgacatggtagaggcaagaaggttgttccgagatatggaaggtaaggggtcaagaccg 81
            ||||||||||| |||||||||||| |||| ||||| |||| ||| || ||| ||  ||| 
Sbjct: 1204 ggtgacatggtcgaggcaagaaggctgtttcgagagatggcaggaaatggggcagaacct 1263

                                                                        
Query: 82   agtgttgtaacctacaatgtcatgattgatgggtacatcaagagtgggagcatacgcgaa 141
            ||| | |||||||||||||| ||||| ||||||||||||||||  ||||||||||| || 
Sbjct: 1264 agtctggtaacctacaatgttatgatggatgggtacatcaagaaggggagcatacgggag 1323

                                                                        
Query: 142  gccgagcggttcaaaaaggagatggagaagaaagggcttgttccagatgtatacacttac 201
            || ||| |||||||||| |||||||| ||||||||||||||||||||  ||||| |||| 
Sbjct: 1324 gctgagaggttcaaaaatgagatggaaaagaaagggcttgttccagacatatactcttat 1383

                                                                        
Query: 202  gccgcactagttcatgggcactgtgtcaatgggaaggtggatgtggcactccggttgttt 261
            || ||  |||| |||||||||||||||||||||||||||||||||||| |  || |||||
Sbjct: 1384 gcagcgttagtccatgggcactgtgtcaatgggaaggtggatgtggcattgaggctgttt 1443

                                                                        
Query: 262  gaagagatgaagcagaggggtgctaaacctaacgtcgtggcgtacacagctcttatatca 321
            ||||||||||||||||||||  ||||||| ||| | ||||| || || ||||| ||||| 
Sbjct: 1444 gaagagatgaagcagagggggtctaaacccaacttggtggcatatactgctctgatatcc 1503

                                                                        
Query: 322  ggtctagcaaaggaagggagatcagaggaggccttccagttttatgacaatatgttggca 381
            || || || |||||||| |||||||||||||| |||||||| || ||||||||| ||| |
Sbjct: 1504 ggcctggccaaggaaggaagatcagaggaggcattccagttgtacgacaatatgctggga 1563

                                                                        
Query: 382  gctggattgactccagatgatactctatattctatgcttgttgggagtcttcatacagat 441
            | ||||||||| ||||||||| |||| ||||||   ||||| ||||| ||||| || |||
Sbjct: 1564 gatggattgaccccagatgatgctctgtattctgcacttgtagggagccttcacacggat 1623

                
Query: 442  aaaa 445
            ||||
Sbjct: 1624 aaaa 1627

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  325 bits (164), Expect = 1e-85
 Identities = 359/424 (84%)
 Strand = Plus / Minus

                                                                            
Query: 22       ggtgacatggtagaggcaagaaggttgttccgagatatggaaggtaaggggtcaagaccg 81
                ||||||||||| |||||||||||| |||| ||||| |||| ||| || ||| ||  ||| 
Sbjct: 28320242 ggtgacatggtcgaggcaagaaggctgtttcgagagatggcaggaaatggggcagaacct 28320183

                                                                            
Query: 82       agtgttgtaacctacaatgtcatgattgatgggtacatcaagagtgggagcatacgcgaa 141
                ||| | |||||||||||||| ||||| ||||||||||||||||  ||||||||||| || 
Sbjct: 28320182 agtctggtaacctacaatgttatgatggatgggtacatcaagaaggggagcatacgggag 28320123

                                                                            
Query: 142      gccgagcggttcaaaaaggagatggagaagaaagggcttgttccagatgtatacacttac 201
                || ||| |||||||||| |||||||| ||||||||||||||||||||  ||||| |||| 
Sbjct: 28320122 gctgagaggttcaaaaatgagatggaaaagaaagggcttgttccagacatatactcttat 28320063

                                                                            
Query: 202      gccgcactagttcatgggcactgtgtcaatgggaaggtggatgtggcactccggttgttt 261
                || ||  |||| |||||||||||||||||||||||||||||||||||| |  || |||||
Sbjct: 28320062 gcagcgttagtccatgggcactgtgtcaatgggaaggtggatgtggcattgaggctgttt 28320003

                                                                            
Query: 262      gaagagatgaagcagaggggtgctaaacctaacgtcgtggcgtacacagctcttatatca 321
                ||||||||||||||||||||  ||||||| ||| | ||||| || || ||||| ||||| 
Sbjct: 28320002 gaagagatgaagcagagggggtctaaacccaacttggtggcatatactgctctgatatcc 28319943

                                                                            
Query: 322      ggtctagcaaaggaagggagatcagaggaggccttccagttttatgacaatatgttggca 381
                || || || |||||||| |||||||||||||| |||||||| || ||||||||| ||| |
Sbjct: 28319942 ggcctggccaaggaaggaagatcagaggaggcattccagttgtacgacaatatgctggga 28319883

                                                                            
Query: 382      gctggattgactccagatgatactctatattctatgcttgttgggagtcttcatacagat 441
                | ||||||||| ||||||||| |||| ||||||   ||||| ||||| ||||| || |||
Sbjct: 28319882 gatggattgaccccagatgatgctctgtattctgcacttgtagggagccttcacacggat 28319823

                    
Query: 442      aaaa 445
                ||||
Sbjct: 28319822 aaaa 28319819

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>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0470D12
          Length = 157248

 Score =  325 bits (164), Expect = 1e-85
 Identities = 359/424 (84%)
 Strand = Plus / Minus

                                                                         
Query: 22    ggtgacatggtagaggcaagaaggttgttccgagatatggaaggtaaggggtcaagaccg 81
             ||||||||||| |||||||||||| |||| ||||| |||| ||| || ||| ||  ||| 
Sbjct: 45805 ggtgacatggtcgaggcaagaaggctgtttcgagagatggcaggaaatggggcagaacct 45746

                                                                         
Query: 82    agtgttgtaacctacaatgtcatgattgatgggtacatcaagagtgggagcatacgcgaa 141
             ||| | |||||||||||||| ||||| ||||||||||||||||  ||||||||||| || 
Sbjct: 45745 agtctggtaacctacaatgttatgatggatgggtacatcaagaaggggagcatacgggag 45686

                                                                         
Query: 142   gccgagcggttcaaaaaggagatggagaagaaagggcttgttccagatgtatacacttac 201
             || ||| |||||||||| |||||||| ||||||||||||||||||||  ||||| |||| 
Sbjct: 45685 gctgagaggttcaaaaatgagatggaaaagaaagggcttgttccagacatatactcttat 45626

                                                                         
Query: 202   gccgcactagttcatgggcactgtgtcaatgggaaggtggatgtggcactccggttgttt 261
             || ||  |||| |||||||||||||||||||||||||||||||||||| |  || |||||
Sbjct: 45625 gcagcgttagtccatgggcactgtgtcaatgggaaggtggatgtggcattgaggctgttt 45566

                                                                         
Query: 262   gaagagatgaagcagaggggtgctaaacctaacgtcgtggcgtacacagctcttatatca 321
             ||||||||||||||||||||  ||||||| ||| | ||||| || || ||||| ||||| 
Sbjct: 45565 gaagagatgaagcagagggggtctaaacccaacttggtggcatatactgctctgatatcc 45506

                                                                         
Query: 322   ggtctagcaaaggaagggagatcagaggaggccttccagttttatgacaatatgttggca 381
             || || || |||||||| |||||||||||||| |||||||| || ||||||||| ||| |
Sbjct: 45505 ggcctggccaaggaaggaagatcagaggaggcattccagttgtacgacaatatgctggga 45446

                                                                         
Query: 382   gctggattgactccagatgatactctatattctatgcttgttgggagtcttcatacagat 441
             | ||||||||| ||||||||| |||| ||||||   ||||| ||||| ||||| || |||
Sbjct: 45445 gatggattgaccccagatgatgctctgtattctgcacttgtagggagccttcacacggat 45386

                 
Query: 442   aaaa 445
             ||||
Sbjct: 45385 aaaa 45382

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 124/148 (83%), Gaps = 1/148 (0%)
 Strand = Plus / Minus

                                                                           
Query: 259     tttgaagagatgaagcagaggggtgctaaacctaacgtcgtggcgtacacagctcttata 318
               |||||| |||||||||||||||||   | | | ||||| ||||| || |||||||| |||
Sbjct: 5033346 tttgaaaagatgaagcagaggggtttcagatccaacgt-gtggcatatacagctctgata 5033288

                                                                           
Query: 319     tcaggtctagcaaaggaagggagatcagaggaggccttccagttttatgacaatatgttg 378
               || || ||| | |||||| |||||||||||||||| |||||||| |||||||||||| ||
Sbjct: 5033287 tccggcctaaccaaggaaaggagatcagaggaggcattccagttgtatgacaatatgctg 5033228

                                           
Query: 379     gcagctggattgactccagatgatactc 406
               | || ||||||||  |||||||| ||||
Sbjct: 5033227 ggagatggattgaacccagatgacactc 5033200



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 124/151 (82%), Gaps = 1/151 (0%)
 Strand = Plus / Minus

                                                                           
Query: 22      ggtgacatggtagaggcaagaaggttgttccgagatatggaaggtaaggggtcaagaccg 81
               |||| |||||| |||||||||||| |||| | ||| |||| ||| || ||  ||| | | 
Sbjct: 5033566 ggtggcatggtcgaggcaagaaggctgtttcaagagatggcaggaaatggagcaaaatca 5033507

                                                                           
Query: 82      agtgttgtaacctacaatgtcatgattgatgggtacatcaagagtgggagcatacgcgaa 141
               ||| | |||||||||||||| ||||||||||| ||||||||||  ||||||| | |||| 
Sbjct: 5033506 agtctggtaacctacaatgttatgattgatgg-tacatcaagaaggggagcacatgcgag 5033448

                                              
Query: 142     gccgagcggttcaaaaaggagatggagaaga 172
               || ||  |||||| |||||||||||||||||
Sbjct: 5033447 gctgaaaggttcagaaaggagatggagaaga 5033417

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>dbj|AP005829.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1008E06
          Length = 170228

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 124/148 (83%), Gaps = 1/148 (0%)
 Strand = Plus / Minus

                                                                         
Query: 259   tttgaagagatgaagcagaggggtgctaaacctaacgtcgtggcgtacacagctcttata 318
             |||||| |||||||||||||||||   | | | ||||| ||||| || |||||||| |||
Sbjct: 35463 tttgaaaagatgaagcagaggggtttcagatccaacgt-gtggcatatacagctctgata 35405

                                                                         
Query: 319   tcaggtctagcaaaggaagggagatcagaggaggccttccagttttatgacaatatgttg 378
             || || ||| | |||||| |||||||||||||||| |||||||| |||||||||||| ||
Sbjct: 35404 tccggcctaaccaaggaaaggagatcagaggaggcattccagttgtatgacaatatgctg 35345

                                         
Query: 379   gcagctggattgactccagatgatactc 406
             | || ||||||||  |||||||| ||||
Sbjct: 35344 ggagatggattgaacccagatgacactc 35317



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 124/151 (82%), Gaps = 1/151 (0%)
 Strand = Plus / Minus

                                                                         
Query: 22    ggtgacatggtagaggcaagaaggttgttccgagatatggaaggtaaggggtcaagaccg 81
             |||| |||||| |||||||||||| |||| | ||| |||| ||| || ||  ||| | | 
Sbjct: 35683 ggtggcatggtcgaggcaagaaggctgtttcaagagatggcaggaaatggagcaaaatca 35624

                                                                         
Query: 82    agtgttgtaacctacaatgtcatgattgatgggtacatcaagagtgggagcatacgcgaa 141
             ||| | |||||||||||||| ||||||||||| ||||||||||  ||||||| | |||| 
Sbjct: 35623 agtctggtaacctacaatgttatgattgatgg-tacatcaagaaggggagcacatgcgag 35565

                                            
Query: 142   gccgagcggttcaaaaaggagatggagaaga 172
             || ||  |||||| |||||||||||||||||
Sbjct: 35564 gctgaaaggttcagaaaggagatggagaaga 35534

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>gb|AC158791.4| Mus musculus chromosome 1, clone RP23-247C6, complete sequence
          Length = 218755

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 439   gataaaagaaaagatgaaatcc 460
             ||||||||||||||||||||||
Sbjct: 76135 gataaaagaaaagatgaaatcc 76114

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>gb|AC109240.30| Mus musculus chromosome 1, clone RP23-445I23, complete sequence
          Length = 189545

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 439   gataaaagaaaagatgaaatcc 460
             ||||||||||||||||||||||
Sbjct: 62068 gataaaagaaaagatgaaatcc 62089

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>gb|AC120736.4| Rattus norvegicus 11 BAC CH230-252B13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 82009

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 149   ggttcaaaaaggagatggagaa 170
             ||||||||||||||||||||||
Sbjct: 28365 ggttcaaaaaggagatggagaa 28386

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>gb|AC152832.3| Ornithorhynchus anatinus BAC clone OABb-104A1 from chromosome unknown,
              complete sequence
          Length = 161382

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 332    aggaagggagatcagaggaggc 353
              ||||||||||||||||||||||
Sbjct: 141785 aggaagggagatcagaggaggc 141764

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>gb|BC060912.1| Danio rerio wu:fe11b04, mRNA (cDNA clone IMAGE:4144592), partial
           cds
          Length = 2954

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 259 tttgaagagatgaagcagagg 279
           |||||||||||||||||||||
Sbjct: 308 tttgaagagatgaagcagagg 328

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>gb|AC123044.4| Mus musculus BAC clone RP24-548B7 from chromosome 5, complete sequence
          Length = 184772

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 329    caaaggaagggagatcagagg 349
              |||||||||||||||||||||
Sbjct: 173049 caaaggaagggagatcagagg 173029

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>gb|AC006398.2| Homo sapiens BAC clone CTA-348C20 from 7, complete sequence
          Length = 92611

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 561  acaccaacactgatttggtga 581
            |||||||||||||||||||||
Sbjct: 9848 acaccaacactgatttggtga 9828

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>emb|AL353612.9| Human DNA sequence from clone RP5-986I17 on chromosome 20 Contains part
             of the PAK7 gene for p21(CDKN1A)-activated kinase 7 and a
             novel gene, complete sequence
          Length = 53864

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 22    ggtgacatggtagaggcaagaaggt 46
             |||||||||||||||||||| ||||
Sbjct: 14359 ggtgacatggtagaggcaagcaggt 14383

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>gb|AC092758.3| Papio anubis clone RP41-22J16, complete sequence
          Length = 171690

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 561    acaccaacactgatttggtga 581
              |||||||||||||||||||||
Sbjct: 166287 acaccaacactgatttggtga 166267

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>gb|AC091621.4| Papio anubis clone RP41-57J19, complete sequence
          Length = 101443

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 561   acaccaacactgatttggtga 581
             |||||||||||||||||||||
Sbjct: 26032 acaccaacactgatttggtga 26012

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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 438     agataaaagaaaagatgaaat 458
               |||||||||||||||||||||
Sbjct: 1177268 agataaaagaaaagatgaaat 1177288

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>gb|AC141896.5| Mus musculus BAC clone RP23-238B2 from 5, complete sequence
          Length = 240890

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 329   caaaggaagggagatcagagg 349
             |||||||||||||||||||||
Sbjct: 21681 caaaggaagggagatcagagg 21661

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>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 151    ttcaaaaaggagatggagaagaaa 174
              |||||||||||||||||| |||||
Sbjct: 821981 ttcaaaaaggagatggagcagaaa 821958

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>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 151    ttcaaaaaggagatggagaagaaa 174
              |||||||||||||||||| |||||
Sbjct: 822283 ttcaaaaaggagatggagcagaaa 822260

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>gb|AY349421.1| Sus scrofa complement C1r mRNA, partial cds
          Length = 1193

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 152  tcaaaaaggagatggagaag 171
            ||||||||||||||||||||
Sbjct: 1145 tcaaaaaggagatggagaag 1164

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>gb|AC091309.13| Mus musculus chromosome 17, clone RP23-127L4, complete sequence
          Length = 184755

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 164  tggagaagaaagggcttgtt 183
            ||||||||||||||||||||
Sbjct: 5668 tggagaagaaagggcttgtt 5687

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>gb|AC183625.3| Pan troglodytes BAC clone CH251-12B21 from chromosome 17, complete
            sequence
          Length = 134326

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 407  tatattctatgcttgttggg 426
            ||||||||||||||||||||
Sbjct: 8024 tatattctatgcttgttggg 8043

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>gb|AC115116.6| Mus musculus BAC clone RP23-62I3 from chromosome 1, complete sequence
          Length = 231896

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 457    atcccatgaagaatgctggt 476
              ||||||||||||||||||||
Sbjct: 136105 atcccatgaagaatgctggt 136086

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>gb|AC104465.4| Homo sapiens chromosome 1 clone RP5-1051D14, complete sequence
          Length = 144786

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   aaggagatggagaagaaagg 176
             ||||||||||||||||||||
Sbjct: 62465 aaggagatggagaagaaagg 62484

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>gb|AC130809.25| Medicago truncatula clone mth2-15i12, complete sequence
          Length = 114664

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 158    aggagatggagaagaaaggg 177
              ||||||||||||||||||||
Sbjct: 110026 aggagatggagaagaaaggg 110007

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>gb|AC151823.11| Medicago truncatula clone mth2-45h2, complete sequence
          Length = 125855

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   aggagatggagaagaaaggg 177
             ||||||||||||||||||||
Sbjct: 32046 aggagatggagaagaaaggg 32065

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>gb|AY324105.1| Cochliobolus victoriae acyl CoA ligase-like protein (CPS1) gene,
           partial cds
          Length = 2507

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 153 caaaaaggagatggagaagaaagg 176
           ||||||||||| ||||||||||||
Sbjct: 861 caaaaaggagaaggagaagaaagg 884

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>emb|AL136080.6| Human DNA sequence from clone RP11-448E12 on chromosome Xq22.1-23
             Contains part of the COL4A6 gene for collagen type IV
             alpha 6, complete sequence
          Length = 116106

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 553   aaaggctgacaccaacactg 572
             ||||||||||||||||||||
Sbjct: 13257 aaaggctgacaccaacactg 13238

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>ref|XM_783975.1| PREDICTED: Strongylocentrotus purpuratus similar to polymerase
            (DNA-directed), alpha (LOC584095), mRNA
          Length = 3819

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 325  ctagcaaaggaagggagatc 344
            ||||||||||||||||||||
Sbjct: 2372 ctagcaaaggaagggagatc 2391

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>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 431    ttcatacagataaaagaaaa 450
              ||||||||||||||||||||
Sbjct: 664817 ttcatacagataaaagaaaa 664798

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>emb|BX294145.1| Pirellula sp. strain 1 complete genome; segment 13/24
          Length = 300350

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 504    tgtgtgaccgagatcccggc 523
              ||||||||||||||||||||
Sbjct: 294114 tgtgtgaccgagatcccggc 294095

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>gb|AC108508.2| Genomic sequence for Mus musculus, clone RP23-437O14, complete sequence
          Length = 196162

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    caaaaaggagatggagaaga 172
              ||||||||||||||||||||
Sbjct: 133127 caaaaaggagatggagaaga 133146

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>emb|AL954250.1| Pan troglodytes chromosome 22 clone RP43-013I15 map 22q22.3,
           complete sequence
          Length = 192447

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 153 caaaaaggagatggagaagaaagg 176
           ||||||||||| ||||||||||||
Sbjct: 80  caaaaaggagaaggagaagaaagg 57

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>emb|AL954249.1| Pan troglodytes chromosome 22 clone PTB-105M10 map 22q22.3, complete
             sequence
          Length = 182974

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 153   caaaaaggagatggagaagaaagg 176
             ||||||||||| ||||||||||||
Sbjct: 53430 caaaaaggagaaggagaagaaagg 53407

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>gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, complete sequence
          Length = 194455

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 440   ataaaagaaaagatgaaatc 459
             ||||||||||||||||||||
Sbjct: 10979 ataaaagaaaagatgaaatc 10998

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>gb|AC108935.5| Homo sapiens BAC clone RP11-503L19 from 4, complete sequence
          Length = 133531

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 327   agcaaaggaagggagatcagagga 350
             ||||||||||||||||| ||||||
Sbjct: 91702 agcaaaggaagggagattagagga 91725

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>gb|AC105100.5| Homo sapiens, clone RP11-448D22, complete sequence
          Length = 167889

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 407    tatattctatgcttgttggg 426
              ||||||||||||||||||||
Sbjct: 130148 tatattctatgcttgttggg 130129

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>gb|AC107983.3| Homo sapiens chromosome 17, clone CTD-2303H24, complete sequence
          Length = 130561

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 407   tatattctatgcttgttggg 426
             ||||||||||||||||||||
Sbjct: 75795 tatattctatgcttgttggg 75814

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>ref|NM_182568.2| Homo sapiens hypothetical protein FLJ36492 (FLJ36492), mRNA
          Length = 8704

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 407  tatattctatgcttgttggg 426
            ||||||||||||||||||||
Sbjct: 8215 tatattctatgcttgttggg 8196

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>ref|XM_930399.1| PREDICTED: Homo sapiens KIAA0565 gene product, transcript variant 1
            (KIAA0565), mRNA
          Length = 8758

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 407  tatattctatgcttgttggg 426
            ||||||||||||||||||||
Sbjct: 8201 tatattctatgcttgttggg 8182

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>gb|AC010677.4| Homo sapiens chromosome 7 clone CTD-2304L4, complete sequence
          Length = 112659

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 330    aaaggaagggagatcagagg 349
              ||||||||||||||||||||
Sbjct: 110788 aaaggaagggagatcagagg 110807

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>gb|AC098850.2| Homo sapiens chromosome 17, clone RP11-92B11, complete sequence
          Length = 178965

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 407    tatattctatgcttgttggg 426
              ||||||||||||||||||||
Sbjct: 153667 tatattctatgcttgttggg 153648

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>gb|AC118231.9| Mus musculus chromosome 5, clone RP23-462J24, complete sequence
          Length = 186083

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 433    catacagataaaagaaaagatgaa 456
              |||| |||||||||||||||||||
Sbjct: 127349 catagagataaaagaaaagatgaa 127372

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>gb|AC155636.3| Mus musculus BAC clone RP23-345F5 from chromosome 17, complete sequence
          Length = 223528

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   tggagaagaaagggcttgtt 183
             ||||||||||||||||||||
Sbjct: 19923 tggagaagaaagggcttgtt 19904

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>tpg|BK001591.1| TPA: TPA_exp: Homo sapiens chromosome 17 proximal SMS-REP low-copy
             repeat, genomic sequence
          Length = 255901

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 407   tatattctatgcttgttggg 426
             ||||||||||||||||||||
Sbjct: 87129 tatattctatgcttgttggg 87110

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>tpg|BK001590.1| TPA: TPA_exp: Homo sapiens chromosome 17 middle SMS-REP low-copy repeat,
              genomic sequence
          Length = 240806

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 407    tatattctatgcttgttggg 426
              ||||||||||||||||||||
Sbjct: 153190 tatattctatgcttgttggg 153209

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>tpg|BK001589.1| TPA: TPA_exp: Homo sapiens chromosome 17 distal SMS-REP low-copy
             repeat, genomic sequence
          Length = 176482

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 407   tatattctatgcttgttggg 426
             ||||||||||||||||||||
Sbjct: 89710 tatattctatgcttgttggg 89691

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>gb|AC171739.3| Cavia porcellus clone CH234-497P15, complete sequence
          Length = 158596

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 440   ataaaagaaaagatgaaatc 459
             ||||||||||||||||||||
Sbjct: 22628 ataaaagaaaagatgaaatc 22609

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>gb|AC126352.6| Homo sapiens chromosome 17, clone CTD-2509K7, complete sequence
          Length = 211403

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 407   tatattctatgcttgttggg 426
             ||||||||||||||||||||
Sbjct: 89363 tatattctatgcttgttggg 89382

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>gb|AC009158.7| Homo sapiens chromosome 16 clone RP11-67I10, complete sequence
          Length = 161248

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   aggagatggagaagaaaggg 177
             ||||||||||||||||||||
Sbjct: 27336 aggagatggagaagaaaggg 27317

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>gb|AC093511.4| Homo sapiens chromosome 16 clone CTD-2507C6, complete sequence
          Length = 189250

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   aggagatggagaagaaaggg 177
             ||||||||||||||||||||
Sbjct: 34150 aggagatggagaagaaaggg 34169

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>gb|AC015818.32| Homo sapiens chromosome 17, clone RP11-434D2, complete sequence
          Length = 194767

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 407   tatattctatgcttgttggg 426
             ||||||||||||||||||||
Sbjct: 21985 tatattctatgcttgttggg 21966

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>gb|AC134025.2| Homo sapiens 3 BAC RP11-231I13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 183111

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 440    ataaaagaaaagatgaaatc 459
              ||||||||||||||||||||
Sbjct: 160458 ataaaagaaaagatgaaatc 160439

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>gb|AC022596.9|AC022596 Homo sapiens chromosome 17, clone RP11-219A15, complete sequence
          Length = 192337

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 407   tatattctatgcttgttggg 426
             ||||||||||||||||||||
Sbjct: 97384 tatattctatgcttgttggg 97403

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>gb|AC164660.3| Pan troglodytes BAC clone CH251-50D16 from chromosome unknown, complete
              sequence
          Length = 246546

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 158    aggagatggagaagaaaggg 177
              ||||||||||||||||||||
Sbjct: 219374 aggagatggagaagaaaggg 219355

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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 6       cgaggattccaaggagggtg 25
               ||||||||||||||||||||
Sbjct: 2412202 cgaggattccaaggagggtg 2412183

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>dbj|AP006273.1| Papio hamadryas genomic DNA, BAC clone: RPCI41-30J10, chromosome 3,
             complete sequence
          Length = 183435

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 153   caaaaaggagatggagaagaaagg 176
             ||||||||||| ||||||||||||
Sbjct: 75047 caaaaaggagaaggagaagaaagg 75024

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>dbj|AP006272.1| Pan troglodytes genomic DNA, BAC clone: RPCI43-100O24, chromosome 22,
             complete sequence
          Length = 175178

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 153   caaaaaggagatggagaagaaagg 176
             ||||||||||| ||||||||||||
Sbjct: 22799 caaaaaggagaaggagaagaaagg 22776

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>dbj|AP006271.1| Pan troglodytes genomic DNA, BAC clone: RPCI43-155P15, chromosome 22,
             complete sequence
          Length = 129950

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 153   caaaaaggagatggagaagaaagg 176
             ||||||||||| ||||||||||||
Sbjct: 98791 caaaaaggagaaggagaagaaagg 98768

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>emb|BX647826.1|HSM807972 Homo sapiens mRNA; cDNA DKFZp686G1086 (from clone DKFZp686G1086)
          Length = 8704

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 407  tatattctatgcttgttggg 426
            ||||||||||||||||||||
Sbjct: 8215 tatattctatgcttgttggg 8196

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>emb|AJ332314.1|HSA332314 Homo sapiens genomic sequence surrounding NotI site, clone
           NL6-LP10R
          Length = 486

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 542 caggactgctgaaaggctga 561
           ||||||||||||||||||||
Sbjct: 148 caggactgctgaaaggctga 167

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>dbj|AP001754.1| Homo sapiens genomic DNA, chromosome 21q, section 98/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 153    caaaaaggagatggagaagaaagg 176
              ||||||||||| ||||||||||||
Sbjct: 301372 caaaaaggagaaggagaagaaagg 301349

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>emb|AL773602.1|HS314N7 Homo sapiens chromosome 21 from PAC RP1-314N7, map 21q22.3
          Length = 121590

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 153   caaaaaggagatggagaagaaagg 176
             ||||||||||| ||||||||||||
Sbjct: 20556 caaaaaggagaaggagaagaaagg 20533

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>emb|BX001020.6| Mouse DNA sequence from clone RP23-167B1 on chromosome 4, complete
             sequence
          Length = 74555

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 406   ctatattctatgcttgttgggagtcttc 433
             |||| ||||||| |||||||||||||||
Sbjct: 46996 ctattttctatgtttgttgggagtcttc 46969

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>emb|AL772278.7| Mouse DNA sequence from clone RP23-416G5 on chromosome 4, complete
             sequence
          Length = 199565

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   aaaggagatggagaagaaag 175
             ||||||||||||||||||||
Sbjct: 70743 aaaggagatggagaagaaag 70724

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>dbj|AP001067.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1399C7, MX1-D21S171
             region, complete sequence
          Length = 148845

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 153   caaaaaggagatggagaagaaagg 176
             ||||||||||| ||||||||||||
Sbjct: 71195 caaaaaggagaaggagaagaaagg 71172

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>emb|AL731654.7| Mouse DNA sequence from clone RP23-376I2 on chromosome 4, complete
             sequence
          Length = 49798

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   caaaaaggagatggagaaga 172
             ||||||||||||||||||||
Sbjct: 14360 caaaaaggagatggagaaga 14379


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,609,189
Number of Sequences: 3902068
Number of extensions: 5609189
Number of successful extensions: 111150
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110776
Number of HSP's gapped (non-prelim): 370
length of query: 608
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 585
effective length of database: 17,143,297,704
effective search space: 10028829156840
effective search space used: 10028829156840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result