Clone Information

BLAST Search Result

Clone Name	bags10b20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK066657.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	620	e-174
2	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	151	4e-33
3	dbj\|AP003229.3\| Oryza sativa (japonica cultivar-group) genomic D...	151	4e-33
4	dbj\|AP003292.2\| Oryza sativa (japonica cultivar-group) genomic D...	151	4e-33
5	ref\|NM_119099.2\| Arabidopsis thaliana unknown protein AT4G29540 ...	86	2e-13
6	ref\|NM_001036672.1\| Arabidopsis thaliana unknown protein AT4G295...	86	2e-13
7	gb\|AY142528.1\| Arabidopsis thaliana putative UDP-N-acetylglucosa...	86	2e-13
8	dbj\|AK175463.1\| Arabidopsis thaliana mRNA for UDP-N-acetylglucos...	82	3e-12
9	emb\|AL079344.1\|ATT16L4 Arabidopsis thaliana DNA chromosome 4, BA...	70	1e-08
10	emb\|AL161575.2\|ATCHRIV71 Arabidopsis thaliana DNA chromosome 4, ...	70	1e-08
11	dbj\|AK077379.1\| Mus musculus 6 days neonate head cDNA, RIKEN ful...	44	0.62
12	dbj\|AK042464.1\| Mus musculus 3 days neonate thymus cDNA, RIKEN f...	44	0.62
13	dbj\|AK076602.1\| Mus musculus adult male testis cDNA, RIKEN full-...	44	0.62
14	gb\|AC068294.26\|AC068294 Mus musculus 3 BAC RP23-418O21 (Roswell ...	44	0.62
15	emb\|AL139395.7\| Human DNA sequence from clone RP11-130N24 on chr...	42	2.4
16	gb\|AC104596.4\| Homo sapiens BAC clone RP11-54P19 from 4, complet...	42	2.4
17	gb\|AC113968.12\| Mus musculus chromosome 8, clone RP23-120M17, co...	40	9.6
18	gb\|AC167201.6\| Mus musculus 10 BAC RP23-402J11 (Roswell Park Can...	40	9.6
19	gb\|DQ002407.1\| Zea mays copia retrotransposon opie1, gypsy retro...	40	9.6
20	gb\|AC116953.5\| Mus musculus BAC clone RP23-119H17 from chromosom...	40	9.6
21	ref\|XM_785059.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	9.6
22	emb\|AL356419.10\| Human DNA sequence from clone RP11-99L6 on chro...	40	9.6
23	ref\|XM_790654.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	9.6
24	gb\|AC158971.4\| Mus musculus chromosome 15, clone RP24-204H21, co...	40	9.6
25	ref\|XM_786492.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	9.6
26	gb\|AC044784.11\| Homo sapiens chromosome 10 clone RP11-428L9, com...	40	9.6
27	gb\|AC105352.2\| Drosophila melanogaster X BAC RP98-45O17 (Roswell...	40	9.6
28	ref\|NM_131926.1\| Drosophila melanogaster CG15570-RA (CG15570), mRNA	40	9.6
29	emb\|BX664706.9\| Zebrafish DNA sequence from clone CH211-251F6 in...	40	9.6
30	gb\|AE004993.1\| Halobacterium sp. NRC-1 section 24 of 170 of the ...	40	9.6
31	gb\|AC005658.3\|AC005658 citb_11_o_6, complete sequence	40	9.6
32	gb\|AC005659.3\|AC005659 citb_161_g_12, complete sequence	40	9.6
33	gb\|AE003430.4\| Drosophila melanogaster chromosome X, section 14 ...	40	9.6
34	dbj\|AP003082.3\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	9.6
35	gb\|AC108415.10\| Mus musculus chromosome 15, clone RP23-341K14, c...	40	9.6
36	emb\|CR956622.12\| Pig DNA sequence from clone PigE-219N9 on chrom...	40	9.6
37	gb\|AC170603.2\| Mus musculus BAC clone RP23-140J10 from chromosom...	40	9.6
38	gb\|AC159709.8\| Mus musculus 10 BAC RP23-136O17 (Roswell Park Can...	40	9.6

>dbj|AK066657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069K22, full
            insert sequence
          Length = 1510

 Score =  620 bits (313), Expect = e-174
 Identities = 564/647 (87%), Gaps = 3/647 (0%)
 Strand = Plus / Plus

                                                                        
Query: 53   gaaaacaatgtaattgggaactatgccgtggttggtgttaagtgccaagatctcaaatat 112
            ||||||||||| |||||  || | || || |||||||||||||||||||||||||| |||
Sbjct: 358  gaaaacaatgtcattggacaccacgctgtagttggtgttaagtgccaagatctcaagtat 417

                                                                        
Query: 113  aagccaggagatgaatgctttctacacattggtaacaacaatgagatcagagagtactgc 172
            ||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| 
Sbjct: 418  aagtcaggagatgaatgctttctacagattggtaacaataatgagatcagagagtactgt 477

                                                                        
Query: 173  tctattcaccgatcttctaaatcttgtgactgcacggttattggtgacaataatctcata 232
            |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 478  tctattcatcgctcttctaaatcttgtgactgcacggttattggtgacaataatcttata 537

                                                                        
Query: 233  atggggtcctgccatatagcacatgactgcaagattggtagcaataacatcttcgctaat 292
            ||||| || ||||||||||||||||| |||| |||||| | ||||||||| || ||||| 
Sbjct: 538  atgggttcatgccatatagcacatgattgcaggattggcaacaataacatatttgctaac 597

                                                                        
Query: 293  aatactctatttggtggccatgttattgttgaagactacactcatactgctggggctgtc 352
            ||||||||||||| |||||||||| |||||||||| | ||| |||||||| |||||||| 
Sbjct: 598  aatactctatttgctggccatgttgttgttgaagattgcacccatactgcaggggctgtt 657

                                                                        
Query: 353  gttgtccatcaattttgtcacattggatcattctcatttctaggcgggggctctgtggtt 412
            |||||||||||||||||||| ||||| ||||| ||||||||||| || ||||||||| | 
Sbjct: 658  gttgtccatcaattttgtcatattgggtcattttcatttctaggtggaggctctgtgatc 717

                                                                        
Query: 413  gcacaagatgttccaagatacacgatggttgcaggtgatagagcagagcttcgtggtctg 472
            ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 718  gcacaagatgtgccaagatacatgatggttgcaggtgatagagcagagcttcgtgggctg 777

                                                                        
Query: 473  aatcttgaaggtctcaggcgcaacggtttctcggaccaagaggtacggagcctaaggaaa 532
            |||||||||||||| | |||||| |||||||| ||||||||||||||||   | ||||||
Sbjct: 778  aatcttgaaggtcttaagcgcaatggtttctcagaccaagaggtacggatgttgaggaaa 837

                                                                        
Query: 533  gcatattggaaagtatttatgccagccagtagttcccaaagcaactttgaagaccgactc 592
            || |||    |||||||||||||| | | || |   || || | |||||| ||  |||| 
Sbjct: 838  gcttatcaacaagtatttatgccatctattaatagtcagagtagctttgatgagagactt 897

                                                                        
Query: 593  gctgaactggaacgtgaaattgagctattggaatctccctctgtatcctgtatggtggaa 652
            |||||||||||||| ||||||||| |||  ||| |||    |||||||| ||||||||||
Sbjct: 898  gctgaactggaacgggaaattgagttatcagaaactc---atgtatcctatatggtggaa 954

                                                           
Query: 653  tctattcgcacctcatttgaccaaggacgtcgtggcatttgcaaatt 699
            ||||||||||  || |||| ||||||||||||||| |||||||||||
Sbjct: 955  tctattcgcatgtcctttggccaaggacgtcgtggaatttgcaaatt 1001

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  151 bits (76), Expect = 4e-33
 Identities = 97/104 (93%)
 Strand = Plus / Plus

                                                                            
Query: 413      gcacaagatgttccaagatacacgatggttgcaggtgatagagcagagcttcgtggtctg 472
                ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 30098813 gcacaagatgtgccaagatacatgatggttgcaggtgatagagcagagcttcgtgggctg 30098872

                                                            
Query: 473      aatcttgaaggtctcaggcgcaacggtttctcggaccaagaggt 516
                |||||||||||||| | |||||| |||||||| |||||||||||
Sbjct: 30098873 aatcttgaaggtcttaagcgcaatggtttctcagaccaagaggt 30098916



 Score =  147 bits (74), Expect = 6e-32
 Identities = 89/94 (94%)
 Strand = Plus / Plus

                                                                            
Query: 117      caggagatgaatgctttctacacattggtaacaacaatgagatcagagagtactgctcta 176
                |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 30097696 caggagatgaatgctttctacagattggtaacaataatgagatcagagagtactgttcta 30097755

                                                  
Query: 177      ttcaccgatcttctaaatcttgtgactgcacggt 210
                |||| || ||||||||||||||||||||||||||
Sbjct: 30097756 ttcatcgctcttctaaatcttgtgactgcacggt 30097789



 Score =  141 bits (71), Expect = 4e-30
 Identities = 107/119 (89%)
 Strand = Plus / Plus

                                                                            
Query: 208      ggttattggtgacaataatctcataatggggtcctgccatatagcacatgactgcaagat 267
                ||||||||||||||||||||| |||||||| || ||||||||||||||||| |||| |||
Sbjct: 30097864 ggttattggtgacaataatcttataatgggttcatgccatatagcacatgattgcaggat 30097923

                                                                           
Query: 268      tggtagcaataacatcttcgctaataatactctatttggtggccatgttattgttgaag 326
                ||| | ||||||||| || ||||| ||||||||||||| |||||||||| |||||||||
Sbjct: 30097924 tggcaacaataacatatttgctaacaatactctatttgctggccatgttgttgttgaag 30097982



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                            
Query: 335      catactgctggggctgtcgttgtccatcaattttgtcacattggatcattctcatttcta 394
                |||||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 30098075 catactgcaggggctgttgttgtccatcaattttgtcatattgggtcattttcatttcta 30098134

                                 
Query: 395      ggcgggggctctgtggt 411
                || || |||||||||||
Sbjct: 30098135 ggtggaggctctgtggt 30098151



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                            
Query: 634      tgtatcctgtatggtggaatctattcgcacctcatttgaccaaggacgtcgtggcatttg 693
                |||||||| ||||||||||||||||||||  || |||| ||||||||||||||| |||||
Sbjct: 30099608 tgtatcctatatggtggaatctattcgcatgtcctttggccaaggacgtcgtggaatttg 30099667

                      
Query: 694      caaatt 699
                ||||||
Sbjct: 30099668 caaatt 30099673



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                            
Query: 53       gaaaacaatgtaattgggaactatgccgtggttggtgttaagtgccaagatctcaaatat 112
                ||||||||||| |||||  || | || || |||||||||||||||||||||||||| |||
Sbjct: 30097451 gaaaacaatgtcattggacaccacgctgtagttggtgttaagtgccaagatctcaagtat 30097510

                   
Query: 113      aag 115
                |||
Sbjct: 30097511 aag 30097513

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>dbj|AP003229.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0022F10
          Length = 150498

 Score =  151 bits (76), Expect = 4e-33
 Identities = 97/104 (93%)
 Strand = Plus / Plus

                                                                        
Query: 413  gcacaagatgttccaagatacacgatggttgcaggtgatagagcagagcttcgtggtctg 472
            ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 3635 gcacaagatgtgccaagatacatgatggttgcaggtgatagagcagagcttcgtgggctg 3694

                                                        
Query: 473  aatcttgaaggtctcaggcgcaacggtttctcggaccaagaggt 516
            |||||||||||||| | |||||| |||||||| |||||||||||
Sbjct: 3695 aatcttgaaggtcttaagcgcaatggtttctcagaccaagaggt 3738



 Score =  147 bits (74), Expect = 6e-32
 Identities = 89/94 (94%)
 Strand = Plus / Plus

                                                                        
Query: 117  caggagatgaatgctttctacacattggtaacaacaatgagatcagagagtactgctcta 176
            |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 2518 caggagatgaatgctttctacagattggtaacaataatgagatcagagagtactgttcta 2577

                                              
Query: 177  ttcaccgatcttctaaatcttgtgactgcacggt 210
            |||| || ||||||||||||||||||||||||||
Sbjct: 2578 ttcatcgctcttctaaatcttgtgactgcacggt 2611



 Score =  141 bits (71), Expect = 4e-30
 Identities = 107/119 (89%)
 Strand = Plus / Plus

                                                                        
Query: 208  ggttattggtgacaataatctcataatggggtcctgccatatagcacatgactgcaagat 267
            ||||||||||||||||||||| |||||||| || ||||||||||||||||| |||| |||
Sbjct: 2686 ggttattggtgacaataatcttataatgggttcatgccatatagcacatgattgcaggat 2745

                                                                       
Query: 268  tggtagcaataacatcttcgctaataatactctatttggtggccatgttattgttgaag 326
            ||| | ||||||||| || ||||| ||||||||||||| |||||||||| |||||||||
Sbjct: 2746 tggcaacaataacatatttgctaacaatactctatttgctggccatgttgttgttgaag 2804



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                        
Query: 335  catactgctggggctgtcgttgtccatcaattttgtcacattggatcattctcatttcta 394
            |||||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 2897 catactgcaggggctgttgttgtccatcaattttgtcatattgggtcattttcatttcta 2956

                             
Query: 395  ggcgggggctctgtggt 411
            || || |||||||||||
Sbjct: 2957 ggtggaggctctgtggt 2973



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                        
Query: 634  tgtatcctgtatggtggaatctattcgcacctcatttgaccaaggacgtcgtggcatttg 693
            |||||||| ||||||||||||||||||||  || |||| ||||||||||||||| |||||
Sbjct: 4430 tgtatcctatatggtggaatctattcgcatgtcctttggccaaggacgtcgtggaatttg 4489

                  
Query: 694  caaatt 699
            ||||||
Sbjct: 4490 caaatt 4495



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                        
Query: 53   gaaaacaatgtaattgggaactatgccgtggttggtgttaagtgccaagatctcaaatat 112
            ||||||||||| |||||  || | || || |||||||||||||||||||||||||| |||
Sbjct: 2273 gaaaacaatgtcattggacaccacgctgtagttggtgttaagtgccaagatctcaagtat 2332

               
Query: 113  aag 115
            |||
Sbjct: 2333 aag 2335

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>dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0690B02
          Length = 153116

 Score =  151 bits (76), Expect = 4e-33
 Identities = 97/104 (93%)
 Strand = Plus / Plus

                                                                         
Query: 413   gcacaagatgttccaagatacacgatggttgcaggtgatagagcagagcttcgtggtctg 472
             ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 94803 gcacaagatgtgccaagatacatgatggttgcaggtgatagagcagagcttcgtgggctg 94862

                                                         
Query: 473   aatcttgaaggtctcaggcgcaacggtttctcggaccaagaggt 516
             |||||||||||||| | |||||| |||||||| |||||||||||
Sbjct: 94863 aatcttgaaggtcttaagcgcaatggtttctcagaccaagaggt 94906



 Score =  147 bits (74), Expect = 6e-32
 Identities = 89/94 (94%)
 Strand = Plus / Plus

                                                                         
Query: 117   caggagatgaatgctttctacacattggtaacaacaatgagatcagagagtactgctcta 176
             |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct: 93686 caggagatgaatgctttctacagattggtaacaataatgagatcagagagtactgttcta 93745

                                               
Query: 177   ttcaccgatcttctaaatcttgtgactgcacggt 210
             |||| || ||||||||||||||||||||||||||
Sbjct: 93746 ttcatcgctcttctaaatcttgtgactgcacggt 93779



 Score =  141 bits (71), Expect = 4e-30
 Identities = 107/119 (89%)
 Strand = Plus / Plus

                                                                         
Query: 208   ggttattggtgacaataatctcataatggggtcctgccatatagcacatgactgcaagat 267
             ||||||||||||||||||||| |||||||| || ||||||||||||||||| |||| |||
Sbjct: 93854 ggttattggtgacaataatcttataatgggttcatgccatatagcacatgattgcaggat 93913

                                                                        
Query: 268   tggtagcaataacatcttcgctaataatactctatttggtggccatgttattgttgaag 326
             ||| | ||||||||| || ||||| ||||||||||||| |||||||||| |||||||||
Sbjct: 93914 tggcaacaataacatatttgctaacaatactctatttgctggccatgttgttgttgaag 93972



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                         
Query: 335   catactgctggggctgtcgttgtccatcaattttgtcacattggatcattctcatttcta 394
             |||||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 94065 catactgcaggggctgttgttgtccatcaattttgtcatattgggtcattttcatttcta 94124

                              
Query: 395   ggcgggggctctgtggt 411
             || || |||||||||||
Sbjct: 94125 ggtggaggctctgtggt 94141



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                         
Query: 634   tgtatcctgtatggtggaatctattcgcacctcatttgaccaaggacgtcgtggcatttg 693
             |||||||| ||||||||||||||||||||  || |||| ||||||||||||||| |||||
Sbjct: 95598 tgtatcctatatggtggaatctattcgcatgtcctttggccaaggacgtcgtggaatttg 95657

                   
Query: 694   caaatt 699
             ||||||
Sbjct: 95658 caaatt 95663



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                         
Query: 53    gaaaacaatgtaattgggaactatgccgtggttggtgttaagtgccaagatctcaaatat 112
             ||||||||||| |||||  || | || || |||||||||||||||||||||||||| |||
Sbjct: 93441 gaaaacaatgtcattggacaccacgctgtagttggtgttaagtgccaagatctcaagtat 93500

                
Query: 113   aag 115
             |||
Sbjct: 93501 aag 93503

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>ref|NM_119099.2| Arabidopsis thaliana unknown protein AT4G29540 transcript variant
           AT4G29540.1 mRNA, complete cds
          Length = 1036

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 157/195 (80%)
 Strand = Plus / Plus

                                                                       
Query: 77  gccgtggttggtgttaagtgccaagatctcaaatataagccaggagatgaatgctttcta 136
           ||||||||||||||||| || |||||  | || || ||||  ||||||||||||||||| 
Sbjct: 361 gccgtggttggtgttaaatgtcaagacttgaagtacaagcatggagatgaatgctttctt 420

                                                                       
Query: 137 cacattggtaacaacaatgagatcagagagtactgctctattcaccgatcttctaaatct 196
             |||||||||||||||||| ||||| |||| |||||| |||||| | || || ||  | 
Sbjct: 421 tgcattggtaacaacaatgaaatcagggagttctgctcgattcacaggtcatcaaagccc 480

                                                                       
Query: 197 tgtgactgcacggttattggtgacaataatctcataatggggtcctgccatatagcacat 256
            ||||    ||||||||||||||||| ||||| || ||||| || || ||||| || |||
Sbjct: 481 agtgataaaacggttattggtgacaacaatctaatcatgggttcttgtcatatcgcccat 540

                          
Query: 257 gactgcaagattggt 271
           || || |||||||||
Sbjct: 541 gattgtaagattggt 555



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 68/83 (81%)
 Strand = Plus / Plus

                                                                       
Query: 395 ggcgggggctctgtggttgcacaagatgttccaagatacacgatggttgcaggtgataga 454
           ||||| || ||||||||  |||||||||||||||  |||| |||||| || || || |||
Sbjct: 679 ggcggtggttctgtggtctcacaagatgttccaaagtacatgatggtggctggagaaaga 738

                                  
Query: 455 gcagagcttcgtggtctgaatct 477
           || || ||||| ||| |||||||
Sbjct: 739 gccgaacttcgcggtttgaatct 761

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>ref|NM_001036672.1| Arabidopsis thaliana unknown protein AT4G29540 transcript variant
           AT4G29540.2 mRNA, complete cds
          Length = 1225

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 157/195 (80%)
 Strand = Plus / Plus

                                                                       
Query: 77  gccgtggttggtgttaagtgccaagatctcaaatataagccaggagatgaatgctttcta 136
           ||||||||||||||||| || |||||  | || || ||||  ||||||||||||||||| 
Sbjct: 407 gccgtggttggtgttaaatgtcaagacttgaagtacaagcatggagatgaatgctttctt 466

                                                                       
Query: 137 cacattggtaacaacaatgagatcagagagtactgctctattcaccgatcttctaaatct 196
             |||||||||||||||||| ||||| |||| |||||| |||||| | || || ||  | 
Sbjct: 467 tgcattggtaacaacaatgaaatcagggagttctgctcgattcacaggtcatcaaagccc 526

                                                                       
Query: 197 tgtgactgcacggttattggtgacaataatctcataatggggtcctgccatatagcacat 256
            ||||    ||||||||||||||||| ||||| || ||||| || || ||||| || |||
Sbjct: 527 agtgataaaacggttattggtgacaacaatctaatcatgggttcttgtcatatcgcccat 586

                          
Query: 257 gactgcaagattggt 271
           || || |||||||||
Sbjct: 587 gattgtaagattggt 601



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 68/83 (81%)
 Strand = Plus / Plus

                                                                       
Query: 395 ggcgggggctctgtggttgcacaagatgttccaagatacacgatggttgcaggtgataga 454
           ||||| || ||||||||  |||||||||||||||  |||| |||||| || || || |||
Sbjct: 725 ggcggtggttctgtggtctcacaagatgttccaaagtacatgatggtggctggagaaaga 784

                                  
Query: 455 gcagagcttcgtggtctgaatct 477
           || || ||||| ||| |||||||
Sbjct: 785 gccgaacttcgcggtttgaatct 807

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>gb|AY142528.1| Arabidopsis thaliana putative UDP-N-acetylglucosamine
           O-acyltransferase (At4g29540) mRNA, complete cds
          Length = 1036

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 157/195 (80%)
 Strand = Plus / Plus

                                                                       
Query: 77  gccgtggttggtgttaagtgccaagatctcaaatataagccaggagatgaatgctttcta 136
           ||||||||||||||||| || |||||  | || || ||||  ||||||||||||||||| 
Sbjct: 361 gccgtggttggtgttaaatgtcaagacttgaagtacaagcatggagatgaatgctttctt 420

                                                                       
Query: 137 cacattggtaacaacaatgagatcagagagtactgctctattcaccgatcttctaaatct 196
             |||||||||||||||||| ||||| |||| |||||| |||||| | || || ||  | 
Sbjct: 421 tgcattggtaacaacaatgaaatcagggagttctgctcgattcacaggtcatcaaagccc 480

                                                                       
Query: 197 tgtgactgcacggttattggtgacaataatctcataatggggtcctgccatatagcacat 256
            ||||    ||||||||||||||||| ||||| || ||||| || || ||||| || |||
Sbjct: 481 agtgataaaacggttattggtgacaacaatctaatcatgggttcttgtcatatcgcccat 540

                          
Query: 257 gactgcaagattggt 271
           || || |||||||||
Sbjct: 541 gattgtaagattggt 555



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 68/83 (81%)
 Strand = Plus / Plus

                                                                       
Query: 395 ggcgggggctctgtggttgcacaagatgttccaagatacacgatggttgcaggtgataga 454
           ||||| || ||||||||  |||||||||||||||  |||| |||||| || || || |||
Sbjct: 679 ggcggtggttctgtggtctcacaagatgttccaaagtacatgatggtggctggagaaaga 738

                                  
Query: 455 gcagagcttcgtggtctgaatct 477
           || || ||||| ||| |||||||
Sbjct: 739 gccgaacttcgcggtttgaatct 761

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>dbj|AK175463.1| Arabidopsis thaliana mRNA for UDP-N-acetylglucosamine
           O-acyltransferase - like protein, complete cds, clone:
           RAFL21-89-G19
          Length = 1225

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 89/105 (84%)
 Strand = Plus / Plus

                                                                       
Query: 77  gccgtggttggtgttaagtgccaagatctcaaatataagccaggagatgaatgctttcta 136
           ||||||||||||||||| || |||||  | || || ||||  ||||||||||||||||| 
Sbjct: 407 gccgtggttggtgttaaatgtcaagacttgaagtacaagcatggagatgaatgctttctt 466

                                                        
Query: 137 cacattggtaacaacaatgagatcagagagtactgctctattcac 181
             |||||||||||||||||| ||||| |||| |||||| ||||||
Sbjct: 467 tgcattggtaacaacaatgaaatcagggagttctgctcgattcac 511



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 68/83 (81%)
 Strand = Plus / Plus

                                                                       
Query: 395 ggcgggggctctgtggttgcacaagatgttccaagatacacgatggttgcaggtgataga 454
           ||||| || ||||||||  |||||||||||||||  |||| |||||| || || || |||
Sbjct: 725 ggcggtggttctgtggtctcacaagatgttccaaagtacatgatggtggctggagaaaga 784

                                  
Query: 455 gcagagcttcgtggtctgaatct 477
           || || ||||| ||| |||||||
Sbjct: 785 gccgaacttcgcggtttgaatct 807

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>emb|AL079344.1|ATT16L4 Arabidopsis thaliana DNA chromosome 4, BAC clone T16L4 (ESSA project)
          Length = 88011

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                        
Query: 119  ggagatgaatgctttctacacattggtaacaacaatgagatcagagagtactgctctatt 178
            |||||||||||||||||   |||||||||||||||||| ||||| |||| |||||| |||
Sbjct: 8571 ggagatgaatgctttctttgcattggtaacaacaatgaaatcagggagttctgctcgatt 8630

               
Query: 179  cac 181
            |||
Sbjct: 8631 cac 8633



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                        
Query: 208  ggttattggtgacaataatctcataatggggtcctgccatatagcacatgactgcaagat 267
            ||||||||||||||| ||||| || ||||| || || ||||| || ||||| || |||||
Sbjct: 8742 ggttattggtgacaacaatctaatcatgggttcttgtcatatcgcccatgattgtaagat 8801

                
Query: 268  tggt 271
            ||||
Sbjct: 8802 tggt 8805



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                        
Query: 414  cacaagatgttccaagatacacgatggttgcaggtgatagagcagagcttcgtggtctga 473
            |||||||||||||||  |||| |||||| || || || ||||| || ||||| ||| |||
Sbjct: 9096 cacaagatgttccaaagtacatgatggtggctggagaaagagccgaacttcgcggtttga 9155

                
Query: 474  atct 477
            ||||
Sbjct: 9156 atct 9159

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>emb|AL161575.2|ATCHRIV71 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 71
          Length = 200001

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                         
Query: 119   ggagatgaatgctttctacacattggtaacaacaatgagatcagagagtactgctctatt 178
             |||||||||||||||||   |||||||||||||||||| ||||| |||| |||||| |||
Sbjct: 33386 ggagatgaatgctttctttgcattggtaacaacaatgaaatcagggagttctgctcgatt 33445

                
Query: 179   cac 181
             |||
Sbjct: 33446 cac 33448



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                         
Query: 208   ggttattggtgacaataatctcataatggggtcctgccatatagcacatgactgcaagat 267
             ||||||||||||||| ||||| || ||||| || || ||||| || ||||| || |||||
Sbjct: 33557 ggttattggtgacaacaatctaatcatgggttcttgtcatatcgcccatgattgtaagat 33616

                 
Query: 268   tggt 271
             ||||
Sbjct: 33617 tggt 33620



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                         
Query: 414   cacaagatgttccaagatacacgatggttgcaggtgatagagcagagcttcgtggtctga 473
             |||||||||||||||  |||| |||||| || || || ||||| || ||||| ||| |||
Sbjct: 33911 cacaagatgttccaaagtacatgatggtggctggagaaagagccgaacttcgcggtttga 33970

                 
Query: 474   atct 477
             ||||
Sbjct: 33971 atct 33974

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>dbj|AK077379.1| Mus musculus 6 days neonate head cDNA, RIKEN full-length enriched
           library, clone:5430407H18 product:unclassifiable, full
           insert sequence
          Length = 428

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 147 acaacaatgagatcagagagta 168
           ||||||||||||||||||||||
Sbjct: 350 acaacaatgagatcagagagta 371

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>dbj|AK042464.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630094D22 product:unclassifiable, full
           insert sequence
          Length = 1562

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 147 acaacaatgagatcagagagta 168
           ||||||||||||||||||||||
Sbjct: 613 acaacaatgagatcagagagta 634

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>dbj|AK076602.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4921531D08 product:weakly similar to
            CG7394 PROTEIN [Drosophila melanogaster], full insert
            sequence
          Length = 2505

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 147  acaacaatgagatcagagagta 168
            ||||||||||||||||||||||
Sbjct: 1377 acaacaatgagatcagagagta 1398

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>gb|AC068294.26|AC068294 Mus musculus 3 BAC RP23-418O21 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 201750

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 147   acaacaatgagatcagagagta 168
             ||||||||||||||||||||||
Sbjct: 67591 acaacaatgagatcagagagta 67570

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>emb|AL139395.7| Human DNA sequence from clone RP11-130N24 on chromosome Xq13.3-21.2
             Contains the 3' end of gene KIAA2022, complete sequence
          Length = 146610

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 153   atgagatcagagagtactgct 173
             |||||||||||||||||||||
Sbjct: 87902 atgagatcagagagtactgct 87922

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>gb|AC104596.4| Homo sapiens BAC clone RP11-54P19 from 4, complete sequence
          Length = 168591

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 113  aagccaggagatgaatgcttt 133
            |||||||||||||||||||||
Sbjct: 3926 aagccaggagatgaatgcttt 3946

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>gb|AC113968.12| Mus musculus chromosome 8, clone RP23-120M17, complete sequence
          Length = 220191

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    gaatgctttctacacattgg 144
              ||||||||||||||||||||
Sbjct: 214495 gaatgctttctacacattgg 214514

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>gb|AC167201.6| Mus musculus 10 BAC RP23-402J11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 216676

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 448    tgatagagcagagcttcgtg 467
              ||||||||||||||||||||
Sbjct: 122745 tgatagagcagagcttcgtg 122764

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>gb|DQ002407.1| Zea mays copia retrotransposon opie1, gypsy retrotransposon grande1,
              xilon1 retrotransposon, helitron B73_14578, gypsy
              retrotransposon huck1 and ruda retrotransposon, complete
              sequence
          Length = 152384

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 609    aaattgagctattggaatct 628
              ||||||||||||||||||||
Sbjct: 128819 aaattgagctattggaatct 128800

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>gb|AC116953.5| Mus musculus BAC clone RP23-119H17 from chromosome 7, complete sequence
          Length = 193506

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 526   aaggaaagcatattggaaag 545
             ||||||||||||||||||||
Sbjct: 83538 aaggaaagcatattggaaag 83557

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>ref|XM_785059.1| PREDICTED: Strongylocentrotus purpuratus similar to CG5841-PA
           (LOC585226), partial mRNA
          Length = 1384

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 625 atctccctctgtatcctgta 644
           ||||||||||||||||||||
Sbjct: 546 atctccctctgtatcctgta 527

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>emb|AL356419.10| Human DNA sequence from clone RP11-99L6 on chromosome 10, complete
             sequence
          Length = 126232

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 401   ggctctgtggttgcacaaga 420
             ||||||||||||||||||||
Sbjct: 47484 ggctctgtggttgcacaaga 47465

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>ref|XM_790654.1| PREDICTED: Strongylocentrotus purpuratus similar to mindbomb homolog
            1 (LOC591075), mRNA
          Length = 3045

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 625  atctccctctgtatcctgta 644
            ||||||||||||||||||||
Sbjct: 1875 atctccctctgtatcctgta 1856

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>gb|AC158971.4| Mus musculus chromosome 15, clone RP24-204H21, complete sequence
          Length = 173184

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 525    taaggaaagcatattggaaa 544
              ||||||||||||||||||||
Sbjct: 122656 taaggaaagcatattggaaa 122637

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>ref|XM_786492.1| PREDICTED: Strongylocentrotus purpuratus similar to fatty acid
            synthase (LOC586721), mRNA
          Length = 7092

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 526  aaggaaagcatattggaaag 545
            ||||||||||||||||||||
Sbjct: 5099 aaggaaagcatattggaaag 5118

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>gb|AC044784.11| Homo sapiens chromosome 10 clone RP11-428L9, complete sequence
          Length = 179711

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     agttattggggaaaacaatg 62
              ||||||||||||||||||||
Sbjct: 125624 agttattggggaaaacaatg 125605

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>gb|AC105352.2| Drosophila melanogaster X BAC RP98-45O17 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 172784

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 208  ggttattggtgacaataatc 227
            ||||||||||||||||||||
Sbjct: 8936 ggttattggtgacaataatc 8917

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>ref|NM_131926.1| Drosophila melanogaster CG15570-RA (CG15570), mRNA
          Length = 4074

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 208  ggttattggtgacaataatc 227
            ||||||||||||||||||||
Sbjct: 3402 ggttattggtgacaataatc 3421

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>emb|BX664706.9| Zebrafish DNA sequence from clone CH211-251F6 in linkage group 20,
             complete sequence
          Length = 103574

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   ttttgtcacattggatcatt 384
             ||||||||||||||||||||
Sbjct: 36370 ttttgtcacattggatcatt 36389

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>gb|AE004993.1| Halobacterium sp. NRC-1 section 24 of 170 of the complete genome
          Length = 10286

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 581   gaagaccgactcgctgaactggaa 604
             ||||||||| ||||||||||||||
Sbjct: 10168 gaagaccgagtcgctgaactggaa 10145

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>gb|AC005658.3|AC005658 citb_11_o_6, complete sequence
          Length = 72449

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 401   ggctctgtggttgcacaaga 420
             ||||||||||||||||||||
Sbjct: 58187 ggctctgtggttgcacaaga 58168

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>gb|AC005659.3|AC005659 citb_161_g_12, complete sequence
          Length = 116058

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 401   ggctctgtggttgcacaaga 420
             ||||||||||||||||||||
Sbjct: 65407 ggctctgtggttgcacaaga 65426

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>gb|AE003430.4| Drosophila melanogaster chromosome X, section 14 of 74 of the complete
              sequence
          Length = 296227

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 208    ggttattggtgacaataatc 227
              ||||||||||||||||||||
Sbjct: 129140 ggttattggtgacaataatc 129159

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>dbj|AP003082.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-746C14, complete
              sequence
          Length = 189635

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 534    catattggaaagtatttatg 553
              ||||||||||||||||||||
Sbjct: 164865 catattggaaagtatttatg 164884

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>gb|AC108415.10| Mus musculus chromosome 15, clone RP23-341K14, complete sequence
          Length = 194640

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 525    taaggaaagcatattggaaa 544
              ||||||||||||||||||||
Sbjct: 146370 taaggaaagcatattggaaa 146389

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>emb|CR956622.12| Pig DNA sequence from clone PigE-219N9 on chromosome 6, complete
             sequence
          Length = 174170

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 232   aatggggtcctgccatatagcaca 255
             ||||||||||||| ||||||||||
Sbjct: 95035 aatggggtcctgcaatatagcaca 95058

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>gb|AC170603.2| Mus musculus BAC clone RP23-140J10 from chromosome 8, complete sequence
          Length = 221596

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    gaatgctttctacacattgg 144
              ||||||||||||||||||||
Sbjct: 155587 gaatgctttctacacattgg 155606

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>gb|AC159709.8| Mus musculus 10 BAC RP23-136O17 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 202716

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 448   tgatagagcagagcttcgtg 467
             ||||||||||||||||||||
Sbjct: 31275 tgatagagcagagcttcgtg 31294


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,497,418
Number of Sequences: 3902068
Number of extensions: 5497418
Number of successful extensions: 95835
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95705
Number of HSP's gapped (non-prelim): 126
length of query: 703
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 680
effective length of database: 17,143,297,704
effective search space: 11657442438720
effective search space used: 11657442438720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result