>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 174 bits (88), Expect = 2e-40
Identities = 163/188 (86%)
Strand = Plus / Plus
Query: 476 gctatgaagcggttttctatagtgcttttgcgctggtactcatgggatggatatttcttg 535
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | |
Sbjct: 22407187 gctatgaagcggttttctatagtgcttttgcaatggtacttatgggatggatatttgtgg 22407246
Query: 536 aatctgccaacttgtattgctctgaaggaagcaattctgcgtgctacagtagccttgtgg 595
|||||||||||||||||||||| ||| || |||||| || |||||| ||||||
Sbjct: 22407247 aatctgccaacttgtattgctcagaacaaaatggttctgcacgccgtagtagcattgtgg 22407306
Query: 596 atggatcagtttatggctatgacgaaagatgcttacaactatctgatttacgaatccctc 655
| || ||| ||| |||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 22407307 agggctcaattttcggctatgatgaaagatgcttacaactatctgatctacgaatccctc 22407366
Query: 656 tgttattt 663
||||||||
Sbjct: 22407367 tgttattt 22407374
Score = 89.7 bits (45), Expect = 1e-14
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 65 catgctggttcctgtctgtattcacattgatgccagctgaaattccagagaataacaact 124
||||||||||||| ||| ||||||||||||||||||||||||||||||| || |||||||
Sbjct: 22405479 catgctggttcctatctttattcacattgatgccagctgaaattccagaaaacaacaact 22405538
Query: 125 t 125
|
Sbjct: 22405539 t 22405539
Score = 81.8 bits (41), Expect = 3e-12
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 373 ggttttgcgatggtgctaccgctcttttcaccttgtagcgttctatcccgtcttacatct 432
|||||||| ||||||||||| || |||||||| | || |||||||| || |||||||||
Sbjct: 22406987 ggttttgctatggtgctaccacttttttcaccatcaagtgttctatctcgccttacatct 22407046
Query: 433 atcttcttgggttttgccccttcgtttctgctgctttctattggctatg 481
||||||||||| ||||| ||| | ||||| |||| |||||||| ||||
Sbjct: 22407047 atcttcttgggatttgctcctccatttctattgctctctattgggtatg 22407095
Score = 67.9 bits (34), Expect = 4e-08
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 283 tcttcaattatggtgtggttaactacatctcatcggtctcagcacaaagaactgcaccca 342
||||| || ||||||||| || | || || || ||||||||| ||||| | |||||||||
Sbjct: 22405981 tcttctataatggtgtggatatcgacctcgcaccggtctcagaacaaacagctgcaccca 22406040
Query: 343 ttgcaccagttgatcaactggt 364
||||||||| ||||||||||||
Sbjct: 22406041 ttgcaccagatgatcaactggt 22406062
Score = 52.0 bits (26), Expect = 0.002
Identities = 110/138 (79%)
Strand = Plus / Plus
Query: 129 aatttttagcggggcacttataatattgatcgcaatggcttcgagatgggcgaccatcaa 188
||||||||| ||||| | |||||| ||| |||||||| ||||||||| | ||| ||
Sbjct: 22405734 aatttttagtggggccttgataatactgactgcaatggcatcgagatggatggccacaaa 22405793
Query: 189 taccagcaccttttggttgtatcttaatcgagcaaacaaacaagcccctaaatcctccaa 248
|| | || ||||||| | ||||||| ||||||||| |||| | ||| ||| ||| ||
Sbjct: 22405794 taataacaacttttggctatatcttactcgagcaaataaacgggatcctcaattctctaa 22405853
Query: 249 gctattttttgttcaggt 266
||||||||||||||||||
Sbjct: 22405854 gctattttttgttcaggt 22405871
>dbj|AP003999.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1115_A05
Length = 113326
Score = 174 bits (88), Expect = 2e-40
Identities = 163/188 (86%)
Strand = Plus / Plus
Query: 476 gctatgaagcggttttctatagtgcttttgcgctggtactcatgggatggatatttcttg 535
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | |
Sbjct: 63406 gctatgaagcggttttctatagtgcttttgcaatggtacttatgggatggatatttgtgg 63465
Query: 536 aatctgccaacttgtattgctctgaaggaagcaattctgcgtgctacagtagccttgtgg 595
|||||||||||||||||||||| ||| || |||||| || |||||| ||||||
Sbjct: 63466 aatctgccaacttgtattgctcagaacaaaatggttctgcacgccgtagtagcattgtgg 63525
Query: 596 atggatcagtttatggctatgacgaaagatgcttacaactatctgatttacgaatccctc 655
| || ||| ||| |||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 63526 agggctcaattttcggctatgatgaaagatgcttacaactatctgatctacgaatccctc 63585
Query: 656 tgttattt 663
||||||||
Sbjct: 63586 tgttattt 63593
Score = 89.7 bits (45), Expect = 1e-14
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 65 catgctggttcctgtctgtattcacattgatgccagctgaaattccagagaataacaact 124
||||||||||||| ||| ||||||||||||||||||||||||||||||| || |||||||
Sbjct: 61698 catgctggttcctatctttattcacattgatgccagctgaaattccagaaaacaacaact 61757
Query: 125 t 125
|
Sbjct: 61758 t 61758
Score = 81.8 bits (41), Expect = 3e-12
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 373 ggttttgcgatggtgctaccgctcttttcaccttgtagcgttctatcccgtcttacatct 432
|||||||| ||||||||||| || |||||||| | || |||||||| || |||||||||
Sbjct: 63206 ggttttgctatggtgctaccacttttttcaccatcaagtgttctatctcgccttacatct 63265
Query: 433 atcttcttgggttttgccccttcgtttctgctgctttctattggctatg 481
||||||||||| ||||| ||| | ||||| |||| |||||||| ||||
Sbjct: 63266 atcttcttgggatttgctcctccatttctattgctctctattgggtatg 63314
Score = 67.9 bits (34), Expect = 4e-08
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 283 tcttcaattatggtgtggttaactacatctcatcggtctcagcacaaagaactgcaccca 342
||||| || ||||||||| || | || || || ||||||||| ||||| | |||||||||
Sbjct: 62200 tcttctataatggtgtggatatcgacctcgcaccggtctcagaacaaacagctgcaccca 62259
Query: 343 ttgcaccagttgatcaactggt 364
||||||||| ||||||||||||
Sbjct: 62260 ttgcaccagatgatcaactggt 62281
Score = 52.0 bits (26), Expect = 0.002
Identities = 110/138 (79%)
Strand = Plus / Plus
Query: 129 aatttttagcggggcacttataatattgatcgcaatggcttcgagatgggcgaccatcaa 188
||||||||| ||||| | |||||| ||| |||||||| ||||||||| | ||| ||
Sbjct: 61953 aatttttagtggggccttgataatactgactgcaatggcatcgagatggatggccacaaa 62012
Query: 189 taccagcaccttttggttgtatcttaatcgagcaaacaaacaagcccctaaatcctccaa 248
|| | || ||||||| | ||||||| ||||||||| |||| | ||| ||| ||| ||
Sbjct: 62013 taataacaacttttggctatatcttactcgagcaaataaacgggatcctcaattctctaa 62072
Query: 249 gctattttttgttcaggt 266
||||||||||||||||||
Sbjct: 62073 gctattttttgttcaggt 62090
>emb|AL138795.21| Human DNA sequence from clone RP4-790G17 on chromosome 1q21.1-21.3
Contains the ANP32E gene for acidic (leucine-rich)
nuclear phosphoprotein 32 family, member E, the CA14 gene
for carbonic anhydrase XIV, the gene for a likely
ortholog of C. elegans anterior pharynx defective 1A
(APH-1A), the gene for a novel protein (FLJ23221), a
novel gene and the MRPS21 gene for mitochondrial
ribosomal protein S21, complete sequence
Length = 132823
Score = 40.1 bits (20), Expect = 9.2
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 87 cacattgatgccagctgaaa 106
||||||||||||||||||||
Sbjct: 7498 cacattgatgccagctgaaa 7479
>gb|AC132228.3| Mus musculus BAC clone RP24-480G11 from 6, complete sequence
Length = 180203
Score = 40.1 bits (20), Expect = 9.2
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 433 atcttcttgggttttgcccc 452
||||||||||||||||||||
Sbjct: 156212 atcttcttgggttttgcccc 156231
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,750,202
Number of Sequences: 3902068
Number of extensions: 6750202
Number of successful extensions: 124403
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124240
Number of HSP's gapped (non-prelim): 163
length of query: 673
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 650
effective length of database: 17,143,297,704
effective search space: 11143143507600
effective search space used: 11143143507600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)