>SEC71_SCHPO (Q9UT02) Protein transport protein sec71|
          Length = 1811

 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 7/212 (3%)
 Frame = +1

Query: 13   ALQLVVDLFVKFYDTVHPLLKKVLSLLTSFIKRPHQSLAGIGIAAFVRLMSSAGSVFVDE 192
            AL+  ++L    ++ +H LL K L+LL   I + +  ++ +G++ F + +    + F D 
Sbjct: 1488 ALKAFIELIKNLFERLHFLLPKALNLLEKCICQENSMISKVGLSCFSQFVLKNKNQFKDV 1547

Query: 193  KWLEVVLSLKEVTTETLPDFSYIASGAYLENVPIENGGSS--DKREDESQP---SEDGTE 357
             W E++ S+ ++   TLP         Y    P  N  SS  D +E+  +P   S   ++
Sbjct: 1548 DWDEIINSINQLLQMTLP-IELRDPSLY----PQVNSDSSLEDVKENSFRPHEISRFNSQ 1602

Query: 358  ETSRSRNLYFAIADAKCRAAVQLLLIQAVMEIYNM--YRAQLSAQNTVILFEALHTVATH 531
               +S+  +      KC   +QLL++  + E+++       +  +  V L + L      
Sbjct: 1603 SVFKSKKHHLKSIVVKC--TLQLLMLNCLWELFHSDNMLTNIPKRKMVKLLDILKQSWEF 1660

Query: 532  AHKINSDNDLRTKLQELGSMTQMQDPPLLRLE 627
            A   NSD ++R K+   G +  M  P LL  E
Sbjct: 1661 AESFNSDFEIRAKILSSGIVEHM--PNLLSQE 1690

>BIG2_HUMAN (Q9Y6D5) Brefeldin A-inhibited guanine nucleotide-exchange protein 2|
            (Brefeldin A-inhibited GEP 2)
          Length = 1785

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 17/221 (7%)
 Frame = +1

Query: 13   ALQLVVDLFVKFYDTVHP-LLKKVLSLLTSFIKRPHQSLAGIGIAAFVRLMSSAGSVFVD 189
            AL  + D+F +FY+ ++  LL  V + L   +K+ ++ LA  G      L+ S G  F  
Sbjct: 1405 ALYAICDVFTQFYEALNEVLLSDVFAQLQWCVKQDNEQLARSGTNCLENLVISNGEKFSP 1464

Query: 190  EKWLEVVLSLKEVTTETLP---------DFSYIASGAYLE-NVPIENGGSSDKREDE--- 330
            E W E    + ++   T+P              +S  +L+ ++  ++  S DK   E   
Sbjct: 1465 EVWDETCNCMLDIFKTTIPHVLLTWRPVGMEEDSSEKHLDVDLDRQSLSSIDKNPSERGQ 1524

Query: 331  ---SQPSEDGTEETSRSRNLYFAIADAKCRAAVQLLLIQAVMEIYNMYRAQLSAQNTVIL 501
               S P++D  +    +    FA    KC   VQL LIQ +  I   Y A    +     
Sbjct: 1525 SQLSNPTDDSWKGRPYANQKLFASLLIKC--VVQLELIQTIDNIV-FYPATSKKE----- 1576

Query: 502  FEALHTVATHAHKINSDNDLRTKLQELGSMTQMQDPPLLRL 624
             +A H VA  A +   D D+  + ++ G    M    L +L
Sbjct: 1577 -DAEHMVA--AQQDTLDADIHIETEDQGMYKYMSSQHLFKL 1614

>KDUI_CAUCR (Q9A873) 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC|
           5.3.1.17) (5-keto-4-deoxyuronate isomerase) (DKI
           isomerase)
          Length = 279

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
 Frame = +1

Query: 100 FIKRPHQSLAGIGIAAFVRLMSSAGSVFVDEKWLEVVLSLKEVTTETLPDFSYIASGAYL 279
           F++R    +  +G       +       V    L V +  K+VT E +      A+  YL
Sbjct: 74  FLERRELGVINVGDTTGKITVDGVAYEIVPRDGLYVTMGAKDVTFEGVDG----AARFYL 129

Query: 280 ENVPIENGGSSDKRE-DESQPSEDGTEETSRSRNLYFAIADAKCRAAVQLLLIQAVME 450
            ++P      + K    ++ P E G  ETS  R +Y  I    C++A QLLL   V++
Sbjct: 130 VSLPAHAAFETKKLAFADAIPLERGALETSNERTIYQYIVPTTCKSA-QLLLGMTVLK 186

>ATG2_NEUCR (Q871L5) Autophagy-related protein 2|
          Length = 2011

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
 Frame = +1

Query: 217  LKEVTTETLPDFSYIASGAYLENVPIENGGSSDKREDE----SQPSEDGTEETSRSRNLY 384
            L ++  E   D   + S A L+  P+ +   SD    E    S+P ++ T   +  +NLY
Sbjct: 1388 LGDIEVENTND-GMLVSTANLDVPPVSSQSESDLDIQENYFSSEPVKNTTLRWNSRKNLY 1446

Query: 385  FAIADAKCRAAVQLLLIQAVMEIYNMYRAQLSAQNTVILFEALHTVATHAHKINSDNDLR 564
               +DA+   +  ++ ++ V  I+N+Y      +   I+ +A+  V   A++  +  D  
Sbjct: 1447 DQSSDAQVFKSPLVICVRDVHVIWNLYDGYDWVRTREIITKAVQDVEAKAYERKARADRH 1506

Query: 565  T 567
            T
Sbjct: 1507 T 1507

>BACA_BACLI (O68006) Bacitracin synthetase 1 (BA1) [Includes: ATP-dependent|
            isoleucine adenylase (IleA) (Isoleucine activase);
            ATP-dependent cysteine adenylase (CysA) (Cysteine
            activase); ATP-dependent leucine adenylase (LeuA)
            (Leucine activase); ATP-depe
          Length = 5255

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 211  LSLKEVTTETLPDFSYIASGAYLENVPIENGGSSDKREDESQPSEDGTEETSR 369
            L +KE   +TLPD+   A    +E +P+   G  DKR       +   +E  R
Sbjct: 1523 LDVKEFLQKTLPDYMIPAKFVQIEEIPLTVNGKVDKRTLHDLAEQHTADEGQR 1575

>CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-channel|
           [Contains: Glutamic acid-rich protein (GARP);
           Cyclic-nucleotide-gated cation channel 4 (CNG channel 4)
           (CNG-4) (Cyclic nucleotide-gated cation channel
           modulatory subunit)]
          Length = 1394

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +1

Query: 184 VDEKWLEVVLSLKEVTTETLPDFSYIA-----SGAYLENVPIENGGSSDKREDESQPSED 348
           VD  W E     +E +T T P  S  A      G  +E  P E     +++EDE +  ED
Sbjct: 309 VDPHWEED--EHQEGSTSTSPRTSEAAPADEEKGKVVEQTPRELPRIQEEKEDEEEEKED 366

Query: 349 GTEETSRSR 375
           G EE    R
Sbjct: 367 GEEEEEEGR 375

>UB2Q2_MOUSE (Q8K2Z8) Ubiquitin-conjugating enzyme E2 Q2 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase Q2) (Ubiquitin carrier protein
           Q2)
          Length = 378

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 15/174 (8%)
 Frame = +1

Query: 202 EVVLSLKEVTTETLPDFSYIASGAYLENVPIENGGSSDKR-EDESQPSEDGTEETSRSRN 378
           E V S +E   E   D   +      E  PI    S D+  E E+    +   +T R  +
Sbjct: 138 EEVTSEEEEEEEMAEDIEDLDHYEMKEEEPINGKKSEDEGIEKENLAILEKIRKTQRQDH 197

Query: 379 LYFAIADAKCRAAVQLLLIQAVMEIYNMYRAQLSAQNTVILFEALHTVATHAHKINSDND 558
           L  A++ +         L++ + ++Y     +    +  ++ ++L+      HK++SD+ 
Sbjct: 198 LNGAVSGS---VQASDRLMKELRDVYRSQSYKAGIYSVELINDSLYDWHVKLHKVDSDSP 254

Query: 559 LRTKLQELGSMTQMQ--------------DPPLLRLENGVVSVVPHYPPEYILG 678
           L + LQ L     ++              DPP +R+      V+P     Y+LG
Sbjct: 255 LHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRV------VLPVLSGGYVLG 302

>LOXL1_MOUSE (P97873) Lysyl oxidase homolog 1 precursor (EC 1.4.3.-) (Lysyl|
           oxidase-like protein 1) (Lysyl oxidase 2)
          Length = 607

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
 Frame = -1

Query: 466 CTCYISPSQPESIGVGQQLGTWHQ--QWQNIG---SLI*RFLQYHPLMVEIRXXXXXXXX 302
           C C +   Q    G G   G W Q  QW+N G   SL+    +Y P              
Sbjct: 18  CLCVLVHGQQAQPGQGSDPGRWRQLIQWENNGQVYSLLNSGSEYVP-------AGPQRGE 70

Query: 301 XXXLVHFQGKPQTQYKRSQ 245
               V   G PQT  +RSQ
Sbjct: 71  TSSRVLLAGAPQTSQRRSQ 89

>Y389_MYCGE (P47629) Hypothetical protein MG389|
          Length = 127

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = +2

Query: 281 KMYQ*KMEALQIREKTNLNHQRMVLKKPLDQGTYILPLLMPSAEL 415
           ++Y+ K+   +I  + N N  ++ L   L+QG Y + +++PS +L
Sbjct: 78  RLYKKKISTSEISSELNKNLVKVDLSVTLEQGWYNITIMLPSKDL 122

>RLA0_DROME (P19889) 60S acidic ribosomal protein P0 (DNA-(apurinic or|
           apyrimidinic site) lyase) (EC 4.2.99.18)
           (Apurinic-apyrimidinic endonuclease)
          Length = 317

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
 Frame = +1

Query: 31  DLFVKFYDTVHPLLKKVLSLLTSFIKRPHQSLAGIGIAAFVRLMSSAGSVFVDEKWLEVV 210
           DL  KF   V  L    LS+    I     S+A      F  L++ A +  V+       
Sbjct: 210 DLRAKFQQGVANLAAVCLSVGYPTIASAPHSIAN----GFKNLLAIAATTEVE------- 258

Query: 211 LSLKEVTT--ETLPDFSYIASGAYLENVPIENGGSSDKREDESQPSEDGTEE 360
              KE TT  E + D S  A+ A     P   GG+++K+E+  +P  +  EE
Sbjct: 259 --FKEATTIKEYIKDPSKFAAAASASAAPAA-GGATEKKEEAKKPESESEEE 307

>MD1L1_CRIGR (Q80YF0) Mitotic spindle assembly checkpoint protein MAD1 (Mitotic|
           arrest deficient-like protein 1) (MAD1-like 1)
          Length = 717

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
 Frame = +1

Query: 322 EDESQPSEDGTEETSRSRNLYFAIADAKCRAAVQLLL----IQAVMEIYN--MYRAQLSA 483
           +DE +       E  + R ++ A+A    +  V L      ++A++  Y+  + +A+ SA
Sbjct: 370 QDEVRQVSAQLLEERKKREIHEALARRLQKRIVLLTKERDGMRAILGSYDSELTQAEYSA 429

Query: 484 QNTVILFEALHTVA-THAHKINSDNDLRTKLQELGSMTQMQD 606
           Q T  ++EA   V   HAH    +  L   L+ELG   Q  D
Sbjct: 430 QLTQRMWEAEDMVQKVHAHSSEMETQLSQALEELGVQKQRAD 471

>YJY5_YEAST (P47090) Hypothetical 58.1 kDa protein in SPC1-ILV3 intergenic|
           region
          Length = 510

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 29/135 (21%), Positives = 55/135 (40%)
 Frame = +1

Query: 247 DFSYIASGAYLENVPIENGGSSDKREDESQPSEDGTEETSRSRNLYFAIADAKCRAAVQL 426
           D S +   A  + VP  +G ++D  +D    SED       S + +        +   + 
Sbjct: 30  DLSSVVGDAVSQGVPDMDGQTTDSSKDPEPNSEDKKAFPPSSGSFF----SPNLQGQRKK 85

Query: 427 LLIQAVMEIYNMYRAQLSAQNTVILFEALHTVATHAHKINSDNDLRTKLQELGSMTQMQD 606
           +L++ V    N   A +     V+ + AL+  + + HK+               +  +Q+
Sbjct: 86  VLLKFVFT--NCLLAIICFTMFVLFWGALYDTSKYLHKVKL-------------LVVIQE 130

Query: 607 PPLLRLENGVVSVVP 651
           PP++ L+N    VVP
Sbjct: 131 PPVVILDNNSSMVVP 145

>GCN1_YEAST (P33892) Translational activator GCN1|
          Length = 2672

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
 Frame = +1

Query: 1    SARGALQLVVD---LFVKFYDTVHPLLKKVLSLLTS 99
            S +GAL+L +D   L V   + +HPLL++++SLL S
Sbjct: 2077 STKGALELALDRVFLSVNDDEGLHPLLQQIMSLLKS 2112


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,566,722
Number of Sequences: 219361
Number of extensions: 2009428
Number of successful extensions: 6060
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6056
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)