ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal9e14 |
|---|---|
| Clone Library Name | barley_pub |
>DNAJ3_ARATH (Q94AW8) Chaperone protein dnaJ 3 (AtJ3) (AtDjA3)| Length = 420 Score = 33.9 bits (76), Expect = 0.38 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 9/61 (14%) Frame = -3 Query: 504 DSWKEVSEEGRMAFDKLFSRGKL--------PQSFSPPQAEGLK-VVPRGEQDEATTVTV 352 DS+K +S+EG + + F +GKL P S SP Q + L+ V+P+ + + + + Sbjct: 312 DSYKAISDEGMPIYQRPFMKGKLYIHFTVEFPDSLSPDQTKALEAVLPKPSTAQLSDMEI 371 Query: 351 D 349 D Sbjct: 372 D 372
>DNAJ2_ARATH (P42825) Chaperone protein dnaJ 2 (AtDjA2)| Length = 419 Score = 33.1 bits (74), Expect = 0.64 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 9/61 (14%) Frame = -3 Query: 504 DSWKEVSEEGRMAFDKLFSRGKL--------PQSFSPPQAEGLK-VVPRGEQDEATTVTV 352 DS+K +S+EG + + F +GKL P+S SP Q + ++ V+P+ + + + + Sbjct: 313 DSYKAISDEGMPIYQRPFMKGKLYIHFTVEFPESLSPDQTKAIEAVLPKPTKAAISDMEI 372 Query: 351 D 349 D Sbjct: 373 D 373
>DNJH1_ALLPO (Q03363) DnaJ protein homolog 1 (DNAJ-1) (Fragment)| Length = 397 Score = 33.1 bits (74), Expect = 0.64 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 9/61 (14%) Frame = -3 Query: 504 DSWKEVSEEGRMAFDKLFSRGKL--------PQSFSPPQAEGLK-VVPRGEQDEATTVTV 352 D +K +++EG + + F RGKL P S +P Q + ++ V+PR + T + + Sbjct: 291 DQFKAINDEGMPMYQRPFMRGKLYIQFLVDFPDSLTPDQCKVIESVLPRSASSQLTDMEI 350 Query: 351 D 349 D Sbjct: 351 D 351
>ARHGC_HUMAN (Q9NZN5) Rho guanine nucleotide exchange factor 12| (Leukemia-associated RhoGEF) Length = 1544 Score = 31.6 bits (70), Expect = 1.9 Identities = 17/42 (40%), Positives = 23/42 (54%) Frame = +2 Query: 449 LNSLSKAIRPSSETSFHESFVLEMFLNLRWFMSPAEELLQHA 574 LN KA+R +ETS + ++ L WF P EE L+HA Sbjct: 845 LNEQMKAVRKRNETSVIDQIGEDL---LTWFSGPGEEKLKHA 883
>UBP20_HUMAN (Q9Y2K6) Ubiquitin carboxyl-terminal hydrolase 20 (EC 3.1.2.15)| (Ubiquitin thioesterase 20) (Ubiquitin-specific-processing protease 20) (Deubiquitinating enzyme 20) Length = 913 Score = 31.2 bits (69), Expect = 2.4 Identities = 19/49 (38%), Positives = 24/49 (48%) Frame = -3 Query: 495 KEVSEEGRMAFDKLFSRGKLPQSFSPPQAEGLKVVPRGEQDEATTVTVD 349 KEV E R+A L S K + SPP + LK VP DE + + D Sbjct: 88 KEVFLEQRLAAPLLGSSSKFSEQDSPPPSHPLKAVPIAVADEGESESED 136
>DNJH2_ALLPO (P42824) DnaJ protein homolog 2| Length = 418 Score = 30.8 bits (68), Expect = 3.2 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 9/61 (14%) Frame = -3 Query: 504 DSWKEVSEEGRMAFDKLFSRGKL--------PQSFSPPQAEGLK-VVPRGEQDEATTVTV 352 D +K +++EG + + F RGKL P S +P Q + L+ V+P T + + Sbjct: 312 DQFKGINDEGMPMYQRPFMRGKLYIHFSVDFPDSLTPDQCKALESVLPSRNASRLTDMEI 371 Query: 351 D 349 D Sbjct: 372 D 372
>ARHGC_MOUSE (Q8R4H2) Rho guanine nucleotide exchange factor 12| (Leukemia-associated RhoGEF) Length = 1543 Score = 30.8 bits (68), Expect = 3.2 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +2 Query: 449 LNSLSKAIRPSSETSFHESFVLEMFLNLRWFMSPAEELLQHA 574 LN KA+R +ETS + ++ + WF P EE L+HA Sbjct: 845 LNEQMKAVRKRNETSVIDHIGEDLLI---WFSGPGEEKLKHA 883
>MUTS_BUCAI (P57504) DNA mismatch repair protein mutS| Length = 802 Score = 30.4 bits (67), Expect = 4.2 Identities = 9/28 (32%), Positives = 19/28 (67%) Frame = +2 Query: 239 VKANPFGTNLVSSRHPILLCFHRAPLVR 322 + + +G +L+ SRHP++ CF + P ++ Sbjct: 574 IMSEKYGISLLESRHPVVECFLKTPFIK 601
>YL278_YEAST (Q05854) Putative transcriptional regulatory protein YLR278C| Length = 1341 Score = 29.6 bits (65), Expect = 7.1 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Frame = -3 Query: 591 NDKTQQACCSNSSAGDMNHRRFRNISSTNDSWKEVSEEGRM--AFDKLFSRGK 439 ND+ +A S + D N N+S++ND K +S G M A ++F +G+ Sbjct: 763 NDEANKAISSGDTLHDSNSANAANLSNSND--KNISHNGGMPPAVARIFGKGQ 813
>UL24_EHV1V (Q6S6T4) Protein UL24 homolog| Length = 272 Score = 29.3 bits (64), Expect = 9.3 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = -3 Query: 372 EATTVTVDLNKSAAASNLTRGARWKQRRIGCRLLTRLVPKG 250 E T N + A+ NL R +Q CRLL R +P G Sbjct: 98 ELKTCRFSKNMNTASKNLQRKGGMRQLHDSCRLLARTLPPG 138
>UL24_EHV1B (P28927) Protein UL24 homolog| Length = 272 Score = 29.3 bits (64), Expect = 9.3 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = -3 Query: 372 EATTVTVDLNKSAAASNLTRGARWKQRRIGCRLLTRLVPKG 250 E T N + A+ NL R +Q CRLL R +P G Sbjct: 98 ELKTCRFSKNMNTASKNLQRKGGMRQLHDSCRLLARTLPPG 138
>Y741_CHLMU (Q9PJT6) Hypothetical protein TC0741 precursor| Length = 1007 Score = 29.3 bits (64), Expect = 9.3 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +1 Query: 259 YQPRQQPAPYSPLLPPSTSCKV*SCST-LVEVDRHRSSFILLPSGN 393 Y P + + + L P+T K+ S LV +D RSSFI +P+GN Sbjct: 226 YSPTDKSSLLAFLSNPNTKAKMLEHSGHLVFIDTTRSSFIFVPNGN 271
>GID_STAS1 (Q49X36) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gid Length = 435 Score = 29.3 bits (64), Expect = 9.3 Identities = 21/67 (31%), Positives = 31/67 (46%) Frame = -3 Query: 519 ISSTNDSWKEVSEEGRMAFDKLFSRGKLPQSFSPPQAEGLKVVPRGEQDEATTVTVDLNK 340 ++ N+ KE EG M F+ + RG+ F P + GL+ GE+ A V L + Sbjct: 210 VAPVNEFEKEKYFEGCMPFEVMAERGRKTLLFGPMKPVGLEDPKTGERPYA---VVQLRQ 266 Query: 339 SAAASNL 319 AA L Sbjct: 267 DDAAGTL 273
>GID_STAHJ (Q4L5V3) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gid Length = 435 Score = 29.3 bits (64), Expect = 9.3 Identities = 21/67 (31%), Positives = 32/67 (47%) Frame = -3 Query: 519 ISSTNDSWKEVSEEGRMAFDKLFSRGKLPQSFSPPQAEGLKVVPRGEQDEATTVTVDLNK 340 ++ TN+ KE EG M F+ + RG+ F P + GL+ G++ A V L + Sbjct: 210 VAPTNEFEKEKYFEGCMPFEVMAERGRKTLLFGPMKPVGLEDPKTGKRPFA---VVQLRQ 266 Query: 339 SAAASNL 319 AA L Sbjct: 267 DDAAGTL 273
>ATM_YEAST (P38110) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase TEL1) (Telomere length regulation protein 1) (ATM homolog) Length = 2787 Score = 29.3 bits (64), Expect = 9.3 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +1 Query: 391 NHLQSFCLWRRKALGKLSSTEQFIESHTTLLGNFL 495 ++L + C W ++A+G+ SS + +E T +LG L Sbjct: 855 SYLGTVCQWLKQAIGEKSSYNKILEEFTEVLGEKL 889 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,530,731 Number of Sequences: 219361 Number of extensions: 1862103 Number of successful extensions: 4701 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4538 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4697 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
