>LAT_RAT (O70601) Linker for activation of T-cells family member 1 (36 kDa|
           phospho-tyrosine adapter protein) (pp36) (p36-38)
          Length = 241

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 20/49 (40%), Positives = 22/49 (44%)
 Frame = -2

Query: 518 LLALVVRAMNKPAEYDSDDEIIGTARSTSIRQPLIHSQNAPATGVPVPT 372
           L AL VR    PA YDS        RS  I+ P I     PAT  P+ T
Sbjct: 23  LAALCVRCRELPASYDSASTESLYPRSILIKPPQITVPRTPATSYPLVT 71

>IKKA_MOUSE (Q60680) Inhibitor of nuclear factor kappa-B kinase alpha subunit|
           (EC 2.7.11.10) (I kappa-B kinase alpha) (IkBKA)
           (IKK-alpha) (IKK-A) (IkappaB kinase) (I-kappa-B kinase
           1) (IKK1) (Conserved helix-loop-helix ubiquitous kinase)
           (Nuclear factor N
          Length = 745

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 103 SLP*CSSYLLSFEQFHAPVIFLERVWQSISHYIS 2
           SL  C +Y++   +   P+I L +VW    HY+S
Sbjct: 402 SLSDCVNYIVQDSKIQLPIIQLRKVWAEAVHYVS 435

>IKKA_HUMAN (O15111) Inhibitor of nuclear factor kappa-B kinase alpha subunit|
           (EC 2.7.11.10) (I kappa-B kinase alpha) (IkBKA)
           (IKK-alpha) (IKK-A) (IkappaB kinase) (I-kappa-B kinase
           1) (IKK1) (Conserved helix-loop-helix ubiquitous kinase)
           (Nuclear factor N
          Length = 745

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 103 SLP*CSSYLLSFEQFHAPVIFLERVWQSISHYIS 2
           SL  C +Y++   +   P+I L +VW    HY+S
Sbjct: 402 SLSDCVNYIVQDSKIQLPIIQLRKVWAEAVHYVS 435

>NU4C_PSINU (Q8WHX8) NAD(P)H-quinone oxidoreductase chain 4, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain 4)
           (NADH-plastoquinone oxidoreductase chain 4)
          Length = 498

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 582 KTGKIARWVALGVVIFQVLLFLVSSCCQ 499
           K  K+ RW  LG+   + LL   + CCQ
Sbjct: 27  KGNKVVRWYTLGICALEFLLITFTFCCQ 54

>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain|
           collagen) (LC collagen)
          Length = 2944

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 326 REKYGLDTSQFTYNPSDATRYQQNGAPPAEE 234
           R + GL+  Q    PSD TRYQ +G  P  E
Sbjct: 449 RRETGLEPPQKVVLPSDVTRYQLDGLQPGTE 479

>GLGA1_NITOC (Q3JEW3) Glycogen synthase 1 (EC 2.4.1.21) (Starch [bacterial|
           glycogen] synthase 1)
          Length = 487

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 72  LLNNSMHL*FSWNEYGNQYLIIFH 1
           L+ N M   FSWN  G  YL I+H
Sbjct: 459 LMENGMRYDFSWNHPGQHYLNIYH 482


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,515,122
Number of Sequences: 219361
Number of extensions: 2042945
Number of successful extensions: 5070
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5069
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)