ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3m01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1tpg|BK004880.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-gr... 319 5e-84
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 319 5e-84
3dbj|AP005180.4| Oryza sativa (japonica cultivar-group) genomic D... 319 5e-84
4dbj|AK066400.1| Oryza sativa (japonica cultivar-group) cDNA clon... 319 5e-84
5gb|AY110199.1| Zea mays CL5295_1 mRNA sequence 123 6e-25
6gb|AY109917.1| Zea mays CL13558_2 mRNA sequence 62 2e-06
7gb|AY107970.1| Zea mays PCO085337 mRNA sequence 62 2e-06
8gb|AY107388.1| Zea mays PCO080442 mRNA sequence 48 0.030
9gb|AC079830.9| Oryza sativa chromosome 3 BAC OSJNBb0009F04 genom... 46 0.12
10ref|XM_469253.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.12
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.12
12gb|AC090683.7| Oryza sativa chromosome 3 BAC OSJNBa0035I24 genom... 46 0.12
13tpg|BK004862.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-gr... 46 0.12
14tpg|BK004878.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-gr... 46 0.12
15dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
17dbj|AK067566.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
18dbj|AK058659.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
19gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.12
20emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa... 46 0.12
21ref|XM_813899.1| Trypanosoma cruzi strain CL Brener ribosomal pr... 44 0.46
22emb|CR450753.6| Zebrafish DNA sequence from clone DKEY-225F3 in ... 44 0.46
23emb|AL451103.7| Human DNA sequence from clone RP11-172M3 on chro... 42 1.8
24gb|AC063962.11| Homo sapiens chromosome 10 clone RP11-222G7, com... 42 1.8
25gb|AC011535.7|AC011535 Homo sapiens chromosome 19 clone LLNLR-24... 42 1.8
26gb|AY581210.1| Danio rerio bHLH transcription factor (atoh1.2) m... 40 7.2
27gb|AC114908.9| Mus musculus chromosome 3, clone RP24-173L8, comp... 40 7.2
28gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, comp... 40 7.2
29gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast... 40 7.2
30gb|AC073347.3| Homo sapiens BAC clone RP11-775L16 from 7, comple... 40 7.2
31gb|AC102626.9| Mus musculus chromosome 12, clone RP23-456E21, co... 40 7.2
32gb|AC142291.1| Pan troglodytes BAC clone RP43-184P18 from 7, com... 40 7.2
33emb|AL158052.10| Human DNA sequence from clone RP11-570J20 on ch... 40 7.2
34emb|CR293521.11| Zebrafish DNA sequence from clone CH211-152F22 ... 40 7.2
35gb|AC100812.2| Homo sapiens chromosome 8, clone CTD-2532N20, com... 40 7.2
36gb|AC109037.6| Rattus norvegicus 18 BAC CH230-178G23 (Children's... 40 7.2
37gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 7.2
38gb|AC090714.9| Oryza sativa chromosome 3 BAC OSJNBb0031G04 genom... 40 7.2
39gb|AC073945.34| Mus musculus strain C57BL/6J chromosome 9 clone ... 40 7.2
40gb|AY736009.1| Eupatorium capillifolium rps4-trnT intergenic spa... 40 7.2
41gb|AY736008.1| Eupatorium hyssopifolium rps4-trnT intergenic spa... 40 7.2
42gb|AY736007.1| Eupatorium rotundifolium rps4-trnT intergenic spa... 40 7.2
43dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome 40 7.2
44gb|AY495827.1| Oryctolagus cuniculus clone 179L1 kappa 1 light c... 40 7.2
45gb|AC161259.2| Mus musculus BAC clone RP23-465D18 from chromosom... 40 7.2 
>tpg|BK004880.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group)
            growth-regulating factor 11 (GRF11) gene, complete cds
          Length = 6000

 Score =  319 bits (161), Expect = 5e-84
 Identities = 422/505 (83%), Gaps = 8/505 (1%)
 Strand = Plus / Minus

                                                                        
Query: 33   aagctaattcaaactatacacctaaactgaaaaattcagtgg-agctaaacatggggttt 91
            ||||||| ||||||||||||||||||||||||| |||||||  |||||||     | |||
Sbjct: 4023 aagctaaatcaaactatacacctaaactgaaaatttcagtgacagctaaatgaaagtttt 3964

                                                                        
Query: 92   tgtggcttcttccgacaagacattttgcttgcttaatgaggtcatagctagacaacacta 151
            ||||||||||| | ||| |||| ||| ||||||| ||||||| |||||||||| | ||||
Sbjct: 3963 tgtggcttctttccaca-gacacttttcttgcttgatgaggttatagctagaccagacta 3905

                                                                        
Query: 152  aagtcttttgaggattacaataacg---gaactctaatttccaaggcggttatgcgcttc 208
             |||||||| |||||||||||||     ||||||||||| |||   | ||||||| ||| 
Sbjct: 3904 cagtcttttcaggattacaataagaagcgaactctaattgccagcacagttatgctcttt 3845

                                                                        
Query: 209  tttcagcttccaaatgctgcattatcaatcatgtaaactccacatcagctggtgctgcta 268
             | ||||| | |||||||||||   |||||||||| |||||||| ||||||||||||| |
Sbjct: 3844 atgcagctcctaaatgctgcat---caatcatgtagactccacagcagctggtgctgcca 3788

                                                                        
Query: 269  ctgcaagcttcttgctactttaactcttgtcgtcagtcttcttccctccttcagtgactt 328
            |||||||||||||||||||| | |||||||| ||||||||||| || ||||| ||| | |
Sbjct: 3787 ctgcaagcttcttgctacttgagctcttgtcatcagtcttcttgccaccttcggtggcct 3728

                                                                        
Query: 329  tgccagatgacgattttgaccctgatgcggaatcaggctcatcatcctcaacaataacct 388
            |||||||||  | ||| |||||||| |  ||||||||||| |||||||| |||| || ||
Sbjct: 3727 tgccagatgctggtttcgaccctgaggtagaatcaggctcgtcatcctcgacaacaagct 3668

                                                                        
Query: 389  gcacaggacgcttgcgaccacgatgcatatgacgttcacaatatttctcattggggatag 448
            | |||||||||||||| ||||| |||||||| ||||| |||||||||||||| |  || |
Sbjct: 3667 gtacaggacgcttgcggccacggtgcatatggcgttcgcaatatttctcatttgcaattg 3608

                                                                        
Query: 449  tttttctccagcaccgccacttttttccatcggttcgacggcaccttcctggttctggtt 508
              |||||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||
Sbjct: 3607 catttctccagcaccgccacttctttccatcagttcgccggcacctcccaggttctggtt 3548

                                     
Query: 509  ccaggctcttcccgaagtccaagca 533
            |  || |||| || |||||||||||
Sbjct: 3547 ctgggttctttccaaagtccaagca 3523
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  319 bits (161), Expect = 5e-84
 Identities = 422/505 (83%), Gaps = 8/505 (1%)
 Strand = Plus / Minus

                                                                            
Query: 33       aagctaattcaaactatacacctaaactgaaaaattcagtgg-agctaaacatggggttt 91
                ||||||| ||||||||||||||||||||||||| |||||||  |||||||     | |||
Sbjct: 16571380 aagctaaatcaaactatacacctaaactgaaaatttcagtgacagctaaatgaaagtttt 16571321

                                                                            
Query: 92       tgtggcttcttccgacaagacattttgcttgcttaatgaggtcatagctagacaacacta 151
                ||||||||||| | ||| |||| ||| ||||||| ||||||| |||||||||| | ||||
Sbjct: 16571320 tgtggcttctttccaca-gacacttttcttgcttgatgaggttatagctagaccagacta 16571262

                                                                            
Query: 152      aagtcttttgaggattacaataacg---gaactctaatttccaaggcggttatgcgcttc 208
                 |||||||| |||||||||||||     ||||||||||| |||   | ||||||| ||| 
Sbjct: 16571261 cagtcttttcaggattacaataagaagcgaactctaattgccagcacagttatgctcttt 16571202

                                                                            
Query: 209      tttcagcttccaaatgctgcattatcaatcatgtaaactccacatcagctggtgctgcta 268
                 | ||||| | |||||||||||   |||||||||| |||||||| ||||||||||||| |
Sbjct: 16571201 atgcagctcctaaatgctgcat---caatcatgtagactccacagcagctggtgctgcca 16571145

                                                                            
Query: 269      ctgcaagcttcttgctactttaactcttgtcgtcagtcttcttccctccttcagtgactt 328
                |||||||||||||||||||| | |||||||| ||||||||||| || ||||| ||| | |
Sbjct: 16571144 ctgcaagcttcttgctacttgagctcttgtcatcagtcttcttgccaccttcggtggcct 16571085

                                                                            
Query: 329      tgccagatgacgattttgaccctgatgcggaatcaggctcatcatcctcaacaataacct 388
                |||||||||  | ||| |||||||| |  ||||||||||| |||||||| |||| || ||
Sbjct: 16571084 tgccagatgctggtttcgaccctgaggtagaatcaggctcgtcatcctcgacaacaagct 16571025

                                                                            
Query: 389      gcacaggacgcttgcgaccacgatgcatatgacgttcacaatatttctcattggggatag 448
                | |||||||||||||| ||||| |||||||| ||||| |||||||||||||| |  || |
Sbjct: 16571024 gtacaggacgcttgcggccacggtgcatatggcgttcgcaatatttctcatttgcaattg 16570965

                                                                            
Query: 449      tttttctccagcaccgccacttttttccatcggttcgacggcaccttcctggttctggtt 508
                  |||||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||
Sbjct: 16570964 catttctccagcaccgccacttctttccatcagttcgccggcacctcccaggttctggtt 16570905

                                         
Query: 509      ccaggctcttcccgaagtccaagca 533
                |  || |||| || |||||||||||
Sbjct: 16570904 ctgggttctttccaaagtccaagca 16570880
to top
>dbj|AP005180.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0003B09
          Length = 161813

 Score =  319 bits (161), Expect = 5e-84
 Identities = 422/505 (83%), Gaps = 8/505 (1%)
 Strand = Plus / Minus

                                                                         
Query: 33    aagctaattcaaactatacacctaaactgaaaaattcagtgg-agctaaacatggggttt 91
             ||||||| ||||||||||||||||||||||||| |||||||  |||||||     | |||
Sbjct: 62000 aagctaaatcaaactatacacctaaactgaaaatttcagtgacagctaaatgaaagtttt 61941

                                                                         
Query: 92    tgtggcttcttccgacaagacattttgcttgcttaatgaggtcatagctagacaacacta 151
             ||||||||||| | ||| |||| ||| ||||||| ||||||| |||||||||| | ||||
Sbjct: 61940 tgtggcttctttccaca-gacacttttcttgcttgatgaggttatagctagaccagacta 61882

                                                                         
Query: 152   aagtcttttgaggattacaataacg---gaactctaatttccaaggcggttatgcgcttc 208
              |||||||| |||||||||||||     ||||||||||| |||   | ||||||| ||| 
Sbjct: 61881 cagtcttttcaggattacaataagaagcgaactctaattgccagcacagttatgctcttt 61822

                                                                         
Query: 209   tttcagcttccaaatgctgcattatcaatcatgtaaactccacatcagctggtgctgcta 268
              | ||||| | |||||||||||   |||||||||| |||||||| ||||||||||||| |
Sbjct: 61821 atgcagctcctaaatgctgcat---caatcatgtagactccacagcagctggtgctgcca 61765

                                                                         
Query: 269   ctgcaagcttcttgctactttaactcttgtcgtcagtcttcttccctccttcagtgactt 328
             |||||||||||||||||||| | |||||||| ||||||||||| || ||||| ||| | |
Sbjct: 61764 ctgcaagcttcttgctacttgagctcttgtcatcagtcttcttgccaccttcggtggcct 61705

                                                                         
Query: 329   tgccagatgacgattttgaccctgatgcggaatcaggctcatcatcctcaacaataacct 388
             |||||||||  | ||| |||||||| |  ||||||||||| |||||||| |||| || ||
Sbjct: 61704 tgccagatgctggtttcgaccctgaggtagaatcaggctcgtcatcctcgacaacaagct 61645

                                                                         
Query: 389   gcacaggacgcttgcgaccacgatgcatatgacgttcacaatatttctcattggggatag 448
             | |||||||||||||| ||||| |||||||| ||||| |||||||||||||| |  || |
Sbjct: 61644 gtacaggacgcttgcggccacggtgcatatggcgttcgcaatatttctcatttgcaattg 61585

                                                                         
Query: 449   tttttctccagcaccgccacttttttccatcggttcgacggcaccttcctggttctggtt 508
               |||||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||
Sbjct: 61584 catttctccagcaccgccacttctttccatcagttcgccggcacctcccaggttctggtt 61525

                                      
Query: 509   ccaggctcttcccgaagtccaagca 533
             |  || |||| || |||||||||||
Sbjct: 61524 ctgggttctttccaaagtccaagca 61500
to top
>dbj|AK066400.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062O07, full
            insert sequence
          Length = 1416

 Score =  319 bits (161), Expect = 5e-84
 Identities = 422/505 (83%), Gaps = 8/505 (1%)
 Strand = Plus / Minus

                                                                        
Query: 33   aagctaattcaaactatacacctaaactgaaaaattcagtgg-agctaaacatggggttt 91
            ||||||| ||||||||||||||||||||||||| |||||||  |||||||     | |||
Sbjct: 1098 aagctaaatcaaactatacacctaaactgaaaatttcagtgacagctaaatgaaagtttt 1039

                                                                        
Query: 92   tgtggcttcttccgacaagacattttgcttgcttaatgaggtcatagctagacaacacta 151
            ||||||||||| | ||| |||| ||| ||||||| ||||||| |||||||||| | ||||
Sbjct: 1038 tgtggcttctttccaca-gacacttttcttgcttgatgaggttatagctagaccagacta 980

                                                                        
Query: 152  aagtcttttgaggattacaataacg---gaactctaatttccaaggcggttatgcgcttc 208
             |||||||| |||||||||||||     ||||||||||| |||   | ||||||| ||| 
Sbjct: 979  cagtcttttcaggattacaataagaagcgaactctaattgccagcacagttatgctcttt 920

                                                                        
Query: 209  tttcagcttccaaatgctgcattatcaatcatgtaaactccacatcagctggtgctgcta 268
             | ||||| | |||||||||||   |||||||||| |||||||| ||||||||||||| |
Sbjct: 919  atgcagctcctaaatgctgcat---caatcatgtagactccacagcagctggtgctgcca 863

                                                                        
Query: 269  ctgcaagcttcttgctactttaactcttgtcgtcagtcttcttccctccttcagtgactt 328
            |||||||||||||||||||| | |||||||| ||||||||||| || ||||| ||| | |
Sbjct: 862  ctgcaagcttcttgctacttgagctcttgtcatcagtcttcttgccaccttcggtggcct 803

                                                                        
Query: 329  tgccagatgacgattttgaccctgatgcggaatcaggctcatcatcctcaacaataacct 388
            |||||||||  | ||| |||||||| |  ||||||||||| |||||||| |||| || ||
Sbjct: 802  tgccagatgctggtttcgaccctgaggtagaatcaggctcgtcatcctcgacaacaagct 743

                                                                        
Query: 389  gcacaggacgcttgcgaccacgatgcatatgacgttcacaatatttctcattggggatag 448
            | |||||||||||||| ||||| |||||||| ||||| |||||||||||||| |  || |
Sbjct: 742  gtacaggacgcttgcggccacggtgcatatggcgttcgcaatatttctcatttgcaattg 683

                                                                        
Query: 449  tttttctccagcaccgccacttttttccatcggttcgacggcaccttcctggttctggtt 508
              |||||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||
Sbjct: 682  catttctccagcaccgccacttctttccatcagttcgccggcacctcccaggttctggtt 623

                                     
Query: 509  ccaggctcttcccgaagtccaagca 533
            |  || |||| || |||||||||||
Sbjct: 622  ctgggttctttccaaagtccaagca 598
to top
>gb|AY110199.1| Zea mays CL5295_1 mRNA sequence
          Length = 592

 Score =  123 bits (62), Expect = 6e-25
 Identities = 150/180 (83%)
 Strand = Plus / Plus

                                                                       
Query: 342 ttttgaccctgatgcggaatcaggctcatcatcctcaacaataacctgcacaggacgctt 401
           |||||||||||| || ||||| ||||| || ||||| |  | |||||| |||||||||||
Sbjct: 374 ttttgaccctgaagcagaatcgggctcgtcgtcctccaggaaaacctgtacaggacgctt 433

                                                                       
Query: 402 gcgaccacgatgcatatgacgttcacaatatttctcattggggatagtttttctccagca 461
           ||| ||||||||||| |||||||| || |||||||| || ||||||||  ||||||| ||
Sbjct: 434 gcggccacgatgcatgtgacgttcgcagtatttctcgtttgggatagtgnttctccaaca 493

                                                                       
Query: 462 ccgccacttttttccatcggttcgacggcaccttcctggttctggttccaggctcttccc 521
             |||| || || ||||| ||||| || ||||| ||||||||||||||| || |||||||
Sbjct: 494 tngccatttcttaccatctgttcgccgacacctccctggttctggttccgggttcttccc 553
to top
>gb|AY109917.1| Zea mays CL13558_2 mRNA sequence
          Length = 585

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                       
Query: 385 acctgcacaggacgcttgcgaccacgatgcatatgacgttcacaatatttctcattgggg 444
           ||||| ||||||||||||||||| |||||||| || ||||| || || ||||| || || 
Sbjct: 479 acctgtacaggacgcttgcgaccgcgatgcatgtggcgttcgcagtacttctcgtttgga 538

                                  
Query: 445 atagtttttctccagcaccgcca 467
           ||||| |||||||| || |||||
Sbjct: 539 atagtgtttctccaacatcgcca 561
to top
>gb|AY107970.1| Zea mays PCO085337 mRNA sequence
          Length = 729

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                      
Query: 475 ccatcggttcgacggcaccttcctggttctggttccaggctcttcccgaagtccaagca 533
           ||||| ||||| || ||||| ||||||||||||||| || ||||||| |||||||||||
Sbjct: 716 ccatctgttcgccgacacctccctggttctggttccgggttcttcccaaagtccaagca 658
to top
>gb|AY107388.1| Zea mays PCO080442 mRNA sequence
          Length = 742

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 458 agcaccgccacttttttccatcggttcgacggcaccttcctggttctg 505
           ||||||||||||| || ||||| || || ||||| |||||||||||||
Sbjct: 91  agcaccgccacttcttgccatctgtgcggcggcatcttcctggttctg 44
to top
>gb|AC079830.9| Oryza sativa chromosome 3 BAC OSJNBb0009F04 genomic sequence, complete
             sequence
          Length = 129655

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 460   caccgccacttttttccatcggttcgacggcaccttcctggttctgg 506
             |||||||| || || ||||| ||||||||||| ||||| ||||||||
Sbjct: 37498 caccgccatttcttgccatctgttcgacggcatcttccaggttctgg 37452
to top
>ref|XM_469253.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1556

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 460 caccgccacttttttccatcggttcgacggcaccttcctggttctgg 506
           |||||||| || || ||||| ||||||||||| ||||| ||||||||
Sbjct: 671 caccgccatttcttgccatctgttcgacggcatcttccaggttctgg 625
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 460      caccgccacttttttccatcggttcgacggcaccttcctggttctgg 506
                |||||||| || || ||||| ||||||||||| ||||| ||||||||
Sbjct: 26389458 caccgccatttcttgccatctgttcgacggcatcttccaggttctgg 26389412



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 250      acatcagctggtgctgctactgca 273
                ||||| ||||||||||||||||||
Sbjct: 19966472 acatctgctggtgctgctactgca 19966495
to top
>gb|AC090683.7| Oryza sativa chromosome 3 BAC OSJNBa0035I24 genomic sequence,
            complete sequence
          Length = 134728

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                           
Query: 460  caccgccacttttttccatcggttcgacggcaccttcctggttctgg 506
            |||||||| || || ||||| ||||||||||| ||||| ||||||||
Sbjct: 1182 caccgccatttcttgccatctgttcgacggcatcttccaggttctgg 1228
to top
>tpg|BK004862.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group)
            growth-regulating factor 7 (GRF7) gene, complete cds
          Length = 6670

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                   
Query: 453  tctccagcaccgccacttttttccatcggttcgacggca 491
            |||| |||||||||| || || |||||||||||||||||
Sbjct: 3916 tctcgagcaccgccatttcttgccatcggttcgacggca 3954
to top
>tpg|BK004878.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group)
            growth-regulating factor 9 (GRF9) gene, complete cds
          Length = 5610

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 460  caccgccacttttttccatcggttcgacggcaccttcctggttctgg 506
            |||||||| || || ||||| ||||||||||| ||||| ||||||||
Sbjct: 2998 caccgccatttcttgccatctgttcgacggcatcttccaggttctgg 2952
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                       
Query: 453      tctccagcaccgccacttttttccatcggttcgacggca 491
                |||| |||||||||| || || |||||||||||||||||
Sbjct: 17958530 tctcgagcaccgccatttcttgccatcggttcgacggca 17958492
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 460      caccgccacttttttccatcggttcgacggcaccttcctggttctgg 506
                |||||||| || || ||||| ||||||||||| ||||| ||||||||
Sbjct: 26480767 caccgccatttcttgccatctgttcgacggcatcttccaggttctgg 26480721



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 250      acatcagctggtgctgctactgca 273
                ||||| ||||||||||||||||||
Sbjct: 19959500 acatctgctggtgctgctactgca 19959523
to top
>dbj|AK067566.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013113M08, full
            insert sequence
          Length = 3434

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                           
Query: 460  caccgccacttttttccatcggttcgacggcaccttcctggttctgg 506
            |||||||| || || ||||| ||||||||||| ||||| ||||||||
Sbjct: 2569 caccgccatttcttgccatctgttcgacggcatcttccaggttctgg 2615
to top
>dbj|AK058659.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F11, full
           insert sequence
          Length = 1616

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 460 caccgccacttttttccatcggttcgacggcaccttcctggttctgg 506
           |||||||| || || ||||| ||||||||||| ||||| ||||||||
Sbjct: 671 caccgccatttcttgccatctgttcgacggcatcttccaggttctgg 625
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                       
Query: 453      tctccagcaccgccacttttttccatcggttcgacggca 491
                |||| |||||||||| || || |||||||||||||||||
Sbjct: 17884849 tctcgagcaccgccatttcttgccatcggttcgacggca 17884811
to top
>emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa0041B10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 147543

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 453   tctccagcaccgccacttttttccatcggttcgacggca 491
             |||| |||||||||| || || |||||||||||||||||
Sbjct: 40026 tctcgagcaccgccatttcttgccatcggttcgacggca 40064
to top
>ref|XM_813899.1| Trypanosoma cruzi strain CL Brener ribosomal protein L15
           (Tc00.1047053506945.290) partial mRNA
          Length = 615

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 388 tgcacaggacgcttgcgaccac 409
           ||||||||||||||||||||||
Sbjct: 227 tgcacaggacgcttgcgaccac 206
to top
>emb|CR450753.6| Zebrafish DNA sequence from clone DKEY-225F3 in linkage group 22,
             complete sequence
          Length = 160631

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 266   ctactgcaagcttcttgctactttaa 291
             ||||||||| ||||||||||||||||
Sbjct: 72867 ctactgcaaacttcttgctactttaa 72892
to top
>emb|AL451103.7| Human DNA sequence from clone RP11-172M3 on chromosome Xp21.1-21.2
             Contains a CpG island, complete sequence
          Length = 175384

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 204   gcttctttcagcttccaaatgctgc 228
             |||||||||| ||||||||||||||
Sbjct: 20841 gcttctttcaacttccaaatgctgc 20817
to top
>gb|AC063962.11| Homo sapiens chromosome 10 clone RP11-222G7, complete sequence
          Length = 171818

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 255   agctggtgctgctactgcaag 275
             |||||||||||||||||||||
Sbjct: 94358 agctggtgctgctactgcaag 94338
to top
>gb|AC011535.7|AC011535 Homo sapiens chromosome 19 clone LLNLR-243C6, complete sequence
          Length = 37096

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 494   ttcctggttctggttccaggctctt 518
             ||||||||||||||||| |||||||
Sbjct: 13316 ttcctggttctggttcccggctctt 13292
to top
>gb|AY581210.1| Danio rerio bHLH transcription factor (atoh1.2) mRNA, partial cds
          Length = 492

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 229 attatcaatcatgtaaactc 248
           ||||||||||||||||||||
Sbjct: 367 attatcaatcatgtaaactc 386
to top
>gb|AC114908.9| Mus musculus chromosome 3, clone RP24-173L8, complete sequence
          Length = 145363

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    ttcaaactatacacctaaactgaa 63
             |||| |||||||||||||||||||
Sbjct: 40712 ttcacactatacacctaaactgaa 40735
to top
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome
          Length = 152772

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   tgcattatcaatcatgtaaa 245
             ||||||||||||||||||||
Sbjct: 46327 tgcattatcaatcatgtaaa 46346
to top
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome
          Length = 151104

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   tgcattatcaatcatgtaaa 245
             ||||||||||||||||||||
Sbjct: 46366 tgcattatcaatcatgtaaa 46385
to top
>gb|AC073347.3| Homo sapiens BAC clone RP11-775L16 from 7, complete sequence
          Length = 197144

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 92    tgtggcttcttccgacaagacattttgc 119
             ||||| ||||||| ||||||||||||||
Sbjct: 36935 tgtggattcttcccacaagacattttgc 36908
to top
>gb|AC102626.9| Mus musculus chromosome 12, clone RP23-456E21, complete sequence
          Length = 222905

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     accaagctaattcaaactat 49
              ||||||||||||||||||||
Sbjct: 161420 accaagctaattcaaactat 161439
to top
>gb|AC142291.1| Pan troglodytes BAC clone RP43-184P18 from 7, complete sequence
          Length = 152668

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 92    tgtggcttcttccgacaagacattttgc 119
             ||||| ||||||| ||||||||||||||
Sbjct: 46860 tgtggattcttcccacaagacattttgc 46833
to top
>emb|AL158052.10| Human DNA sequence from clone RP11-570J20 on chromosome 9q33.1-34.12
             Contains three novel genes, the 3' end of the LHX2 gene
             for LIM homeobox protein 2 and four CpG islands, complete
             sequence
          Length = 221887

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   tctttcagcttccaaatgct 226
             ||||||||||||||||||||
Sbjct: 91634 tctttcagcttccaaatgct 91653
to top
>emb|CR293521.11| Zebrafish DNA sequence from clone CH211-152F22 in linkage group 12,
             complete sequence
          Length = 152631

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   acaacactaaagtcttttga 162
             ||||||||||||||||||||
Sbjct: 42809 acaacactaaagtcttttga 42790
to top
>gb|AC100812.2| Homo sapiens chromosome 8, clone CTD-2532N20, complete sequence
          Length = 209123

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 250    acatcagctggtgctgctac 269
              ||||||||||||||||||||
Sbjct: 114826 acatcagctggtgctgctac 114845
to top
>gb|AC109037.6| Rattus norvegicus 18 BAC CH230-178G23 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 208650

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   aggaccaagctaattcaaac 46
            ||||||||||||||||||||
Sbjct: 9486 aggaccaagctaattcaaac 9467
to top
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 8       cctgcccaaggccgaaggca 27
               ||||||||||||||||||||
Sbjct: 2837460 cctgcccaaggccgaaggca 2837479
to top
>gb|AC090714.9| Oryza sativa chromosome 3 BAC OSJNBb0031G04 genomic sequence, complete
              sequence
          Length = 137297

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 250    acatcagctggtgctgctactgca 273
              ||||| ||||||||||||||||||
Sbjct: 118761 acatctgctggtgctgctactgca 118784
to top
>gb|AC073945.34| Mus musculus strain C57BL/6J chromosome 9 clone rp23-171e18, complete
              sequence
          Length = 203394

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 143    acaacactaaagtcttttgaggat 166
              ||||||||||||||||||| ||||
Sbjct: 183422 acaacactaaagtcttttgtggat 183445
to top
>gb|AY736009.1| Eupatorium capillifolium rps4-trnT intergenic spacer, partial
           sequence; tRNA-Thr (trnT) gene, complete sequence; and
           trnT-trnL intergenic spacer, partial sequence;
           chloroplast
          Length = 939

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 226 tgcattatcaatcatgtaaa 245
           ||||||||||||||||||||
Sbjct: 296 tgcattatcaatcatgtaaa 315
to top
>gb|AY736008.1| Eupatorium hyssopifolium rps4-trnT intergenic spacer, partial
           sequence; tRNA-Thr (trnT) gene, complete sequence; and
           trnT-trnL intergenic spacer, partial sequence;
           chloroplast
          Length = 931

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 226 tgcattatcaatcatgtaaa 245
           ||||||||||||||||||||
Sbjct: 294 tgcattatcaatcatgtaaa 313
to top
>gb|AY736007.1| Eupatorium rotundifolium rps4-trnT intergenic spacer, partial
           sequence; tRNA-Thr (trnT) gene, complete sequence; and
           trnT-trnL intergenic spacer, partial sequence;
           chloroplast
          Length = 939

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 226 tgcattatcaatcatgtaaa 245
           ||||||||||||||||||||
Sbjct: 301 tgcattatcaatcatgtaaa 320
to top
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome
          Length = 152765

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   tgcattatcaatcatgtaaa 245
             ||||||||||||||||||||
Sbjct: 46326 tgcattatcaatcatgtaaa 46345
to top
>gb|AY495827.1| Oryctolagus cuniculus clone 179L1 kappa 1 light chain immunglobulin gene
              region
          Length = 205144

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    cttccctccttcagtgactt 328
              ||||||||||||||||||||
Sbjct: 129596 cttccctccttcagtgactt 129577
to top
>gb|AC161259.2| Mus musculus BAC clone RP23-465D18 from chromosome 9, complete sequence
          Length = 175659

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 143   acaacactaaagtcttttgaggat 166
             ||||||||||||||||||| ||||
Sbjct: 84747 acaacactaaagtcttttgtggat 84724


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,073,553
Number of Sequences: 3902068
Number of extensions: 5073553
Number of successful extensions: 111528
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111156
Number of HSP's gapped (non-prelim): 364
length of query: 533
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 510
effective length of database: 17,143,297,704
effective search space: 8743081829040
effective search space used: 8743081829040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top