No.
Definition
Score (bits)
E Value
1 gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
131
2e-27
2 gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ...
125
2e-25
3 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
50
0.007
4 dbj|AK061040.1| Oryza sativa (japonica cultivar-group) cDNA clon...
50
0.007
5 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
50
0.007
6 emb|AL928750.3|CNS08CBN Oryza sativa chromosome 12, . BAC OSJNBa...
50
0.007
7 dbj|AK071656.1| Oryza sativa (japonica cultivar-group) cDNA clon...
48
0.029
8 gb|AC158304.11| Mus musculus chromosome 7, clone RP24-192F23, co...
42
1.8
9 gb|AY219070.1| Arabidopsis thaliana hypothetical protein (At2g20...
42
1.8
10 gb|AY219069.1| Arabidopsis thaliana hypothetical protein (At2g20...
42
1.8
11 gb|AC007048.5| Arabidopsis thaliana chromosome 2 clone F23N11 ma...
42
1.8
12 gb|AC022164.8| Homo sapiens chromosome 16 clone RP11-513N24, com...
42
1.8
13 gb|AC025281.8| Homo sapiens chromosome 16 clone RP11-356O24, com...
42
1.8
14 gb|AC022081.32|AC022081 Homo sapiens 12 BAC RP11-977P2 (Roswell ...
42
1.8
15 emb|CT009550.5| Mouse DNA sequence from clone RP23-38F20 on chro...
40
7.0
16 emb|Z72502.1|CEC08B6 Caenorhabditis elegans Cosmid C08B6, comple...
40
7.0
17 gb|AC154380.2| Mus musculus BAC clone RP23-52F1 from chromosome ...
40
7.0
18 emb|AL356272.14| Human DNA sequence from clone RP1-61P15 on chro...
40
7.0
19 gb|AC102274.20| Mus musculus chromosome 3, clone RP24-286L19, co...
40
7.0
20 ref|NM_176301.1| Drosophila melanogaster ergic53 CG6822-RB, tran...
40
7.0
21 ref|NM_080037.2| Drosophila melanogaster ergic53 CG6822-RA, tran...
40
7.0
22 gb|AY051971.1| Drosophila melanogaster LD43551 full length cDNA
40
7.0
23 gb|AY857136.2| HIV-1 isolate 8330785 from Australia, partial genome
40
7.0
24 gb|AF223385.1|AF223385 Drosophila melanogaster rhea mRNA, comple...
40
7.0
25 gb|AC162300.3| Mus musculus chromosome 3, clone RP23-224F23, com...
40
7.0
26 emb|AL772211.7| Mouse DNA sequence from clone RP23-473B24 on chr...
40
7.0
27 gb|CP000163.1| Drosophila melanogaster genomic scaffold 21100002...
40
7.0
28 gb|AC154435.2| Mus musculus BAC clone RP24-188N22 from chromosom...
40
7.0
>gb|AF427791.1 | Hordeum vulgare Mla locus, complete sequence
Length = 261265
Score = 131 bits (66), Expect = 2e-27
Identities = 69/70 (98%)
Strand = Plus / Minus
Query: 229 cctctggtttaaataaggatatccttccgaatataatatatcaccagaataatatcagcg 288
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 138220 cctctggtttaaataaggatatcgttccgaatataatatatcaccagaataatatcagcg 138161
Query: 289 aattccacct 298
||||||||||
Sbjct: 138160 aattccacct 138151
Score = 131 bits (66), Expect = 2e-27
Identities = 69/70 (98%)
Strand = Plus / Minus
Query: 229 cctctggtttaaataaggatatccttccgaatataatatatcaccagaataatatcagcg 288
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 98512 cctctggtttaaataaggatatcgttccgaatataatatatcaccagaataatatcagcg 98453
Query: 289 aattccacct 298
||||||||||
Sbjct: 98452 aattccacct 98443
Score = 129 bits (65), Expect = 1e-26
Identities = 68/69 (98%)
Strand = Plus / Minus
Query: 362 ccttgatctatcttttcttcaactacaacgtcttcaaaatagtttcacaaaagtgataat 421
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 137607 ccttgatctatcttttcttcaactacaacgtcttcaaaatagttccacaaaagtgataat 137548
Query: 422 acgctccct 430
|||||||||
Sbjct: 137547 acgctccct 137539
Score = 129 bits (65), Expect = 1e-26
Identities = 68/69 (98%)
Strand = Plus / Minus
Query: 362 ccttgatctatcttttcttcaactacaacgtcttcaaaatagtttcacaaaagtgataat 421
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 97893 ccttgatctatcttttcttcaactacaacgtcttcaaaatagttccacaaaagtgataat 97834
Query: 422 acgctccct 430
|||||||||
Sbjct: 97833 acgctccct 97825
Score = 125 bits (63), Expect = 2e-25
Identities = 70/71 (98%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 295 accttgatcttcaacttagtagttcatatcgcatga-aaaatagttccacaaaagtgata 353
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 137769 accttgatcttcaacttagtagttcatatcgcatgacaaaatagttccacaaaagtgata 137710
Query: 354 atacgctccct 364
|||||||||||
Sbjct: 137709 atacgctccct 137699
Score = 125 bits (63), Expect = 2e-25
Identities = 70/71 (98%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 295 accttgatcttcaacttagtagttcatatcgcatga-aaaatagttccacaaaagtgata 353
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 98055 accttgatcttcaacttagtagttcatatcgcatgacaaaatagttccacaaaagtgata 97996
Query: 354 atacgctccct 364
|||||||||||
Sbjct: 97995 atacgctccct 97985
Score = 79.8 bits (40), Expect = 8e-12
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 362 ccttgatctatcttttcttcaactacaacgtcttcaaaat 401
||||||||||||||||||||||||||||||||||||||||
Sbjct: 137447 ccttgatctatcttttcttcaactacaacgtcttcaaaat 137408
Score = 79.8 bits (40), Expect = 8e-12
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 362 ccttgatctatcttttcttcaactacaacgtcttcaaaat 401
||||||||||||||||||||||||||||||||||||||||
Sbjct: 97733 ccttgatctatcttttcttcaactacaacgtcttcaaaat 97694
Score = 67.9 bits (34), Expect = 3e-08
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 331 aaaatagttccacaaaagtgataatacgctccct 364
||||||||||||||||||||||||||||||||||
Sbjct: 137572 aaaatagttccacaaaagtgataatacgctccct 137539
Score = 67.9 bits (34), Expect = 3e-08
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 331 aaaatagttccacaaaagtgataatacgctccct 364
||||||||||||||||||||||||||||||||||
Sbjct: 97858 aaaatagttccacaaaagtgataatacgctccct 97825
Score = 61.9 bits (31), Expect = 2e-06
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 396 caaaatagtttcacaaaagtgataatacgctccct 430
|||||||||| ||||||||||||||||||||||||
Sbjct: 137733 caaaatagttccacaaaagtgataatacgctccct 137699
Score = 61.9 bits (31), Expect = 2e-06
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 396 caaaatagtttcacaaaagtgataatacgctccct 430
|||||||||| ||||||||||||||||||||||||
Sbjct: 98019 caaaatagttccacaaaagtgataatacgctccct 97985
>gb|AY661558.1 | Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
Length = 439641
Score = 125 bits (63), Expect = 2e-25
Identities = 70/71 (98%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 295 accttgatcttcaacttagtagttcatatcgcatga-aaaatagttccacaaaagtgata 353
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 206969 accttgatcttcaacttagtagttcatatcgcatgacaaaatagttccacaaaagtgata 207028
Query: 354 atacgctccct 364
|||||||||||
Sbjct: 207029 atacgctccct 207039
Score = 91.7 bits (46), Expect = 2e-15
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 362 ccttgatctatcttttcttcaactacaacgtcttcaaaatagtttcacaaaagtgata 419
||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||
Sbjct: 207131 ccttgatctatcttttcttcaactacatcgtctttaaaatagttccacaaaagtgata 207188
Score = 71.9 bits (36), Expect = 2e-09
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 362 ccttgatctatcttttcttcaactacaacgtcttcaaaat 401
||||||||||||||||||||||||||||| ||||||||||
Sbjct: 207290 ccttgatctatcttttcttcaactacaacttcttcaaaat 207329
Score = 61.9 bits (31), Expect = 2e-06
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 396 caaaatagtttcacaaaagtgataatacgctccct 430
|||||||||| ||||||||||||||||||||||||
Sbjct: 207005 caaaatagttccacaaaagtgataatacgctccct 207039
Score = 58.0 bits (29), Expect = 3e-05
Identities = 65/76 (85%), Gaps = 7/76 (9%)
Strand = Plus / Plus
Query: 229 cctctggtttaaataaggatatccttccgaatataatata------tcaccagaataata 282
|||||||||||| |||||||||||||||||||| || ||| ||||||| ||||||
Sbjct: 206603 cctctggtttaa-taaggatatccttccgaatacaaaataaaaatatcaccagtataata 206661
Query: 283 tcagcgaattccacct 298
||||||||||| ||||
Sbjct: 206662 tcagcgaattcgacct 206677
Score = 46.1 bits (23), Expect = 0.11
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 331 aaaatagttccacaaaagtgata 353
|||||||||||||||||||||||
Sbjct: 207166 aaaatagttccacaaaagtgata 207188
>gb|AC154435.2 | Mus musculus BAC clone RP24-188N22 from chromosome 14, complete
sequence
Length = 173318
Score = 40.1 bits (20), Expect = 7.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 480 acttctgccttccttccaca 499
||||||||||||||||||||
Sbjct: 82581 acttctgccttccttccaca 82600
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,775,026
Number of Sequences: 3902068
Number of extensions: 4775026
Number of successful extensions: 82425
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82313
Number of HSP's gapped (non-prelim): 109
length of query: 520
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 497
effective length of database: 17,143,297,704
effective search space: 8520218958888
effective search space used: 8520218958888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)