ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3k18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YCF4_CHLRE (O20030) Photosystem I assembly protein ycf4 31 3.4
2JSN1_YEAST (P47135) Protein JSN1 (Protein PUF1) 31 4.5
3K1688_MOUSE (P59281) Protein KIAA1688 30 5.8
4LAMA4_MOUSE (P97927) Laminin alpha-4 chain precursor 30 5.8
5LYPA3_MOUSE (Q8VEB4) 1-O-acylceramide synthase precursor (EC 2.3... 30 10.0
6LYPA3_HUMAN (Q8NCC3) 1-O-acylceramide synthase precursor (EC 2.3... 30 10.0

>YCF4_CHLRE (O20030) Photosystem I assembly protein ycf4|
          Length = 197

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +1

Query: 142 ILFWRRGGFCFNEFTKKEASVRIYK 216
           ++FW  GG  FNEF KKE  VRI++
Sbjct: 97  LIFWNVGGG-FNEFNKKEGFVRIFR 120



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>JSN1_YEAST (P47135) Protein JSN1 (Protein PUF1)|
          Length = 1091

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 494 PATSSSFTISKFLYVYPTKFASLDGSIWKNKILSADMKLNMSELNVPTAL 643
           P TS++ T S  L  Y TK A  D  +  +    AD K+N + L +P ++
Sbjct: 216 PTTSNNTTNSNTLNDYSTKTAYFDNMVSTSGSQMADNKMNTNNLAIPNSV 265



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>K1688_MOUSE (P59281) Protein KIAA1688|
          Length = 1107

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 597 ALRILFFQMLPSKDANFVGYTYKNFEIVNDDEVA-GIAELKKKSSKSK 457
           A+ + FF   P   +   GY Y++ + VND +V   I EL +++SK K
Sbjct: 802 AICLAFFPPTPKFHSYLEGYIYRHMDPVNDTKVTQHIKELLERNSKKK 849



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>LAMA4_MOUSE (P97927) Laminin alpha-4 chain precursor|
          Length = 1816

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 142 WCLILAARLVWLAVCWFDSLGDGS 71
           WC +LA  L+W AVC   + GDG+
Sbjct: 7   WCSVLALWLLWCAVCSNAASGDGN 30



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>LYPA3_MOUSE (Q8VEB4) 1-O-acylceramide synthase precursor (EC 2.3.1.-) (ACS)|
           (Lysosomal phospholipase A2) (Lysophospholipase 3)
           (LCAT-like lysophospholipase) (LLPL)
          Length = 412

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 497 QGLPS*RKRVPNQNGPTIKTLFESMDEDEPVHGSFLNMLPHKEG 366
           +G P   +R PN+NGP    L E ++E   ++G  + ++ H  G
Sbjct: 157 RGAPYDWRRAPNENGPYFLALREMIEEMYQMYGGPVVLVAHSMG 200



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>LYPA3_HUMAN (Q8NCC3) 1-O-acylceramide synthase precursor (EC 2.3.1.-) (ACS)|
           (Lysosomal phospholipase A2) (Lysophospholipase 3)
           (LPLA2) (LCAT-like lysophospholipase) (LLPL)
          Length = 412

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 497 QGLPS*RKRVPNQNGPTIKTLFESMDEDEPVHGSFLNMLPHKEG 366
           +G P   +R PN+NGP    L E ++E   ++G  + ++ H  G
Sbjct: 157 RGAPYDWRRAPNENGPYFLALREMIEEMYQLYGGPVVLVAHSMG 200


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,005,824
Number of Sequences: 219361
Number of extensions: 2166351
Number of successful extensions: 5767
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5767
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7536258401
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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