ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3f12 |
|---|---|
| Clone Library Name | barley_pub |
>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)| Length = 605 Score = 35.4 bits (80), Expect = 0.25 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = -3 Query: 656 DQSNDSCDHKCQ-HHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKE 495 D+ C +CQ + P RK+QCV EC + P + E K WR+ +E Sbjct: 119 DKQFKECQQRCQWQEQRPERKQQCVKECREQYQEDPWKGERENK---WREEEEEE 170 Score = 30.8 bits (68), Expect = 6.1 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 7/61 (11%) Frame = -3 Query: 638 CDHKCQHHKVPAR---KKQCVDECHRREHHHPSRA--ACERKCSHWRD--PTRKERCVQT 480 C CQ + R ++ C ++ +++ P + C+++C W++ P RK++CV+ Sbjct: 87 CRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQ-WQEQRPERKQQCVKE 145 Query: 479 C 477 C Sbjct: 146 C 146
>BCL9_HUMAN (O00512) B-cell lymphoma 9 protein (Bcl-9) (Legless homolog)| Length = 1426 Score = 33.9 bits (76), Expect = 0.72 Identities = 23/61 (37%), Positives = 28/61 (45%) Frame = +2 Query: 497 PSLSGLSNGYTSSRKPPCSGDDAPVCGTRPRTASSSPELYDVGTCGRTSRCSDHRPPPPS 676 PSL S G+TSS KPP P P T +S L +V + G PPPP+ Sbjct: 924 PSLPAPSPGWTSSPKPPLQSPGIPPNHKAPLTMASPAMLGNVESGG---------PPPPT 974 Query: 677 A 679 A Sbjct: 975 A 975
>BCL9_MOUSE (Q9D219) B-cell lymphoma 9 protein (Bcl-9)| Length = 1425 Score = 33.5 bits (75), Expect = 0.94 Identities = 23/61 (37%), Positives = 27/61 (44%) Frame = +2 Query: 497 PSLSGLSNGYTSSRKPPCSGDDAPVCGTRPRTASSSPELYDVGTCGRTSRCSDHRPPPPS 676 PSL S G+TSS KPP P P T +S L V + G PPPP+ Sbjct: 923 PSLPAPSPGWTSSPKPPLQSPGIPPNHKAPLTMASPAMLGSVESGG---------PPPPT 973 Query: 677 A 679 A Sbjct: 974 A 974
>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)| Length = 588 Score = 33.1 bits (74), Expect = 1.2 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Frame = -3 Query: 674 KEVEVDDQSNDSCDHKCQHH-----KVPARKKQCVDECHRREHHHPSRAACERK 528 K E + Q + +CQ H + P RK+QCV EC R +P R E + Sbjct: 111 KRFEQEQQQSQRQFQECQQHCHQQEQRPERKQQCVRECRERYQENPWRREREEE 164
>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system| defective) (Homeobox protein NK-2) Length = 723 Score = 33.1 bits (74), Expect = 1.2 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 10/58 (17%) Frame = -3 Query: 695 SSSAPTPKEVEVDDQSNDS--------CDHKC--QHHKVPARKKQCVDECHRREHHHP 552 S+ +PTP V D+ N S DH +HH P+ +Q H ++HHHP Sbjct: 252 SALSPTPAGVSADEHHNGSGTGGGAGEADHHSTTEHHAPPSHPQQ--QHPHHQQHHHP 307
>LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3)| Length = 367 Score = 32.7 bits (73), Expect = 1.6 Identities = 17/59 (28%), Positives = 27/59 (45%) Frame = +3 Query: 117 SSCGKHT*QTNLLKEGKGTEFHGALF*ERHRQSCCYCKLLVFYSHAFAVIASKTYTRAY 293 S CG+H T+ ++ KG +H A F +C CK + FA++ K R + Sbjct: 158 SRCGRHIHSTDWVRRAKGNVYHLACF------ACFSCKRQLSTGEEFALVEEKVLCRVH 210
>ROM1_YEAST (P53046) RHO1 GDP-GTP exchange protein 1 (Protein kinase C| suppressor SKC1) Length = 1155 Score = 32.7 bits (73), Expect = 1.6 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = -3 Query: 686 APTPKEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKC-SHWRD 510 +PT K++ ++D + + C P++K+ V H R+H PS + + SH D Sbjct: 112 SPTNKKISINDSTRQDKGNSCTTTSSPSQKRSNVLLPHVRKHSSPSLLSFSKNSGSHMGD 171 Query: 509 PTR 501 P + Sbjct: 172 PNQ 174
>ACH91_ONCMY (Q8JFN7) Neuronal acetylcholine receptor protein, alpha-9-I subunit| precursor (Nicotinic acetylcholine receptor subunit alpha 9-I) (NACHR alpha 9-I) Length = 572 Score = 32.3 bits (72), Expect = 2.1 Identities = 18/62 (29%), Positives = 27/62 (43%) Frame = -3 Query: 698 MSSSAPTPKEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSH 519 ++ P PKE ++ S +C C HHK Q + C R + RA C K + Sbjct: 487 LNEPLPYPKEKHLNPASAPACSCPCPHHKQVVYNIQYIANCFREQ-----RATC-AKGAE 540 Query: 518 WR 513 W+ Sbjct: 541 WK 542
>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)| Length = 1391 Score = 32.3 bits (72), Expect = 2.1 Identities = 13/56 (23%), Positives = 26/56 (46%) Frame = -3 Query: 638 CDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 471 C+ + + K A KK+C +E +RE + C ++ T K++C + + Sbjct: 1112 CEERAKKEKEAAEKKRC-EEAAKREKEAAEKKKCAEAAKKEKEATEKQKCAEAAKK 1166 Score = 32.3 bits (72), Expect = 2.1 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 1/138 (0%) Frame = -3 Query: 881 IKVPARKKQCVDECHS-REASSPKQGVLREXV*PLXRPGKXGTVRAAVHALRPSXSTWAA 705 +K A +KQC + +EA+ KQ E L + L+ AA Sbjct: 1023 LKEAAEQKQCEERAKKLKEAAEKKQ--CEERAKKLKEAAEQKQCEERAKKLKE-----AA 1075 Query: 704 VTMSSSAPTPKEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKC 525 KE E ++ C+ + + K A KKQC +E ++E + CE Sbjct: 1076 EKKQCEERAKKEKEAAEKKQ--CEERAKKLKEAAEKKQC-EERAKKEKEAAEKKRCEEAA 1132 Query: 524 SHWRDPTRKERCVQTCMR 471 ++ K++C + + Sbjct: 1133 KREKEAAEKKKCAEAAKK 1150
>DPOL_HBVAW (P03158) DNA polymerase (EC 2.7.7.7)| Length = 481 Score = 30.4 bits (67), Expect = 8.0 Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 10/137 (7%) Frame = -3 Query: 836 SREASSPKQGVLREXV*PLXRPGKXGTVRAAVHALRPSXSTWAAVTMSSSAPTPKEVEVD 657 SR P QG L +PG+ G++RA H PS + V S S ++ Sbjct: 216 SRLGLQPHQGPLASS-----QPGRSGSIRARAH---PSTRRYFGVEPSGSG----HIDHS 263 Query: 656 DQSNDSCDHKCQHHKVP----ARKKQCVDECHRREHH--HPSRAACERKCS----HWRDP 507 ++ SC H+ K + K+ H E H PS A + + S W Sbjct: 264 VNNSSSCLHQSAVRKAAYSHLSTSKRQSSSGHAVEFHCLAPSSAGSQSQGSVSSCWWLQF 323 Query: 506 TRKERCVQTCMRYGLNL 456 + C + C+ + +NL Sbjct: 324 RNSKPCSEYCLSHLVNL 340
>SIA8B_PANTR (P61643) Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II)| Length = 375 Score = 30.4 bits (67), Expect = 8.0 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = -3 Query: 770 GKXGTVRAAVHALRPSXSTWAAVTMSSSAPTPKEVEVDDQSNDSCDHKCQ 621 G GT+R+AV++L + V SS+P V D+SN+S H Q Sbjct: 36 GGRGTIRSAVNSLHSKSNRAEVVINGSSSPA-----VVDRSNESIKHNIQ 80
>SIA8B_HUMAN (Q92186) Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II)| (Sialyltransferase X) (STX) Length = 375 Score = 30.4 bits (67), Expect = 8.0 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = -3 Query: 770 GKXGTVRAAVHALRPSXSTWAAVTMSSSAPTPKEVEVDDQSNDSCDHKCQ 621 G GT+R+AV++L + V SS+P V D+SN+S H Q Sbjct: 36 GGRGTIRSAVNSLHSKSNRAEVVINGSSSPA-----VVDRSNESIKHNIQ 80
>ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 19) (Meltrin beta) (Metalloprotease and disintegrin dentritic antigen marker) (MADDAM) Length = 956 Score = 30.4 bits (67), Expect = 8.0 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = +1 Query: 160 KEKEQSSMELSSRRGIANHAATASYWSFILTPLPS*LARRIRGRIYRSVYTR 315 +E E SS+ LS+ RGI +S S+++ PLP + + IYRS + + Sbjct: 121 RETELSSVTLSTCRGIRGLITVSSNLSYVIEPLPDSKGQHL---IYRSEHLK 169 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105,216,837 Number of Sequences: 219361 Number of extensions: 1909702 Number of successful extensions: 5781 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 5338 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5766 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 10289152125 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
