>PERI_MOUSE (P15331) Peripherin|
          Length = 475

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
 Frame = -1

Query: 478 GSASPTRSVRAYAKADEEEGEKKVPKQSLFGNITEAL--DFSQVRSEKDAEL--LYEARD 311
           GS SP+ S R  +      G  ++P + L  ++ EAL  +F   RS +  EL  L +   
Sbjct: 54  GSGSPSSSARLGSFRAPRAGALRLPSERLDFSMAEALNQEFLATRSNEKQELQELNDRFA 113

Query: 310 SIKDEGRMTREQYAALRRKI 251
           +  ++ R   +Q AALR ++
Sbjct: 114 NFIEKVRFLEQQNAALRGEL 133

>PERI_RAT (P21807) Peripherin|
          Length = 468

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
 Frame = -1

Query: 478 GSASPTRSVRAYAKADEEEGEKKVPKQSLFGNITEAL--DFSQVRSEKDAEL--LYEARD 311
           GS SP+ S R  +      G  ++P + L  ++ EAL  +F   RS +  EL  L +   
Sbjct: 47  GSGSPSSSARLGSFRAPRAGALRLPSERLDFSMAEALNQEFLATRSNEKQELQELNDRFA 106

Query: 310 SIKDEGRMTREQYAALRRKI 251
           +  ++ R   +Q AALR ++
Sbjct: 107 NFIEKVRFLEQQNAALRGEL 126

>CALCA_CHICK (P10286) Calcitonin gene-related peptide precursor (CGRP)|
          Length = 125

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 28/90 (31%), Positives = 33/90 (36%)
 Frame = -1

Query: 313 DSIKDEGRMTREQYAALRRKIGGTYKDFFKSXXXXXXXXXXXXXXDKTCKVCKKDTRGEP 134
           +SI D  R+T   Y A RR +    KDF +                   + C   T    
Sbjct: 33  ESITD--RVTLSDYEA-RRLLNALVKDFIQMTAEELEQASEGNSVTAQKRACNTATCVTH 89

Query: 133 RQVDNLGRYMHVACAENSKPTNFFSKLFGR 44
           R  D L R   V    N  PTN  SK FGR
Sbjct: 90  RLADFLSRSGGVG-KNNFVPTNVGSKAFGR 118

>PSR1_YEAST (Q07800) Phosphatase PSR1 (EC 3.1.3.-) (Plasma membrane sodium|
           response protein 1)
          Length = 427

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = -1

Query: 472 ASPTRSVRAYAKADEEEGEKKVPKQSLFGNITEALDFSQVRSE---KDAELLYEARDSIK 302
           +SPT +V A    +  + EK++ K  L+    E  +  ++  E   +   ++ E  D++K
Sbjct: 88  SSPTAAVTATTTNNMTKVEKRISKDDLYEEKYEVDEDEEIDDEDNRRSRGIVQEKGDAVK 147

Query: 301 DEGRMTREQ 275
           D  R  ++Q
Sbjct: 148 DTSRQKKQQ 156

>VS06_ROTPY (Q06386) VP6 protein (Major capsid protein) (Major internal|
           structural protein)
          Length = 397

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 197 VFAINFN-I*LEEILVGATNLPPKRCILFPCHPPFIFDGIPGLVQQL 334
           + A NF+ I L   LV   N+ P    LFP  PPFIF    GL  ++
Sbjct: 280 IIARNFDTIRLSFQLVRPPNMTPAVANLFPQAPPFIFHATVGLTLRI 326

>LAMC1_DROME (P15215) Laminin gamma-1 chain precursor (Laminin B2 chain)|
          Length = 1639

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 18/77 (23%), Positives = 30/77 (38%)
 Frame = -1

Query: 352  RSEKDAELLYEARDSIKDEGRMTREQYAALRRKIGGTYKDFFKSXXXXXXXXXXXXXXDK 173
            ++ KDAEL+    +  K   R  RE+   L  ++  T  D FK                +
Sbjct: 1466 QASKDAELIRRKANETKVAARNLREEADQLNHRVKLTEMDIFKLEESSTKDDNLVDDAKR 1525

Query: 172  TCKVCKKDTRGEPRQVD 122
                 K DT+   +Q++
Sbjct: 1526 KVGQAKADTQEAQKQIE 1542

>MAST3_HUMAN (O60307) Microtubule-associated serine/threonine-protein kinase 3 (EC|
            2.7.11.1)
          Length = 1309

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 21/42 (50%), Positives = 24/42 (57%)
 Frame = +1

Query: 250  QSSSEALHTVPLSSSLHL*WNPWPRTAAPRPSPTGPARSPAP 375
            +S S  LH   LSSS  L  +P   T +  PSPT P RSPAP
Sbjct: 1090 RSFSSGLHH-SLSSSESLPGSP---THSLSPSPTTPCRSPAP 1127

>CYB_SMIOO (Q9XP77) Cytochrome b|
          Length = 381

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 24/70 (34%), Positives = 28/70 (40%)
 Frame = +2

Query: 173 LVHPTFLHVFAINFNI*LEEILVGATNLPPKRCILFPCHPPFIFDGIPGLVQQLRVLLRP 352
           LVH TFLH    N  + +           P  C   P HP +    I GL+  L VLL  
Sbjct: 194 LVHLTFLHETGSNNPLGI-----------PSDCDKIPFHPYYSIKDILGLMFLLLVLLSL 242

Query: 353 DLREVQRLGD 382
            L     LGD
Sbjct: 243 ALFSPDLLGD 252

>TRUA_MOUSE (Q9WU56) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 393

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
 Frame = -1

Query: 454 VRAYAKADEEE---GEKKV--PKQSLFGNITEALDFSQVRSEKDAELLYEARDSIKDEGR 290
           V+ YA     E   GE+KV  PK    G + E + F +       + L+E  D  ++EG+
Sbjct: 271 VKGYAPESVLERSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGGDGLHEPLDWTQEEGK 330

Query: 289 MT--REQY 272
           +T  +EQY
Sbjct: 331 VTAFKEQY 338

>GRP3_DAUCA (P37705) Glycine-rich protein A3|
          Length = 195

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 383 HHRGAGLLAGPVGEGRGAAVRGQGFH 306
           HH G G +AG V  GR AA    G H
Sbjct: 94  HHSGHGGVAGMVAGGRAAAAAAYGVH 119

>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2|
          Length = 964

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 313 PWPRTAAPRPSPTGPARSPAP 375
           P P   AP+P P  P++SP P
Sbjct: 157 PKPHAPAPKPKPGAPSKSPKP 177

>STK31_MOUSE (Q99MW1) Serine/threonine-protein kinase 31 (EC 2.7.11.1)|
          Length = 1018

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = -1

Query: 406 PKQSLF-GNITEALDFSQVRSEKDAELLYEARDSIKDEGRMTREQYAALRRKIGGTYKDF 230
           PK+SL  G+     + S  + ++D +L+ E  + +K E  +  E Y AL  K+  T ++ 
Sbjct: 280 PKESLAAGDFNLGSNVSLAKIKQDQKLI-EENEKLKTEKEVLLENYKALELKVEQTAQEL 338

Query: 229 FKSXXXXXXXXXXXXXXDKTC 167
            +                KTC
Sbjct: 339 QQEKTATMDLTKHLESTLKTC 359

>ALM1_SCHPO (Q9UTK5) Abnormal long morphology protein 1 (Sp8)|
          Length = 1727

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -1

Query: 418 EKKVPKQSLFGNITEALDFSQVR---SEKDAELLYEARDSIKDEGRMTRE 278
           EK   +QSL+ N+TE L+ ++ +   SE     L E  DS+  E ++ +E
Sbjct: 307 EKLTSQQSLYNNVTEELNNNKQQLLISENSLRELQEKYDSVVSELQVVKE 356

>PCF11_YEAST (P39081) Protein PCF11 (protein 1 of CF I)|
          Length = 626

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 397 SLFGNITEALDFSQVRSEKDAELLYEARDSIKDEGRM---TREQYAALRRKIGG 245
           SLFGNI+    F ++  +K    +     S+K EG +    +E    L +K+ G
Sbjct: 291 SLFGNISGVESFQEIEKKKSLNKINNLYASLKAEGLIYTPPKESIVTLYKKLNG 344


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,384,672
Number of Sequences: 219361
Number of extensions: 1270026
Number of successful extensions: 5185
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5158
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)