>RNT_BLOFL (Q7VR55) Ribonuclease T (EC 3.1.13.-) (Exoribonuclease T) (RNase T)|
          Length = 223

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 66  NMLHTAERQSEPKLHLYCSGTNIYKKKTAWPWKKTLVIN 182
           N  H+A   +E    L+C+  N +KK   WPWK +L+ N
Sbjct: 179 NKAHSALYDAEKTAILFCTLVNAWKKLGGWPWKPSLITN 217

>TAF7_YEAST (Q05021) Transcription initiation factor TFIID subunit 7|
           (TBP-associated factor 7) (TBP-associated factor 67 kDa)
           (TAFII-67)
          Length = 590

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = -3

Query: 541 VVDAPAPSEVNASASNKPLLDVVDLTNPSETYTPLVNEPFADVVDLPEPSSLYAXAADGL 362
           +VD P   EVN S   K LL   D++       P+  E     ++ P+   L     +G+
Sbjct: 164 LVDLPTVIEVNKSVDRKNLLKTFDVSQMLLCIRPIQEEEEVYALEAPDTEDLVVKHFEGI 223

Query: 361 GLFASIDDLPKTSXTFVEGSNG 296
                 D++ +   TF++G NG
Sbjct: 224 E-----DEIWENKETFLKGYNG 240

>DCAK1_RAT (O08875) Serine/threonine-protein kinase DCAMKL1 (EC 2.7.11.1)|
           (Doublecortin-like and CAM kinase-like 1)
           (Calcium/calmodulin-dependent protein kinase type I-like
           CPG16)
          Length = 433

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -3

Query: 586 SSDDDAFAMDGPLLDVVDAPAPSEVNASASNKPLLDVVDLTNPSETYT--PLVNEPFADV 413
           S DD     D  L+  VD P+P   N S S K L++++ L N  + ++   ++  P+ + 
Sbjct: 283 SGDDQEVLFDQILMGQVDFPSPYWDNVSDSAKELINMMLLVNVDQRFSAVQVLEHPWVND 342

Query: 412 VDLPE 398
             LPE
Sbjct: 343 DGLPE 347

>DCAK1_MOUSE (Q9JLM8) Serine/threonine-protein kinase DCAMKL1 (EC 2.7.11.1)|
           (Doublecortin-like and CAM kinase-like 1)
          Length = 756

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -3

Query: 586 SSDDDAFAMDGPLLDVVDAPAPSEVNASASNKPLLDVVDLTNPSETYT--PLVNEPFADV 413
           S DD     D  L+  VD P+P   N S S K L++++ L N  + ++   ++  P+ + 
Sbjct: 606 SGDDQEVLFDQILMGQVDFPSPYWDNVSDSAKELINMMLLVNVDQRFSAVQVLEHPWVND 665

Query: 412 VDLPE 398
             LPE
Sbjct: 666 DGLPE 670

>SEP1_SCHPO (O43058) Forkhead protein sep1|
          Length = 663

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
 Frame = -3

Query: 553 PLLDVVDAPAPSEVNASASNKPLLDVVDLTNPSETYTPLVNEPFADVVDLPEPS------ 392
           P +D     APS++ A  S+  +  VV +T+P ++ T   + P +       PS      
Sbjct: 295 PYVDTPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNE 354

Query: 391 SLYAXAADGLGLFASIDDLP 332
           SL   +A  LGL  + DD P
Sbjct: 355 SLGIKSAKSLGL--NKDDAP 372

>PSAB_HETTR (Q9XQV2) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)|
           (PSI-B)
          Length = 776

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = -3

Query: 580 DDDAFAMDGPLLDVVDAPAPSEVNASASNKPLLDVV--DLTNPSETYTPLVNEPFADVVD 407
           +D   A   P   ++  P  +++  SAS K L       + NPS  +   VN+ F  ++ 
Sbjct: 495 NDTVTAFGEPQNSILIEPIFAQIIQSASGKTLYGTTLFSVVNPSSGWVQSVNKSFGSLLL 554

Query: 406 LPEPSSLYAXAADGLGLFASI 344
              P  L A  A  LGL  ++
Sbjct: 555 PIGPGDLLAHHAIALGLHVTV 575

>NET1_YEAST (P47035) Nucleolar protein NET1|
          Length = 1189

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 13/49 (26%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = -3

Query: 538  VDAPAPS---EVNASASNKPLLDVVDLTNPSETYTPLVNEPFADVVDLP 401
            ++AP+PS   ++NA+    P+  ++D+++P    +   + P + + DLP
Sbjct: 1028 IEAPSPSVNKKINATPDKIPVTQLMDMSSPPSVKSKTTSNPSSILHDLP 1076

>CEMA_PORPU (P51232) Chloroplast envelope membrane protein|
          Length = 278

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 159 TATQFFFCIYLSPNSINVALAHFAFLPCVAYL 64
           T+ ++ F + +SP  +N A   F F PC+ YL
Sbjct: 56  TSVKYIFLLLISPVLVNQASKFFDFGPCIDYL 87

>GBF_DICDI (P36417) G-box-binding factor (GBF)|
          Length = 708

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 17/76 (22%), Positives = 36/76 (47%)
 Frame = +1

Query: 352 QKARARPPXKHTSLKARADQPHQRKARSPKEYMSLKGLSDQPHQARVCWRQTH*PLMVPA 531
           Q  + +PP ++     +  Q HQ++ + P+ +  ++    Q H  ++  +Q H   M   
Sbjct: 124 QAQQNQPPQQN-----QQQQHHQQQQQQPQHHQQMQ---QQQHHQQMQQQQQHHQQMQQQ 175

Query: 532 HQPRQVKAHPWQRHHH 579
              +Q++ H  Q+H H
Sbjct: 176 QHHQQMQHHQLQQHQH 191

>BGAL_BACHD (Q9K9C6) Beta-galactosidase (EC 3.2.1.23) (Lactase)|
          Length = 1014

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 17/100 (17%)
 Frame = +1

Query: 337 DHLYWQ---KARARPPXK-HTSLKAR-----ADQPHQRKARSPKEYMSLKGLSDQPHQAR 489
           DH+Y++   +A+  PP     SL        A  P+ R    PKE+  L G   +     
Sbjct: 26  DHVYYETVEEAKKEPPMSMRHSLNGHWKFHYAINPNTR----PKEFYQL-GFDCK----- 75

Query: 490 VCWRQTH*PLMVPAH-------QPRQVKA-HPWQRHHHLR 585
            CW      ++VP H       +P+ V   +PW  HHHLR
Sbjct: 76  -CWDD----ILVPGHIQLQGYGKPQYVNTMYPWDGHHHLR 110

>GLNE_HAEIN (P44419) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)|
           ([Glutamate--ammonia-ligase] adenylyltransferase)
           (Glutamine-synthetase adenylyltransferase) (ATase)
          Length = 981

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +1

Query: 301 CSLQQMSXKFLVDHLYWQK---ARARPPXKHTSLKARADQPHQRKARSPKEYMSLK 459
           CSL   S   L D   W+K    RARP    +SLKA+ +   Q+   + ++   LK
Sbjct: 802 CSLSAFSHYQLNDAWTWEKQALVRARPVFGESSLKAKFEHIRQQVLSASRDIEQLK 857

>CYB_CROOB (Q85PN7) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 558 MGLYLTWLMRRHHQRSMRLPPTNPCLMWLI 469
           M L +T L+   +QRSM   P + CL WL+
Sbjct: 299 MVLAITPLLHTSNQRSMTFRPLSQCLFWLL 328


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,754,850
Number of Sequences: 219361
Number of extensions: 1610218
Number of successful extensions: 5175
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5175
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)