>MASS1_HUMAN (Q8WXG9) Monogenic audiogenic seizure susceptibility protein 1|
            homolog precursor (Very large G-protein coupled receptor
            1) (Usher syndrome type-2C protein) (G-protein coupled
            receptor 98)
          Length = 6307

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 428  NTP*GTLTSLFYFASLIKEGGKEYRNFFSLLPIDKD-KERHTYDMWISRILGYY 270
            N+P   +   +  A++I E   +    FSL PIDK  +E  T   WI R  GY+
Sbjct: 1094 NSPGDPVVYQYGVATVIIEANDDPNGIFSLEPIDKAVEEGKTNAFWILRHRGYF 1147

>DBP6_KLULA (Q6CKZ4) ATP-dependent RNA helicase DBP6 (EC 3.6.1.-)|
          Length = 630

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
 Frame = +1

Query: 172 NLCMDSGKIPVLYSITVE*EIKMRMVSS*RKIE*YPKILLIHISYVCLS----------- 318
           N    SGK  + YS+ +   ++ R V+  R I   P  +LIH  Y CLS           
Sbjct: 234 NASTGSGKT-LAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVS 292

Query: 319 ---LSLSIGSSEKKFLYSFPPSLM 381
              L  S+     KFLY+ P  L+
Sbjct: 293 MSKLENSLKEEHNKFLYNSPDILI 316

>VIE1_MCMVS (P11210) Immediate-early protein 1 (IE1) (Immediate-early|
           phosphoprotein PP89)
          Length = 595

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 165 PFYFRPLFPISXXXLIWMSM*PIESCSYNTYIIVCITIRKRK 40
           P Y +P         +W  M  IES S +T+++V   ++ R+
Sbjct: 237 PCYTKPFLDAKSQLAVWQQMKAIESESVSTHVVVVEALKLRE 278


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,164,110
Number of Sequences: 219361
Number of extensions: 1204769
Number of successful extensions: 1971
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1971
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)