ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2o18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GAT2_YEAST (P40209) Protein GAT2 32 1.2
2YEAG_ECOLI (P0ACY3) Hypothetical protein yeaG 30 4.4
3YEAG_ECOL6 (P0ACY4) Hypothetical protein yeaG 30 4.4
4YEAG_ECO57 (P0ACY5) Hypothetical protein yeaG 30 4.4
5YR791_MIMIV (Q5UQ04) Putative ankyrin repeat protein R791 30 5.8
6TNFL6_PIG (Q9BEA8) Tumor necrosis factor ligand superfamily memb... 29 9.9

>GAT2_YEAST (P40209) Protein GAT2|
          Length = 560

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = +2

Query: 365 AQLYIHISHNVNGLHSQMGISHIYYNSILNQINIPXNXDCHVEMXHYIIVA*QQ-----Q 529
           A  Y H ++N N  HS   I +   NS+L  +NI  + + H    H I  A Q+      
Sbjct: 69  AYYYHHPNNNDNNNHSNNTIKNNNINSVLPAVNIQISNNSHYRNTHQIPSAPQRLVSIIP 128

Query: 530 DPH 538
           DPH
Sbjct: 129 DPH 131



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>YEAG_ECOLI (P0ACY3) Hypothetical protein yeaG|
          Length = 644

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = -3

Query: 332 PDMG*FCSHRKGSQWVHSENNRNPQAFSDTTLLIF*GGSLYEQYCLCSQHGLFIWKPLQH 153
           P  G   +H   S+WV   NN+N +AF D   ++         YCL     + I++ L +
Sbjct: 294 PFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIV------KVPYCLRISEEIKIYEKLLN 347

Query: 152 LNIMFRLSHCQC 117
            +    L+H  C
Sbjct: 348 HS---ELTHAPC 356



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>YEAG_ECOL6 (P0ACY4) Hypothetical protein yeaG|
          Length = 644

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = -3

Query: 332 PDMG*FCSHRKGSQWVHSENNRNPQAFSDTTLLIF*GGSLYEQYCLCSQHGLFIWKPLQH 153
           P  G   +H   S+WV   NN+N +AF D   ++         YCL     + I++ L +
Sbjct: 294 PFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIV------KVPYCLRISEEIKIYEKLLN 347

Query: 152 LNIMFRLSHCQC 117
            +    L+H  C
Sbjct: 348 HS---ELTHAPC 356



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>YEAG_ECO57 (P0ACY5) Hypothetical protein yeaG|
          Length = 644

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = -3

Query: 332 PDMG*FCSHRKGSQWVHSENNRNPQAFSDTTLLIF*GGSLYEQYCLCSQHGLFIWKPLQH 153
           P  G   +H   S+WV   NN+N +AF D   ++         YCL     + I++ L +
Sbjct: 294 PFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIV------KVPYCLRISEEIKIYEKLLN 347

Query: 152 LNIMFRLSHCQC 117
            +    L+H  C
Sbjct: 348 HS---ELTHAPC 356



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>YR791_MIMIV (Q5UQ04) Putative ankyrin repeat protein R791|
          Length = 287

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +2

Query: 275 FLNEPTEILFCVNKINPYQATXFFFHRIHPAQLYIHISHNVNGLHS--QMGISHI 433
           +LN PTEI  C+ K++        F   +   L+    HN N LH   + G  HI
Sbjct: 2   YLNIPTEIWLCILKMDIDSTINLLFTNKYFFDLFEFAKHNFNVLHEVIKRGYVHI 56



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>TNFL6_PIG (Q9BEA8) Tumor necrosis factor ligand superfamily member 6 (Fas|
           antigen ligand) (Fas ligand) (CD178 antigen) (CD95L
           protein) [Contains: Tumor necrosis factor ligand
           superfamily member 6, membrane form; Tumor necrosis
           factor ligand superfamily m
          Length = 282

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 21/75 (28%), Positives = 36/75 (48%)
 Frame = -3

Query: 323 G*FCSHRKGSQWVHSENNRNPQAFSDTTLLIF*GGSLYEQYCLCSQHGLFIWKPLQHLNI 144
           G +C+++  S  V++ N+R PQ      L++  G  +   YC   Q    +W    +L  
Sbjct: 200 GQYCNNQPLSHKVYTRNSRYPQ-----DLVLMEGKMM--NYCTTGQ----MWARSSYLGA 248

Query: 143 MFRLSHCQCLYLNSS 99
           +F L+    LY+N S
Sbjct: 249 VFNLTSADHLYVNVS 263


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,582,795
Number of Sequences: 219361
Number of extensions: 1646391
Number of successful extensions: 2533
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2533
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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