ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal9d09 |
|---|---|
| Clone Library Name | barley_pub |
>PVG4_SCHPO (Q9HGP0) MADS-box transcription factor pvg4 (Pyruvylated| Gal-beta-1,3-epitope synthesis protein 4) (PvGal synthesis protein 4) (MADS-box transcription factor 2) Length = 372 Score = 39.7 bits (91), Expect = 0.007 Identities = 21/62 (33%), Positives = 26/62 (41%) Frame = -2 Query: 448 NPQCCFQNWCERRLPDGEHVGGCDAAVPWRLHEPDRRPEHLPPHVCSCKPHVPDGEGPQT 269 NPQ Q++C HV C P + H P RP H PPH PH + P Sbjct: 140 NPQV--QSYCRPEPLSSNHVRSCPPFPPTQHHHPHTRPPHHPPH-----PHFHNNNYPPP 192 Query: 268 FC 263 +C Sbjct: 193 YC 194
>RPOC1_ADICA (Q85FM8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 694 Score = 32.3 bits (72), Expect = 1.0 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = -2 Query: 475 WQRTRWAFCNPQCCFQNWCERRLPDGEHVGGCDAAVPWRLHEPDRRPE 332 +Q+ R +P+ ++W ER LP+G+ +G D P+ LH +PE Sbjct: 7 YQQLRIGLASPEQ-IRSWAERELPNGDVIGQVDQ--PYTLHYKTHKPE 51
>RPOC1_CHAGL (Q8MA11) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 661 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = -2 Query: 430 QNWCERRLPDGEHVGGCDAAVPWRLHEPDRRPE 332 +NW ER LP+GE VG P+ LH +PE Sbjct: 21 RNWAERTLPNGEIVG--KVTKPYTLHYNSHKPE 51
>YRAO_BACSU (O05407) Hypothetical protein yraO| Length = 438 Score = 32.0 bits (71), Expect = 1.4 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Frame = -3 Query: 480 RFGSGHGGPFAIHNVVFRIGVRGGYLT--------VNTLVAAMLPFLGDFMSLTGALSTF 325 R G + +VF GV G L+ +L++ + +G F + AL++ Sbjct: 284 RIAEHSGNAITVVLLVFSAGVFAGILSGTKMVDAIAGSLISIIPSSMGGFFPVIVALTSI 343 Query: 324 PLTFVLANHMY 292 P TFVL+N Y Sbjct: 344 PFTFVLSNDAY 354
>NUOM_BUCAI (P57263) NADH-quinone oxidoreductase chain M (EC 1.6.99.5) (NADH| dehydrogenase I, chain M) (NDH-1, chain M) Length = 505 Score = 31.6 bits (70), Expect = 1.8 Identities = 23/77 (29%), Positives = 37/77 (48%) Frame = -3 Query: 534 TVIALHIFASPMYEYLDTRFGSGHGGPFAIHNVVFRIGVRGGYLTVNTLVAAMLPFLGDF 355 TV AL I + +Y+ T+ S GG ++ + + G + N V F+G+F Sbjct: 350 TVAALCILSGQIYKRFKTQDMSKMGGLWSC--IYWIPGFSLFFSLANLGVPGTGNFIGEF 407 Query: 354 MSLTGALSTFPLTFVLA 304 + L+G FPL +LA Sbjct: 408 LILSGVFEVFPLVSILA 424
>RPOC1_MARPO (P06273) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 684 Score = 31.6 bits (70), Expect = 1.8 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = -2 Query: 430 QNWCERRLPDGEHVGGCDAAVPWRLHEPDRRPE 332 +NW ER LP+GE VG P+ LH +PE Sbjct: 21 RNWAERVLPNGEIVG--QVTKPYTLHYKTHKPE 51
>RPOC1_ZYGCR (Q32RG1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 715 Score = 31.2 bits (69), Expect = 2.3 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = -2 Query: 430 QNWCERRLPDGEHVGGCDAAVPWRLHEPDRRPE 332 ++W ERRLP+GE +G + P+ +H +PE Sbjct: 21 RSWAERRLPNGELIG--RVSKPYTIHYQTHKPE 51
>MRP2_RABIT (Q28689) Canalicular multispecific organic anion transporter 1| (ATP-binding cassette sub-family C member 2) (Multidrug resistance-associated protein 2) (Canalicular multidrug resistance protein) (Epithelial basolateral chloride conductance reg Length = 1564 Score = 30.4 bits (67), Expect = 4.0 Identities = 11/24 (45%), Positives = 18/24 (75%) Frame = -1 Query: 203 PQSLRSGLSCLIPVLTTYLLICEA 132 PQSLRS + C + +++T ++IC A Sbjct: 1094 PQSLRSWMMCFLAIISTLIMICMA 1117
>TBX2_MOUSE (Q60707) T-box transcription factor TBX2 (T-box protein 2)| Length = 701 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = -2 Query: 373 AVPWRLHEPDRRPEHLPPHVCSCKPHVPDGEGP 275 A P RL EP+R E P CS +P G+GP Sbjct: 374 ASPARLTEPERSRERRSPERCSKEPTEGGGDGP 406
>PANK1_HUMAN (Q8TE04) Pantothenate kinase 1 (EC 2.7.1.33) (Pantothenic acid| kinase 1) (hPanK1) (hPanK) Length = 598 Score = 30.4 bits (67), Expect = 4.0 Identities = 23/59 (38%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Frame = -2 Query: 418 ERRLPD--GEHVGGCDAAVPWRLHEPDRRPEHLPPHVCSCKPHVPDGEGPQTFCLSERL 248 ER +P G VG AAV LH P PPHVCS P PQ L L Sbjct: 146 ERSVPHSPGAPVGTSAAAVNGLLHNGFHPPPVQPPHVCSRGPVGGSDAAPQRLPLLPEL 204
>MRP2_HUMAN (Q92887) Canalicular multispecific organic anion transporter 1| (ATP-binding cassette sub-family C member 2) (Multidrug resistance-associated protein 2) (Canalicular multidrug resistance protein) Length = 1545 Score = 30.4 bits (67), Expect = 4.0 Identities = 11/24 (45%), Positives = 19/24 (79%) Frame = -1 Query: 203 PQSLRSGLSCLIPVLTTYLLICEA 132 PQSLRS ++C + +++T ++IC A Sbjct: 1096 PQSLRSWITCFLGIISTLVMICMA 1119
>RPOC1_PHYPA (P60288) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 679 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -2 Query: 430 QNWCERRLPDGEHVGGCDAAVPWRLHEPDRRPE 332 ++W ER LP+GE VG P+ LH +PE Sbjct: 21 RSWAERVLPNGEIVG--QVTKPYTLHYKTHKPE 51
>NU4M_ASPAM (P03913) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 488 Score = 29.6 bits (65), Expect = 6.7 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = -3 Query: 453 FAIHNVVFRIGVRGGYLTVNTLVAAMLPFLGDFMSLTGALSTFPLTFVLAN 301 F++ + +G G LT+N F+G+FMSL G PL VLA+ Sbjct: 371 FSVLFFILSLGNSGTPLTLN--------FIGEFMSLYGVFERMPLLGVLAS 413
>PPO_VITVI (P43311) Polyphenol oxidase, chloroplast precursor (EC 1.10.3.1)| (PPO) (Catechol oxidase) Length = 607 Score = 29.6 bits (65), Expect = 6.7 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -2 Query: 406 PDGEHVGGCDAAVPWRLHEPDRRPEHLPPHVC-----SCKPHVPDGE 281 PDG ++ A+ P L++ R +HLPP V +P +PD E Sbjct: 250 PDGMYMPTIYASSPSSLYDEKRNAKHLPPTVIDLDYDGTEPTIPDDE 296
>RHG07_RAT (Q63744) Rho-GTPase-activating protein 7 (Rho-type| GTPase-activating protein 7) (p122-RhoGAP) (Deleted in liver cancer 1 protein homolog) (Dlc-1) (StAR-related lipid transfer protein 12) (StARD12) (START domain-containing protein 12) Length = 1091 Score = 29.3 bits (64), Expect = 8.8 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%) Frame = +2 Query: 161 VLESSMISLSAATAAVTDNKLNPTTFSQCQPF*KAESLGPFTIRYMWFARTNVRGKVLRA 340 VL++ + LS TAAV +N++ PT + C L P R N +V++ Sbjct: 763 VLQTLLYFLSHVTAAVKENQMTPTNLAVC--------LAPSLFHLNTLKRENSSPRVMQR 814 Query: 341 PVRLMKSPR---NGSIAAT 388 L K + N ++AAT Sbjct: 815 KQSLGKPDQKDLNENLAAT 833
>RHG07_MOUSE (Q9R0Z9) Rho-GTPase-activating protein 7 (Rho-type| GTPase-activating protein 7) (Deleted in liver cancer 1 protein homolog) (Dlc-1) (StAR-related lipid transfer protein 12) (StARD12) (START domain-containing protein 12) Length = 1092 Score = 29.3 bits (64), Expect = 8.8 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%) Frame = +2 Query: 161 VLESSMISLSAATAAVTDNKLNPTTFSQCQPF*KAESLGPFTIRYMWFARTNVRGKVLRA 340 VL++ + LS TAAV +N++ PT + C L P R N +V++ Sbjct: 764 VLQTLLYFLSDVTAAVKENQMTPTNLAVC--------LAPSLFHLNTLKRENSSPRVMQR 815 Query: 341 PVRLMKSPR---NGSIAAT 388 L K + N ++AAT Sbjct: 816 KQSLGKPDQKDLNENLAAT 834
>RHG07_HUMAN (Q96QB1) Rho-GTPase-activating protein 7 (Rho-type| GTPase-activating protein 7) (Deleted in liver cancer 1 protein) (Dlc-1) (HP protein) (StAR-related lipid transfer protein 12) (StARD12) (START domain-containing protein 12) Length = 1091 Score = 29.3 bits (64), Expect = 8.8 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%) Frame = +2 Query: 161 VLESSMISLSAATAAVTDNKLNPTTFSQCQPF*KAESLGPFTIRYMWFARTNVRGKVLRA 340 VL++ + LS TAAV +N++ PT + C L P R N +V++ Sbjct: 763 VLQTLLYFLSDVTAAVKENQMTPTNLAVC--------LAPSLFHLNTLKRENSSPRVMQR 814 Query: 341 PVRLMKSPR---NGSIAAT 388 L K + N ++AAT Sbjct: 815 KQSLGKPDQKDLNENLAAT 833
>Y2288_MYCBO (P64962) Hypothetical protein Mb2288| Length = 409 Score = 29.3 bits (64), Expect = 8.8 Identities = 20/72 (27%), Positives = 35/72 (48%) Frame = -3 Query: 471 SGHGGPFAIHNVVFRIGVRGGYLTVNTLVAAMLPFLGDFMSLTGALSTFPLTFVLANHMY 292 +G G FA+H + ++G G LT VA ML G+ + + T P LA ++ Sbjct: 144 TGRGRGFAVHEALDQVGAMIGPLT----VAGMLAITGNAYAPALGVLTLPGGAALALLLW 199 Query: 291 LMVKGPKLSAFQ 256 L + P+ +++ Sbjct: 200 LQRRVPRPESYE 211
>Y2265_MYCTU (P64961) Hypothetical protein Rv2265/MT2327| Length = 409 Score = 29.3 bits (64), Expect = 8.8 Identities = 20/72 (27%), Positives = 35/72 (48%) Frame = -3 Query: 471 SGHGGPFAIHNVVFRIGVRGGYLTVNTLVAAMLPFLGDFMSLTGALSTFPLTFVLANHMY 292 +G G FA+H + ++G G LT VA ML G+ + + T P LA ++ Sbjct: 144 TGRGRGFAVHEALDQVGAMIGPLT----VAGMLAITGNAYAPALGVLTLPGGAALALLLW 199 Query: 291 LMVKGPKLSAFQ 256 L + P+ +++ Sbjct: 200 LQRRVPRPESYE 211 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,244,454 Number of Sequences: 219361 Number of extensions: 1792876 Number of successful extensions: 4578 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4389 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4570 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
