ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2l15 |
|---|---|
| Clone Library Name | barley_pub |
>RPE65_RAT (O70276) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 38.9 bits (89), Expect = 0.003 Identities = 21/63 (33%), Positives = 30/63 (47%) Frame = -2 Query: 236 SGAIFVAKEDARHXDDGWIISFVHDEGANISQAHXIDARRFESGXVARITXPQRVPYGFH 57 S IFV++ DA DDG ++S V GA A+ + + +AR +P FH Sbjct: 467 SEPIFVSQPDALEEDDGVVLSVVVSPGAGQKPAYLLVLNAKDLSEIARAEVETNIPVTFH 526 Query: 56 GAF 48 G F Sbjct: 527 GLF 529
>RPE65_MOUSE (Q91ZQ5) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 38.9 bits (89), Expect = 0.003 Identities = 21/63 (33%), Positives = 30/63 (47%) Frame = -2 Query: 236 SGAIFVAKEDARHXDDGWIISFVHDEGANISQAHXIDARRFESGXVARITXPQRVPYGFH 57 S IFV++ DA DDG ++S V GA A+ + + +AR +P FH Sbjct: 467 SEPIFVSQPDALEEDDGVVLSVVVSPGAGQKPAYLLVLNAKDLSEIARAEVETNIPVTFH 526 Query: 56 GAF 48 G F Sbjct: 527 GLF 529
>RPE65_HUMAN (Q16518) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 37.7 bits (86), Expect = 0.008 Identities = 22/63 (34%), Positives = 29/63 (46%) Frame = -2 Query: 236 SGAIFVAKEDARHXDDGWIISFVHDEGANISQAHXIDARRFESGXVARITXPQRVPYGFH 57 S IFV+ DA DDG ++S V GA A+ + + VAR +P FH Sbjct: 467 SEPIFVSHPDALEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFH 526 Query: 56 GAF 48 G F Sbjct: 527 GLF 529
>RPE65_CERAE (Q9XT71) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 37.7 bits (86), Expect = 0.008 Identities = 22/63 (34%), Positives = 29/63 (46%) Frame = -2 Query: 236 SGAIFVAKEDARHXDDGWIISFVHDEGANISQAHXIDARRFESGXVARITXPQRVPYGFH 57 S IFV+ DA DDG ++S V GA A+ + + VAR +P FH Sbjct: 467 SEPIFVSHPDALEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFH 526 Query: 56 GAF 48 G F Sbjct: 527 GLF 529
>RPE65_CANFA (Q9TVB8) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 37.7 bits (86), Expect = 0.008 Identities = 22/63 (34%), Positives = 29/63 (46%) Frame = -2 Query: 236 SGAIFVAKEDARHXDDGWIISFVHDEGANISQAHXIDARRFESGXVARITXPQRVPYGFH 57 S IFV+ DA DDG ++S V GA A+ + + VAR +P FH Sbjct: 467 SEPIFVSHPDALEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFH 526 Query: 56 GAF 48 G F Sbjct: 527 GLF 529
>RPE65_BOVIN (Q28175) Retinal pigment epithelium-specific 65 kDa protein| (Membrane receptor p63) Length = 532 Score = 37.7 bits (86), Expect = 0.008 Identities = 22/63 (34%), Positives = 29/63 (46%) Frame = -2 Query: 236 SGAIFVAKEDARHXDDGWIISFVHDEGANISQAHXIDARRFESGXVARITXPQRVPYGFH 57 S IFV+ DA DDG ++S V GA A+ + + VAR +P FH Sbjct: 467 SEPIFVSHPDALEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFH 526 Query: 56 GAF 48 G F Sbjct: 527 GLF 529
>RPE65_CHICK (Q9YGX2) Retinal pigment epithelium-specific 65 kDa protein| Length = 533 Score = 37.7 bits (86), Expect = 0.008 Identities = 21/63 (33%), Positives = 29/63 (46%) Frame = -2 Query: 236 SGAIFVAKEDARHXDDGWIISFVHDEGANISQAHXIDARRFESGXVARITXPQRVPYGFH 57 S IFV+ DA DDG ++S V G+ A+ + + VAR +P FH Sbjct: 468 SEPIFVSHPDALEEDDGVVLSIVISPGSGPKPAYLLILNAKDMSEVARAEVEVNIPVTFH 527 Query: 56 GAF 48 G F Sbjct: 528 GLF 530
>BCDO2_HUMAN (Q9BYV7) Beta,beta-carotene 9',10'-dioxygenase (EC 1.14.99.-)| (Beta-carotene dioxygenase 2) (B-diox-II) Length = 556 Score = 37.4 bits (85), Expect = 0.010 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = -2 Query: 236 SGAIFVAKEDARHXDDGWIISFVHDEGANISQAHXI-DARRFESGXVARITXPQRVPYGF 60 S +FV D G I+S V N S + DA+ FE + R P ++PYGF Sbjct: 492 SEPVFVPAPGTNEEDGGVILSVVITPNQNESNFLLVLDAKNFEE--LGRAEVPVQMPYGF 549 Query: 59 HGAFV 45 HG F+ Sbjct: 550 HGTFI 554
>BCDO2_MACFA (Q8HXG8) Beta,beta-carotene 9',10'-dioxygenase (EC 1.14.99.-)| (Beta-carotene dioxygenase 2) (B-diox-II) Length = 556 Score = 37.0 bits (84), Expect = 0.013 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = -2 Query: 236 SGAIFVAKEDARHXDDGWIISFVHDEGANISQAHXI-DARRFESGXVARITXPQRVPYGF 60 S +FV D G I+S V N S + DA+ FE + R P ++PYGF Sbjct: 492 SEPVFVPVPGTNEEDGGVILSVVITPNQNESNFLLVLDAKNFEE--LGRAEVPVQMPYGF 549 Query: 59 HGAFV 45 HG F+ Sbjct: 550 HGTFI 554
>RPE65_AMBTI (Q9YI25) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 36.2 bits (82), Expect = 0.022 Identities = 20/63 (31%), Positives = 28/63 (44%) Frame = -2 Query: 236 SGAIFVAKEDARHXDDGWIISFVHDEGANISQAHXIDARRFESGXVARITXPQRVPYGFH 57 S IFV++ DA DDG ++S V G A + + +AR +P FH Sbjct: 467 SEPIFVSQPDAIEEDDGVVLSVVISPGEGQKPAFLLILNAKDMSEIARAEVDSNIPVTFH 526 Query: 56 GAF 48 G F Sbjct: 527 GMF 529
>RPE65_CYNPY (Q8AXN9) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 34.7 bits (78), Expect = 0.064 Identities = 18/63 (28%), Positives = 29/63 (46%) Frame = -2 Query: 236 SGAIFVAKEDARHXDDGWIISFVHDEGANISQAHXIDARRFESGXVARITXPQRVPYGFH 57 S IFV++ DA DDG ++S + + G A + + +AR +P FH Sbjct: 467 SEPIFVSQPDAMEEDDGVVLSVIVNPGPGQKPAFLLILNAKDMSEIARAEVDINIPVTFH 526 Query: 56 GAF 48 G + Sbjct: 527 GMY 529
>BCDO2_MOUSE (Q99NF1) Beta,beta-carotene 9',10'-dioxygenase (EC 1.14.99.-)| (Beta-carotene dioxygenase 2) (B-diox-II) Length = 532 Score = 33.9 bits (76), Expect = 0.11 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = -2 Query: 236 SGAIFVAKEDARHXDDGWIISFVHDEGANISQAHXI-DARRFESGXVARITXPQRVPYGF 60 S +FV A D G I+S V + S + DA+ F + R P ++PYGF Sbjct: 468 SEPVFVPVPGADEEDSGVILSVVITPNQSESNFLLVLDAKSFTE--LGRAEVPVQMPYGF 525 Query: 59 HGAFV 45 HG FV Sbjct: 526 HGTFV 530
>TF7L1_HUMAN (Q9HCS4) Transcription factor 7-like 1 (HMG box transcription| factor 3) (TCF-3) Length = 588 Score = 28.9 bits (63), Expect = 3.5 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +2 Query: 161 HRAQKRLSIHHPHVAHPLSPQKLLLSRXDXFQGGGTPHGLN 283 H + K + HPH HPL+P L+ D F G P L+ Sbjct: 174 HLSNKVPVVQHPHHMHPLTP--LITYSNDHFSPGSPPTHLS 212
>ASPM_FELCA (P62288) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 3461 Score = 28.9 bits (63), Expect = 3.5 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +2 Query: 44 RQMLHESHRALFVAMLFXQLXHSQIFVRR*X-APVIYLRPHRAQKRLSIHH 193 RQ+L E HRA + ++ +F R+ A + + +RA+KR ++ H Sbjct: 2549 RQLLREKHRAAIIIQSTYRMYRQYLFYRKIQWATKVIQKIYRAKKRKALQH 2599
>PYRC_NEIMB (Q9K0D1) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 344 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +2 Query: 197 HVAHPLSPQKLLLSRXDXFQGGGTPH 274 +VA ++PQ LLL+R D GG PH Sbjct: 189 NVAATVTPQHLLLNRNDLLVGGVRPH 214
>PYRC_NEIMA (Q9JVD6) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 344 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +2 Query: 197 HVAHPLSPQKLLLSRXDXFQGGGTPH 274 +VA ++PQ LLL+R D GG PH Sbjct: 189 NVAATVTPQHLLLNRNDLLVGGVRPH 214
>PYRC_SYNY3 (P74438) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 342 Score = 28.1 bits (61), Expect = 6.0 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +2 Query: 197 HVAHPLSPQKLLLSRXDXFQGGGTPH 274 ++A ++PQ LL SR F+GG PH Sbjct: 189 NIAATITPQHLLFSRNALFKGGICPH 214
>PYRC_ARATH (O04904) Dihydroorotase, mitochondrial precursor (EC 3.5.2.3)| (DHOase) Length = 377 Score = 28.1 bits (61), Expect = 6.0 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +2 Query: 200 VAHPLSPQKLLLSRXDXFQGGGTPH 274 V ++PQ LLL+R FQGG PH Sbjct: 224 VGATVTPQHLLLNRNALFQGGLQPH 248
>TF7L1_XENTR (Q6GL68) Transcription factor 7-like 1 (HMG box transcription| factor 3) (TCF-3) Length = 553 Score = 27.7 bits (60), Expect = 7.9 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +2 Query: 161 HRAQKRLSIHHPHVAHPLSPQKLLLSRXDXFQGGGTPHG 277 H + K + HPH HPL+P L++ + GTP G Sbjct: 152 HLSNKVPVVQHPHHMHPLTP---LITYSNEHFSPGTPPG 187
>SOX1_HUMAN (O00570) SOX-1 protein| Length = 387 Score = 27.7 bits (60), Expect = 7.9 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +2 Query: 158 PHRAQKRLSIHHPHVAHPLSPQKL 229 PHR HHPH AHP +PQ + Sbjct: 224 PHRTPAHPHPHHPH-AHPHNPQPM 246
>T7L1A_XENLA (P70062) Transcription factor 7-like 1-A (HMG box transcription| factor 3-A) (TCF-3-A) (xTcf-3) Length = 554 Score = 27.7 bits (60), Expect = 7.9 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +2 Query: 161 HRAQKRLSIHHPHVAHPLSPQKLLLSRXDXFQGGGTPHG 277 H + K + HPH HPL+P L++ + GTP G Sbjct: 152 HLSNKVPVVQHPHHMHPLTP---LITYSNEHFSPGTPPG 187
>T7L1B_XENLA (Q90ZB6) Transcription factor 7-like 1-B (HMG box transcription| factor 3-B) (TCF-3-B) (xTcf-3) Length = 551 Score = 27.7 bits (60), Expect = 7.9 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +2 Query: 161 HRAQKRLSIHHPHVAHPLSPQKLLLSRXDXFQGGGTPHG 277 H + K + HPH HPL+P L++ + GTP G Sbjct: 152 HLSNKVPVVQHPHHMHPLTP---LITYSNEHFSPGTPPG 187
>T7L1D_XENLA (P70064) Transcription factor 7-like 1-D (HMG box transcription| factor 3-D) (TCF-3-D) (xTcf-3d) Length = 550 Score = 27.7 bits (60), Expect = 7.9 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +2 Query: 161 HRAQKRLSIHHPHVAHPLSPQKLLLSRXDXFQGGGTPHG 277 H + K + HPH HPL+P L++ + GTP G Sbjct: 151 HLSNKVPVVQHPHHMHPLTP---LITYSNEHFSPGTPPG 186
>T7L1C_XENLA (P70063) Transcription factor 7-like 1-C (HMG box transcription| factor 3-C) (TCF-3-C) (xTcf-3c) Length = 550 Score = 27.7 bits (60), Expect = 7.9 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +2 Query: 161 HRAQKRLSIHHPHVAHPLSPQKLLLSRXDXFQGGGTPHG 277 H + K + HPH HPL+P L++ + GTP G Sbjct: 151 HLSNKVPVVQHPHHMHPLTP---LITYSNEHFSPGTPPG 186 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,233,397 Number of Sequences: 219361 Number of extensions: 596406 Number of successful extensions: 1902 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1883 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1902 length of database: 80,573,946 effective HSP length: 70 effective length of database: 65,218,676 effective search space used: 1565248224 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
