ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3a14 |
|---|---|
| Clone Library Name | barley_pub |
>ADA12_HUMAN (O43184) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 12) (Meltrin alpha) Length = 909 Score = 37.0 bits (84), Expect = 0.061 Identities = 20/48 (41%), Positives = 24/48 (50%) Frame = +2 Query: 143 PQTPSVPEARAPALALSHQSQG*CRPVCPSHWGPCSPSATT*RWLHSL 286 P+ PSVP PA Q+QG C+P P P P A T R H+L Sbjct: 826 PRAPSVPARPLPAKPALRQAQGTCKPNPPQKPLPADPLARTTRLTHAL 873
>AIPL1_MACMU (Q95MP0) Aryl-hydrocarbon-interacting protein-like 1| Length = 392 Score = 33.9 bits (76), Expect = 0.51 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = -1 Query: 671 EPPLLRSRDDETLNKRTYDYAAASVQPKREMETRPRSVPPREIETRPRSVPPAQP 507 E + +++E L R + + QP E +P + PP E+ T P + PPA+P Sbjct: 309 ENRMAEKQEEERLRCRNM-LSQGATQPPAEPPAQPPTAPPAELSTGPPADPPAEP 362
>CSN12_GIBZE (Q4IMN9) COP9 signalosome complex subunit 12| Length = 502 Score = 32.3 bits (72), Expect = 1.5 Identities = 20/70 (28%), Positives = 32/70 (45%) Frame = +1 Query: 298 RSGLVQTSTLEMVPPTSSPQFERTTMKAMRMDAMQRLNSVAEIAWVISCGVKSTSCFRVS 477 R+G TL VPP PQ R+ A+ R + + I +KS++ + Sbjct: 15 RNGYKLAQTLSPVPPADDPQ---------RLMAVWRSTNSHSVKGDIKHFIKSSTAHKRK 65 Query: 478 RDHDESSVWL 507 DHDE++ W+ Sbjct: 66 LDHDETTGWV 75
>TIM54_NEUCR (Q9C0Q7) Mitochondrial import inner membrane translocase subunit| tim-54 Length = 425 Score = 32.3 bits (72), Expect = 1.5 Identities = 22/67 (32%), Positives = 31/67 (46%) Frame = -1 Query: 611 AAASVQPKREMETRPRSVPPREIETRPRSVPPAQPNQTDDSSWSLETLKQLVDFTPQEIT 432 A A+ + E +P E +P+ P +P T S +S ETL L TPQE+T Sbjct: 201 APAAAEGSTSTEDKPAEEKKEEEAPKPKRPPQPKPYNTT-SDYSSETLHPL---TPQELT 256 Query: 431 QAISATE 411 A+ E Sbjct: 257 PAVPIRE 263
>YMU1_YEAST (Q12231) Transposon Ty1 protein A| Length = 440 Score = 32.3 bits (72), Expect = 1.5 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 15/77 (19%) Frame = -1 Query: 617 DYAAASVQPKREMETRPRS--VP--PREIETRPRSVPPAQ-----------PNQTDDSSW 483 +Y AS + + T P S VP P +P SVPP Q NQ + S W Sbjct: 42 EYDKASTKANSQQTTTPASSAVPENPHHASPQPASVPPPQNGPYPQQCMMTQNQANPSGW 101 Query: 482 SLETLKQLVDFTPQEIT 432 S ++ +TP +++ Sbjct: 102 SFYGHPSMIPYTPYQMS 118
>AIPL1_PAPCY (Q95MN8) Aryl-hydrocarbon-interacting protein-like 1| Length = 372 Score = 32.0 bits (71), Expect = 1.9 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = -1 Query: 671 EPPLLRSRDDETLNKRTYDYAAASVQPKREMETRPRSVPPREIETRPRSVPPAQ 510 E + +++E L R + + QP E P + PP E+ T P + PPA+ Sbjct: 309 ENRMAEKQEEERLRCRNM-LSQGATQPPTEPPAEPHTAPPAELSTGPPAEPPAE 361
>SRO9_YEAST (P25567) RNA-binding protein SRO9 (Suppressor of RHO3 protein 9)| Length = 434 Score = 32.0 bits (71), Expect = 1.9 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Frame = +3 Query: 255 QQRHDDGY-IRYDEEQERPRTNQYSGDGATNIQPPVRKNHHEG---NENG 392 QQ DG+ EE + T+Q +G QPP +NHH N NG Sbjct: 139 QQMKKDGFESAVGEEDSKDATSQENGQSTQQQQPPHHRNHHHSHHHNSNG 188
>G6PI_COREF (Q8FR39) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 542 Score = 31.6 bits (70), Expect = 2.5 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +1 Query: 493 SSVWLGWAGGTDLGLVSISLGGTDLG 570 S WLG+ G T +V+I +GG+DLG Sbjct: 133 SGAWLGYTGRTIKKVVNIGIGGSDLG 158
>FMT_GEOKA (Q5L0S3) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 319 Score = 31.2 bits (69), Expect = 3.3 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Frame = -1 Query: 680 PVYEPPLLRSRDDETLNKRTYDYAAASVQPKREMETRPRSVPPR-EIETRPRSVPPAQPN 504 P + P+LR D+ Y AA QP + + VPP ++E R +P QP Sbjct: 10 PDFAVPILRQLLDDG-----YHVAAVVTQPDKPKGRKREPVPPPVKVEAERRGIPVLQPT 64 Query: 503 QTDDSSWSLETLKQLVDFTPQEITQA 426 + + E +Q++ F P I A Sbjct: 65 KIREP----EQYEQVLAFAPDLIVTA 86
>KKQ8_YEAST (P36004) Probable serine/threonine-protein kinase YKL168C (EC| 2.7.11.1) Length = 734 Score = 31.2 bits (69), Expect = 3.3 Identities = 20/60 (33%), Positives = 29/60 (48%) Frame = -1 Query: 677 VYEPPLLRSRDDETLNKRTYDYAAASVQPKREMETRPRSVPPREIETRPRSVPPAQPNQT 498 ++ PP RSRD +N Y ++S PKR E RS +I P++ P Q + T Sbjct: 37 LFRPP--RSRDSSPINVTRIPYRSSSTSPKRSSEPPRRSTVSAQI-LDPKNSPIRQRSYT 93
>YJZ7_YEAST (P47098) Transposon Ty1 protein B| Length = 1755 Score = 31.2 bits (69), Expect = 3.3 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 15/80 (18%) Frame = -1 Query: 626 RTYDYAAASVQPKREMETRPRS--VP--PREIETRPRSVPPAQ-----------PNQTDD 492 +T + AS + + T P S VP P +P SVPP Q NQ + Sbjct: 39 KTEECEKASTKANSQQTTTPASSAVPENPHHASPQPASVPPPQNGPYPQQCMMTQNQANP 98 Query: 491 SSWSLETLKQLVDFTPQEIT 432 S WS ++ +TP +++ Sbjct: 99 SGWSFYGHPSMIPYTPYQMS 118
>FMT_BACHD (Q9K9Y6) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 317 Score = 31.2 bits (69), Expect = 3.3 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Frame = -1 Query: 680 PVYEPPLLRSRDDETLNKRTYDYAAASVQPKREM-ETRPRSVPPREIETRPRSVPPAQPN 504 P + P+LR L + Y AA QP R + R + PP ++E +P QP Sbjct: 9 PDFSVPVLRR-----LIEDGYTIAAVVTQPDRPVGRKRVLTPPPVKVEAEKHQIPVLQPE 63 Query: 503 QTDDSSWSLETLKQLVDFTPQEITQA 426 + D + L++L F P I A Sbjct: 64 KIRDEA----ELERLFSFEPDLIVTA 85
>YJZ6_YEAST (P47097) Transposon Ty1 protein A| Length = 440 Score = 31.2 bits (69), Expect = 3.3 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 15/80 (18%) Frame = -1 Query: 626 RTYDYAAASVQPKREMETRPRS--VP--PREIETRPRSVPPAQ-----------PNQTDD 492 +T + AS + + T P S VP P +P SVPP Q NQ + Sbjct: 39 KTEECEKASTKANSQQTTTPASSAVPENPHHASPQPASVPPPQNGPYPQQCMMTQNQANP 98 Query: 491 SSWSLETLKQLVDFTPQEIT 432 S WS ++ +TP +++ Sbjct: 99 SGWSFYGHPSMIPYTPYQMS 118
>G6PI_DEIRA (Q9RTL8) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 541 Score = 30.4 bits (67), Expect = 5.7 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +1 Query: 481 DHDESSVWLGWAGGTDLGLVSISLGGTDLGLV 576 D S WLG+ G +V+I +GG+DLG V Sbjct: 129 DAVRSGEWLGYTGKPIKNIVNIGIGGSDLGPV 160
>WA22_MYCTU (P0A686) WAG22 antigen precursor| Length = 914 Score = 30.4 bits (67), Expect = 5.7 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Frame = -3 Query: 339 WHHLQSTGL-YEAAPVPHHNECNHRHVVADGEQGPQCEGQTGRHQPWL*WLRANAGARAS 163 WH+LQ L + P R ++ +G+ G G G WL N GA A+ Sbjct: 508 WHNLQQDILSFINEPT---EALTGRPLIGNGDSGTPGTGDDGGAGGWLFGNGGNGGAGAA 564 Query: 162 GTEGV*GYADG 130 GT G G A G Sbjct: 565 GTNGSAGGAGG 575
>WA22_MYCBO (P0A687) WAG22 antigen precursor| Length = 914 Score = 30.4 bits (67), Expect = 5.7 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Frame = -3 Query: 339 WHHLQSTGL-YEAAPVPHHNECNHRHVVADGEQGPQCEGQTGRHQPWL*WLRANAGARAS 163 WH+LQ L + P R ++ +G+ G G G WL N GA A+ Sbjct: 508 WHNLQQDILSFINEPT---EALTGRPLIGNGDSGTPGTGDDGGAGGWLFGNGGNGGAGAA 564 Query: 162 GTEGV*GYADG 130 GT G G A G Sbjct: 565 GTNGSAGGAGG 575
>YAIC_ECOLI (P0AAP1) Hypothetical protein yaiC| Length = 371 Score = 30.4 bits (67), Expect = 5.7 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Frame = -2 Query: 517 QPSLTKQTTHHGLWKL*SNSWISRRRRLPK------LSQPQSSAAAWHPFSLPSWWFFRT 356 +P LT Q H S +RR RLP+ + P +S HP P WW+ Sbjct: 21 EPPLTPQNEHQR-----SGLRFARRVRLPRAVGLAGMFLPIASTLVSHP--PPGWWWLVL 73 Query: 355 GGWMLVAP 332 GW V P Sbjct: 74 VGWAFVWP 81
>YAIC_ECOL6 (P0AAP2) Hypothetical protein yaiC| Length = 371 Score = 30.4 bits (67), Expect = 5.7 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Frame = -2 Query: 517 QPSLTKQTTHHGLWKL*SNSWISRRRRLPK------LSQPQSSAAAWHPFSLPSWWFFRT 356 +P LT Q H S +RR RLP+ + P +S HP P WW+ Sbjct: 21 EPPLTPQNEHQR-----SGLRFARRVRLPRAVGLAGMFLPIASTLVSHP--PPGWWWLVL 73 Query: 355 GGWMLVAP 332 GW V P Sbjct: 74 VGWAFVWP 81
>AXN1_BRARE (P57094) Axin-1 (Axis inhibition protein 1)| Length = 835 Score = 30.4 bits (67), Expect = 5.7 Identities = 24/90 (26%), Positives = 34/90 (37%) Frame = -3 Query: 396 GIHSHCLHGGSFELGAGCWWHHLQSTGLYEAAPVPHHNECNHRHVVADGEQGPQCEGQTG 217 G+ + + G L G H + EAA + HH +H H A G+ Q E + Sbjct: 506 GLPAGKIPGLMMPLSGGQGKHQARQGPKGEAAHLHHHKHIHHTHYAAAGKPKEQAEAEAA 565 Query: 216 RHQPWL*WLRANAGARASGTEGV*GYADGL 127 R W N G + YADG+ Sbjct: 566 RMHGGFAW---NTEQHHYGPKSR-NYADGM 591
>G6PI_KLULA (P12341) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 555 Score = 30.0 bits (66), Expect = 7.4 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +1 Query: 493 SSVWLGWAGGTDLGLVSISLGGTDLGLVSIS 585 S W G+ G + +V+I +GG+DLG V ++ Sbjct: 148 SGAWKGYTGKSITDVVNIGIGGSDLGPVMVT 178
>G6PI_AGABI (Q711G1) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 551 Score = 30.0 bits (66), Expect = 7.4 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +1 Query: 493 SSVWLGWAGGTDLGLVSISLGGTDLGLVSIS 585 S W G+ G T +V+I +GG+DLG V ++ Sbjct: 140 SGQWKGYTGKTINTIVNIGIGGSDLGPVMVT 170
>COX2_BETVU (P98012) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 260 Score = 30.0 bits (66), Expect = 7.4 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -3 Query: 111 HHDLFSLILITLVMFSWILKR 49 HHD+F +++ LV SWIL R Sbjct: 39 HHDIFFFLILILVFVSWILVR 59
>NHK1_DROME (Q7KRY6) Nucleosomal histone kinase 1 (EC 2.7.11.1) (Protein| baellchen) Length = 599 Score = 30.0 bits (66), Expect = 7.4 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Frame = -1 Query: 611 AAASVQPKREMETRPRSVPPREIET-----RPRSVPPAQPNQTDDSSWSLETLKQLVDFT 447 A +S ++ ++T P+S P RE T +PRS P A P ++ L T ++F+ Sbjct: 425 ADSSPPSQKRVKTEPKSTP-RERATPKASPKPRSTPKASPKPQTPTAARLRTPNAKINFS 483 Query: 446 P 444 P Sbjct: 484 P 484
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 30.0 bits (66), Expect = 7.4 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = -1 Query: 602 SVQPKREMETRPRSVPPREI-ETRPRSVPPAQPNQ 501 S +P ++ P S+PPR TRP S PP++P++ Sbjct: 529 SSRPPSRYQSGPNSLPPRAATHTRPPSRPPSRPSR 563
>UBS1_YEAST (P38290) Ubiquitin-conjugating enzyme suppressor 1| Length = 277 Score = 30.0 bits (66), Expect = 7.4 Identities = 18/61 (29%), Positives = 32/61 (52%) Frame = -1 Query: 662 LLRSRDDETLNKRTYDYAAASVQPKREMETRPRSVPPREIETRPRSVPPAQPNQTDDSSW 483 +L + ++ +NKRT+DY A K + S+ P R R++ A P++T+D+ Sbjct: 210 MLSTLNNNNVNKRTHDYNAIDFMTKNLLACDDDSIHPVVSSKRSRTL--ACPDETNDNRG 267 Query: 482 S 480 S Sbjct: 268 S 268
>G6PI_ASHGO (Q758L0) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 555 Score = 29.6 bits (65), Expect = 9.7 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +1 Query: 493 SSVWLGWAGGTDLGLVSISLGGTDLGLVSIS 585 S W G+ G + +V+I +GG+DLG V ++ Sbjct: 148 SGAWKGYTGKSIKDVVNIGIGGSDLGPVMVT 178
>CUTL2_HUMAN (O14529) Homeobox protein cut-like 2 (Homeobox protein Cux-2)| (Cut-like 2) Length = 1424 Score = 29.6 bits (65), Expect = 9.7 Identities = 12/32 (37%), Positives = 21/32 (65%) Frame = -1 Query: 596 QPKREMETRPRSVPPREIETRPRSVPPAQPNQ 501 Q +REM+ + +++ E+ R RSVPP+ P + Sbjct: 637 QARREMQAQQQALLEMEVAPRGRSVPPSPPER 668
>GOGA4_MOUSE (Q91VW5) Golgin subfamily A member 4 (tGolgin-1)| Length = 2238 Score = 29.6 bits (65), Expect = 9.7 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -1 Query: 665 PLLRSRDDETLNKRTYDYAAASVQPKREMETRPRSVP 555 PL+R+ E+LN+ D +AA+ P +ME+ P Sbjct: 113 PLVRTSSRESLNQLDLDCSAAAFDPPSDMESEAEDAP 149
>LAMA5_MOUSE (Q61001) Laminin alpha-5 chain precursor| Length = 3718 Score = 29.6 bits (65), Expect = 9.7 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +2 Query: 143 PQTPSVPEARAPALALSHQSQG*CRPVCPSHWG 241 P P++PE +AP + +H C P +WG Sbjct: 738 PANPALPETQAPCMCRAHVEGPSCDRCKPGYWG 770
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 29.6 bits (65), Expect = 9.7 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%) Frame = +2 Query: 143 PQTPSVPEARAPALALSHQSQG*CRPVCPSHWG--PCSPSATT 265 P P++PEA+ P + +H C P WG P +P T Sbjct: 732 PVDPALPEAQVPCMCRAHVEGPSCDRCKPGFWGLSPSNPEGCT 774
>G6PI_SCHPO (P78917) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 550 Score = 29.6 bits (65), Expect = 9.7 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +1 Query: 481 DHDESSVWLGWAGGTDLGLVSISLGGTDLGLVSIS 585 D S W G+ G +V++ +GG+DLG V ++ Sbjct: 139 DAVRSGAWKGYTGKPIKSIVNVGIGGSDLGPVMVT 173
>SPT5_YEAST (P27692) Transcription elongation factor SPT5 (Chromatin elongation| factor SPT5) Length = 1063 Score = 29.6 bits (65), Expect = 9.7 Identities = 15/65 (23%), Positives = 27/65 (41%) Frame = -1 Query: 680 PVYEPPLLRSRDDETLNKRTYDYAAASVQPKREMETRPRSVPPREIETRPRSVPPAQPNQ 501 PV P ++D+ T +K T D + E ++PP + E + P QP Sbjct: 21 PVVVPQSTDTKDENTSDKDTVDSGNVTTTESTERAESTSNIPPLDGEEKEAKSEPQQPED 80 Query: 500 TDDSS 486 +++ Sbjct: 81 NAETA 85
>DBP8_SCHPO (Q9HGM5) ATP-dependent RNA helicase dbp8 (EC 3.6.1.-)| Length = 453 Score = 29.6 bits (65), Expect = 9.7 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 9/77 (11%) Frame = -1 Query: 491 SSWSLETLKQLVDFTPQEITQAISA--TEFSRCMASI------LIAF-MVVLSNWGLDVG 339 S W ++TLK L + P +I + + A E C+ AF + ++ W D Sbjct: 15 SPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPS 74 Query: 338 GTISRVLVCTRPLLFLI 288 G + +L TR L I Sbjct: 75 GIFALILTPTRELAIQI 91
>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)| (Trinucleotide repeat-containing gene 13 protein) Length = 1312 Score = 29.6 bits (65), Expect = 9.7 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = -1 Query: 602 SVQPKREMETRPRSVPPREIE-TRPRSVPPAQPNQ 501 S +P ++ P S+PPR TRP S PP++P++ Sbjct: 559 SSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSR 593 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 106,861,361 Number of Sequences: 219361 Number of extensions: 2412790 Number of successful extensions: 8006 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 7334 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7971 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7309604013 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
