ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2k09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MDL1_PRUDU (O24243) (R)-mandelonitrile lyase 1 precursor (EC 4.1... 30 3.6
2TDP_DROME (Q24318) Transcription factor dp 29 8.1

>MDL1_PRUDU (O24243) (R)-mandelonitrile lyase 1 precursor (EC 4.1.2.10)|
           (Hydroxynitrile lyase 1) ((R)-oxynitrilase 1)
          Length = 559

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 71  P*IGNFLLLNPRQYANSQPPSPL 139
           P +G FL  NPR + N+ PP+P+
Sbjct: 317 PYVGQFLYNNPRNFINNFPPNPI 339



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>TDP_DROME (Q24318) Transcription factor dp|
          Length = 445

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = -1

Query: 459 LMSNLLIILVAACQSIRDEGKRKKPNKPGKVLRHFVLMI 343
           + SN L  + A+  S++   +++KP+K GK LRHF + +
Sbjct: 142 IQSNSLHSMSASSSSVQ---RKRKPDKAGKGLRHFSMKV 177


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,705,031
Number of Sequences: 219361
Number of extensions: 1259471
Number of successful extensions: 2874
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2873
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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