ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd2j11 |
|---|---|
| Clone Library Name | barley_pub |
>IPYR_DROME (O77460) Inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate| phospho-hydrolase) (PPase) (Nucleosome remodeling factor 38 kDa subunit) Length = 338 Score = 34.3 bits (77), Expect = 0.33 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = +2 Query: 95 PAACATRCKYIMIDHKRTRRHRLA 166 PAA A+ C+YI I+ KRT+ H +A Sbjct: 27 PAALASNCRYIQIERKRTKSHEMA 50
>MLC2_DROME (P54357) Myosin-2 essential light chain (Myosin II essential light| chain) (Nonmuscle myosin essential light chain) Length = 147 Score = 33.5 bits (75), Expect = 0.57 Identities = 19/42 (45%), Positives = 25/42 (59%) Frame = -3 Query: 552 AATRSLDGDMTVDEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 A +++ GD T D+F E LR FD D G IS ELR + T+ Sbjct: 72 AISKARSGD-TADDFIEGLRHFDKDASGYISSAELRHLLTTL 112
>CABP4_HUMAN (P57796) Calcium-binding protein 4 (CaBP4)| Length = 275 Score = 32.0 bits (71), Expect = 1.7 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = -3 Query: 531 GDMTVDEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 G +DE + FD DRDG IS EL MRT+ Sbjct: 127 GPEELDELQAAFEEFDTDRDGYISHRELGDCMRTL 161
>CALL1_ARATH (P30188) Calmodulin-like protein 1| Length = 216 Score = 32.0 bits (71), Expect = 1.7 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = -3 Query: 549 ATRSLDGDMTVDEFKEWLRRFDVDRDGRISRDEL 448 A S +G + +E +E FDVDR+G+IS +EL Sbjct: 133 AGTSGEGSVETEELREVFEIFDVDRNGKISAEEL 166
>CALL_CAEEL (P04630) Calmodulin-like protein| Length = 161 Score = 32.0 bits (71), Expect = 1.7 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = -3 Query: 519 VDEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 +DEF+E FD D +G IS EL AMR++ Sbjct: 23 IDEFREAFMMFDKDGNGTISTKELGIAMRSL 53
>CABP1_MOUSE (Q9JLK7) Calcium-binding protein 1 (CaBP1)| Length = 226 Score = 31.6 bits (70), Expect = 2.2 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -3 Query: 519 VDEFKEWLRRFDVDRDGRISRDELRCAMRTIRTRFSGYK 403 V E ++ R FD + DG IS ELR AMR + G++ Sbjct: 160 VKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHR 198
>CABP1_HUMAN (Q9NZU7) Calcium-binding protein 1 (CaBP1) (Calbrain)| Length = 226 Score = 31.6 bits (70), Expect = 2.2 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -3 Query: 519 VDEFKEWLRRFDVDRDGRISRDELRCAMRTIRTRFSGYK 403 V E ++ R FD + DG IS ELR AMR + G++ Sbjct: 160 VKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHR 198
>CALM_SCHPO (P05933) Calmodulin (CaM)| Length = 150 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/40 (42%), Positives = 25/40 (62%) Frame = -3 Query: 546 TRSLDGDMTVDEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 TR+L D + EF+E FD D+DG I+ +EL MR++ Sbjct: 3 TRNLT-DEQIAEFREAFSLFDRDQDGNITSNELGVVMRSL 41
>CABP1_BOVIN (Q9N1R0) Calcium-binding protein 1 (CaBP1)| Length = 225 Score = 31.6 bits (70), Expect = 2.2 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -3 Query: 519 VDEFKEWLRRFDVDRDGRISRDELRCAMRTIRTRFSGYK 403 V E ++ R FD + DG IS ELR AMR + G++ Sbjct: 159 VKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHR 197
>CLF1_CANGA (Q6FW76) Pre-mRNA-splicing factor CLF1| Length = 695 Score = 31.6 bits (70), Expect = 2.2 Identities = 15/55 (27%), Positives = 27/55 (49%) Frame = -3 Query: 549 ATRSLDGDMTVDEFKEWLRRFDVDRDGRISRDELRCAMRTIRTRFSGYKSKRGIE 385 A + D D+ D +K ++F +D + +EL+ R RT F GY + ++ Sbjct: 6 AKQITDNDILKDVYKSQNKQFSIDAIDILDLEELKDVQRRKRTEFEGYLKRNRLD 60
>FIMB_YEAST (P32599) Fimbrin (ABP67)| Length = 642 Score = 31.6 bits (70), Expect = 2.2 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -3 Query: 540 SLDGDMTVDEFKEWLRRFDVDRDGRISRDE 451 S DGD T DE +E L+ VD GR+ D+ Sbjct: 46 SKDGDATYDEARETLKHVGVDASGRVELDD 75
>CABP1_RAT (O88751) Calcium-binding protein 1 (CaBP1) (Caldendrin)| Length = 298 Score = 31.6 bits (70), Expect = 2.2 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -3 Query: 519 VDEFKEWLRRFDVDRDGRISRDELRCAMRTIRTRFSGYK 403 V E ++ R FD + DG IS ELR AMR + G++ Sbjct: 232 VKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHR 270
>CABP2_HUMAN (Q9NPB3) Calcium-binding protein 2 (CaBP2)| Length = 219 Score = 31.2 bits (69), Expect = 2.8 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -3 Query: 519 VDEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 V E ++ R FD + DGRIS ELR A++ + Sbjct: 153 VRELRDAFREFDTNGDGRISVGELRAALKAL 183
>CALM_NEUCR (P61859) Calmodulin (CaM)| Length = 148 Score = 30.8 bits (68), Expect = 3.7 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = -3 Query: 519 VDEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 V EFKE FD D DG+I+ EL MR++ Sbjct: 9 VSEFKEAFSLFDKDGDGQITTKELGTVMRSL 39
>CALM_MAGGR (Q9UWF0) Calmodulin (CaM)| Length = 148 Score = 30.8 bits (68), Expect = 3.7 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = -3 Query: 519 VDEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 V EFKE FD D DG+I+ EL MR++ Sbjct: 9 VSEFKEAFSLFDKDGDGQITTKELGTVMRSL 39
>CALM_COLTR (P61860) Calmodulin (CaM)| Length = 148 Score = 30.8 bits (68), Expect = 3.7 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = -3 Query: 519 VDEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 V EFKE FD D DG+I+ EL MR++ Sbjct: 9 VSEFKEAFSLFDKDGDGQITTKELGTVMRSL 39
>CALM_COLGL (P61861) Calmodulin (CaM)| Length = 148 Score = 30.8 bits (68), Expect = 3.7 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = -3 Query: 519 VDEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 V EFKE FD D DG+I+ EL MR++ Sbjct: 9 VSEFKEAFSLFDKDGDGQITTKELGTVMRSL 39
>CALM3_PETHY (P27164) Calmodulin-related protein| Length = 183 Score = 30.8 bits (68), Expect = 3.7 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = -3 Query: 540 SLDGDMTVDEFKEWLRRFDVDRDGRISRDELRCAMRTIRTRFSGYKSKRGI 388 +L +T +E E +R DVD DG+I+ +E M R R +SKR + Sbjct: 111 NLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMANRRRRRIEESKRSV 161
>TCH2_ARATH (P25070) Calmodulin-related protein 2, touch-induced| Length = 161 Score = 30.8 bits (68), Expect = 3.7 Identities = 13/32 (40%), Positives = 23/32 (71%) Frame = -3 Query: 522 TVDEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 ++D+ K+ +RFD + DG+IS DEL+ +R + Sbjct: 14 SMDDIKKVFQRFDKNGDGKISVDELKEVIRAL 45
>PLSL_BRARE (Q6P698) Plastin-2 (L-plastin) (Lymphocyte cytosolic plastin 1)| Length = 624 Score = 30.8 bits (68), Expect = 3.7 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -3 Query: 519 VDEFKEWLRRFDVDRDGRISRDELRCAMRTIRTRFSGYKSKRGIE 385 ++E +E + DVD +G IS DEL + GY+ + I+ Sbjct: 11 MEELREAFTKVDVDGNGHISTDELNALFKAANLPLPGYRVREIIQ 55
>CALM_CANAL (P23286) Calmodulin (CaM)| Length = 149 Score = 30.8 bits (68), Expect = 3.7 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 528 DMTVDEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 + + EFKE FD D DG+I+ EL MR++ Sbjct: 7 EQQIAEFKEAFSLFDKDSDGKITTKELGTVMRSL 40
>CAN9_HUMAN (O14815) Calpain-9 (EC 3.4.22.-) (Digestive tract-specific calpain)| (nCL-4) (CG36 protein) Length = 690 Score = 30.4 bits (67), Expect = 4.8 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Frame = -3 Query: 516 DEFKEWLR---RFDVDRDGRISRDELRCAMRTIRTRFSGY 406 D+ K+W+ RFD D+ G +S ELR A++ + S + Sbjct: 591 DKLKQWINLFLRFDADKSGTMSTYELRTALKAAGFQLSSH 630
>POLC7_PHLPR (O82040) Polcalcin Phl p 7 (Calcium-binding pollen allergen Phl p| 7) (P7) Length = 78 Score = 30.4 bits (67), Expect = 4.8 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -3 Query: 516 DEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 D+ + +RFD + DG+IS EL A+RT+ Sbjct: 3 DDMERIFKRFDTNGDGKISLSELTDALRTL 32
>CATR_GIALA (Q24956) Caltractin (Centrin)| Length = 176 Score = 30.0 bits (66), Expect = 6.3 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -3 Query: 546 TRSLDGDMTVDEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 TR+ + E +E FD DR GRI EL+ AMR + Sbjct: 24 TRAEVSEEMKHEIREAFDLFDADRSGRIDFHELKVAMRAL 63
>TCH3_ARATH (P25071) Calmodulin-related protein 3, touch-induced| Length = 324 Score = 30.0 bits (66), Expect = 6.3 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = -3 Query: 528 DMTVDEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 D + EF+E R FD + DG I+ +ELR MR++ Sbjct: 186 DDQILEFREAFRVFDKNGDGYITVNELRTTMRSL 219
>CAN9_MOUSE (Q9D805) Calpain-9 (EC 3.4.22.-) (Digestive tract-specific calpain)| (nCL-4) Length = 690 Score = 29.6 bits (65), Expect = 8.2 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Frame = -3 Query: 516 DEFKEWLR---RFDVDRDGRISRDELRCAMRTIRTRFSGY 406 D+ K W+ +FDVD+ G +S ELR A++ + G+ Sbjct: 591 DKLKHWMDLFLQFDVDKSGTMSSYELRTALKAAGFQLGGH 630
>TNNC_BRALA (P80322) Troponin C| Length = 163 Score = 29.6 bits (65), Expect = 8.2 Identities = 13/45 (28%), Positives = 26/45 (57%) Frame = -3 Query: 549 ATRSLDGDMTVDEFKEWLRRFDVDRDGRISRDELRCAMRTIRTRF 415 A+ D+T DE E++ +D +RDGR +E + ++ ++ R+ Sbjct: 119 ASECAGDDLTDDELLEFMMDYDGNRDGRFDYEEWKEIIQELKVRW 163
>CALM_EMENI (P60204) Calmodulin (CaM)| Length = 148 Score = 29.6 bits (65), Expect = 8.2 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -3 Query: 519 VDEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 V E+KE FD D DG+I+ EL MR++ Sbjct: 9 VSEYKEAFSLFDKDGDGQITTKELGTVMRSL 39
>CALM_ASPOR (P60205) Calmodulin (CaM)| Length = 148 Score = 29.6 bits (65), Expect = 8.2 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -3 Query: 519 VDEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 V E+KE FD D DG+I+ EL MR++ Sbjct: 9 VSEYKEAFSLFDKDGDGQITTKELGTVMRSL 39
>CALM_AJECA (P60206) Calmodulin (CaM)| Length = 148 Score = 29.6 bits (65), Expect = 8.2 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -3 Query: 519 VDEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 V E+KE FD D DG+I+ EL MR++ Sbjct: 9 VSEYKEAFSLFDKDGDGQITTKELGTVMRSL 39
>MLR_DROME (P18432) Myosin regulatory light chain 2 (MLC-2)| Length = 221 Score = 29.6 bits (65), Expect = 8.2 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -3 Query: 519 VDEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 + EFKE + D D+DG I +++LR A ++ Sbjct: 76 IAEFKEAFQLMDADKDGIIGKNDLRAAFDSV 106
>LPS1A_LYTPI (P09485) Calcium-binding protein LPS1-alpha| Length = 321 Score = 29.6 bits (65), Expect = 8.2 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = -3 Query: 516 DEFKEWLRRFDVDRDGRISRDELRCAMRTIRTR 418 DE K+ D D +GRIS DEL +R I T+ Sbjct: 88 DEIKQMFDDLDKDGNGRISPDELNKGVREIYTK 120
>CBP2_ARATH (P30187) 22 kDa calmodulin-like calcium-binding protein (CABP-22)| Length = 191 Score = 29.6 bits (65), Expect = 8.2 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -3 Query: 552 AATRSLDGDMTVDEFKEWLRRFDVDRDGRISRDELRCAM 436 A RSL ++T E +E + D+D DG I+ E CAM Sbjct: 35 AVMRSLGLNLTQAELQEEINDSDLDGDGTINFTEFLCAM 73
>CABO_LOLPE (P14533) Squidulin (Optic lobe calcium-binding protein) (SCABP)| Length = 149 Score = 29.6 bits (65), Expect = 8.2 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -3 Query: 519 VDEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 + E K+ FD+D DG+I+ ELR M+++ Sbjct: 9 IAEIKDAFDMFDIDGDGQITSKELRSVMKSL 39
>UBIE_CHLCV (Q81ZV1) Menaquinone biosynthesis methyltransferase ubiE (EC| 2.1.1.-) Length = 230 Score = 29.6 bits (65), Expect = 8.2 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = -3 Query: 270 LGLLREASSISIHACYLLE*ALINRLYLRFLVYLLANLCRR 148 LG+L S H YL +RLYL+FLV L+ LC + Sbjct: 144 LGILELTSPSDNHPMYLA-----HRLYLKFLVPLIGRLCSK 179
>POLC2_JUNOX (O64943) Polcalcin Jun o 2 (Calcium-binding pollen allergen Jun o| 2) Length = 165 Score = 29.6 bits (65), Expect = 8.2 Identities = 14/46 (30%), Positives = 28/46 (60%) Frame = -3 Query: 564 GT*TAATRSLDGDMTVDEFKEWLRRFDVDRDGRISRDELRCAMRTI 427 G+ +A + + + +V E +E ++FD + DG+IS EL +R++ Sbjct: 9 GSKSACSGEVVMEQSVHELEEVFKKFDANGDGKISGSELADILRSL 54 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,600,642 Number of Sequences: 219361 Number of extensions: 1029556 Number of successful extensions: 3311 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 3074 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3271 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
